From 7f3b85d264ad4684f4710c4d7153d97b72ad7de9 Mon Sep 17 00:00:00 2001
From: Guillaume S <gsamson@mercator-ocean.fr>
Date: Thu, 9 Mar 2023 17:36:08 +0100
Subject: [PATCH] disable "detect_missing_value" attribute in
field_def_nemo-ice.xml for Mercator Belenos & AA HPCs
---
sette/BATCH_TEMPLATE/batch-X64_AA_INTEL_OMPI | 3 +++
sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_IMPI | 6 +++++-
sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_OMPI | 4 +++-
3 files changed, 11 insertions(+), 2 deletions(-)
diff --git a/sette/BATCH_TEMPLATE/batch-X64_AA_INTEL_OMPI b/sette/BATCH_TEMPLATE/batch-X64_AA_INTEL_OMPI
index 3a2e37f4..4d6933b8 100644
--- a/sette/BATCH_TEMPLATE/batch-X64_AA_INTEL_OMPI
+++ b/sette/BATCH_TEMPLATE/batch-X64_AA_INTEL_OMPI
@@ -67,6 +67,9 @@ module list
# change to the working directory
#
cd ${EXE_DIR}
+ if [[ ${NEW_CONF} =~ "ICE_AGRIF" ]]; then
+ sed -i'' -e 's/detect_missing_value="true"/detect_missing_value="false"/' field_def_nemo-ice.xml
+ fi
echo Running on host `hostname`
echo Time is `date`
echo Directory is `pwd`
diff --git a/sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_IMPI b/sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_IMPI
index d8239fe0..8dc05d97 100644
--- a/sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_IMPI
+++ b/sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_IMPI
@@ -22,6 +22,8 @@
# Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these
# (via sed operating on this template job file).
#
+set -x
+
echo " ";
OCORES=NPROCS
XCORES=NXIOPROCS
@@ -71,7 +73,9 @@ export XIO_HOME=${XIOS_DIR}
# change to the working directory
#
cd $EXE_DIR
-
+ if [[ ${NEW_CONF} =~ "ICE_AGRIF" ]]; then
+ sed -i'' -e 's/detect_missing_value="true"/detect_missing_value="false"/' field_def_nemo-ice.xml
+ fi
echo Running on host `hostname`
echo Time is `date`
echo Directory is `pwd`
diff --git a/sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_OMPI b/sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_OMPI
index cf73cb0c..a5c367bc 100644
--- a/sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_OMPI
+++ b/sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_OMPI
@@ -14,7 +14,6 @@
##SBATCH --qos=normal
#SBATCH --qos=coper
-set -x
# Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these
# (via sed operating on this template job file).
@@ -74,6 +73,9 @@ export OMPI_F90=ifort
# change to the working directory
#
cd ${EXE_DIR}
+ if [[ ${NEW_CONF} =~ "ICE_AGRIF" ]]; then
+ sed -i'' -e 's/detect_missing_value="true"/detect_missing_value="false"/' field_def_nemo-ice.xml
+ fi
echo Running on host `hostname`
echo Time is `date`
echo Directory is `pwd`
--
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