From b7c00efc9866af59a2a27c649d6674cb17231045 Mon Sep 17 00:00:00 2001
From: Guillaume Samson <guillaume.samson@mercator-ocean.fr>
Date: Mon, 9 Jan 2023 11:15:09 +0000
Subject: [PATCH] Resolve "Makenemo cleaning"
---
.gitignore | 4 +
makenemo | 372 +++++++++++-------------
mk/Fadd_keys.sh | 22 +-
mk/Fcheck_archfile.sh | 12 +-
mk/Fcheck_config.sh | 8 +-
mk/Fclean_config.sh | 24 +-
mk/Fclean_var.sh | 68 -----
mk/Fdef_keys.sh | 7 +-
mk/Fdel_keys.sh | 23 +-
mk/Flist_archfile.sh | 8 +-
mk/Flist_cfgs.sh | 6 +-
mk/Fmake_WORK.sh | 32 +-
mk/Fmake_bld.sh | 63 ----
mk/Fmake_tools_bld.sh | 2 +-
mk/Fprep_agrif.sh | 25 +-
mk/README | 7 -
mk/agrifpp.sh | 9 +-
mk/bld.cfg | 30 +-
mk/bld_preproagr.cfg | 10 +-
mk/bld_preproagr_tools.cfg | 11 +-
mk/bld_tools.cfg | 22 +-
mk/bldxag.cfg | 18 +-
mk/bldxag_tools.cfg | 8 +-
mk/bldxagxcdf.cfg | 22 +-
mk/bldxcdf.cfg | 28 +-
mk/conv.cfg | 6 +-
sette/all_functions.sh | 37 ++-
sette/prepare_exe_dir.sh | 26 +-
sette/prepare_job.sh | 8 +-
sette/sette.sh | 7 +-
sette/sette_eval.sh | 2 -
sette/sette_list_avail_cfg.sh | 4 +-
sette/sette_reference-configurations.sh | 42 +--
sette/sette_rpt.sh | 3 -
sette/sette_test-cases.sh | 12 +-
tools/maketools | 89 +++---
36 files changed, 427 insertions(+), 650 deletions(-)
delete mode 100755 mk/Fclean_var.sh
delete mode 100755 mk/Fmake_bld.sh
delete mode 100644 mk/README
diff --git a/.gitignore b/.gitignore
index ab4a609c..a8c97569 100644
--- a/.gitignore
+++ b/.gitignore
@@ -4,12 +4,16 @@ cfgs/work_cfgs.txt
cfgs/*/BLD
cfgs/*/EXP00
cfgs/*/WORK
+cfgs/*/NEMOFILES
+cfgs/*/AGRIFLIB
cfgs/*_ST
tests/work_cfgs.txt
tests/*/BLD
tests/*/EXP00
tests/*/WORK
+tests/*/NEMOFILES
+tests/*/AGRIFLIB
tests/*_ST
tools/*/BLD
diff --git a/makenemo b/makenemo
index 5d03dcc1..f473c4e5 100755
--- a/makenemo
+++ b/makenemo
@@ -1,9 +1,8 @@
#!/bin/bash
-#set -x
set -o posix
+#set -x
#set -u
#set -e
-#+
#
# ===============
# makenemo
@@ -16,15 +15,12 @@ set -o posix
# SYNOPSIS
# ========
#
-# ::
-#
# $ makenemo
#
#
# DESCRIPTION
# ===========
#
-#
# This script aims :
#
# - to choose MYCONFIG
@@ -44,11 +40,8 @@ set -o posix
#
# Locally defined :
#
-# - TAB : NEMO subdirectory used (read)
# - MAIN_DIR : self explaining
# - CONFIG_DIR : " " "
-# - MODELES_DIR : " " "
-# - TOOLS_DIR : " " "
# - NEMO_DIR : " " "
# - REMOTE_CTL : URL link to a remote resource list for an external configuration
# which is not part of the reference suite
@@ -59,62 +52,26 @@ set -o posix
# EXAMPLES
# ========
#
-# ::
-#
-# $ ./makenemo -m ifort_osx - j3 -n ORCA2_SI3_PISCES
-#
-#
-# TODO
-# ====
-#
-# option debug
-#
-#
-# EVOLUTIONS
-# ==========
-#
-# $Id: makenemo 15186 2021-08-12 16:39:09Z gsamson $
-#
-#
-#
-# * creation
-#
-#-
+# $ ./makenemo -m ifort_osx -j 3 -r ORCA2_ICE_PISCES -n MY_ORCA2
-#-
-##- Initialization of the options ---
+
+# Initialization of the options
x_d=''; x_h=''; x_n=''; x_r=''; x_c='';
x_u=''; x_a=''; x_m=''; x_t=''; x_b='';
-x_j='1'; x_e='none'; x_s='src'; x_v='1'
-x_c_cfg=0
-x_nocdf=0
-
-##- Local variables ---
-b_n=$(basename ${0})
-OPTIND='1'
-MAIN_DIR=$(cd $(dirname "$0"); pwd)
-MAIN_DIR=${MAIN_DIR%/sette}
-MAIN_DIR=${MAIN_DIR%/tools}
-MAIN_DIR=${MAIN_DIR%/cfgs}
-MAIN_DIR=${MAIN_DIR%/tests}
-MAIN_DIR=${MAIN_DIR%/ext}
-MAIN_DIR=${MAIN_DIR%/arch}
-export MAIN_DIR
-#
-export CFGS_DIR=${MAIN_DIR}/cfgs
-export TESTS_DIR=${MAIN_DIR}/tests
-export TOOLS_DIR=${MAIN_DIR}/tools
-export COMPIL_DIR=${MAIN_DIR}/mk
-export NEMO_DIR=${MAIN_DIR}/${x_s}
-export AGRIFUSE='10'
+x_j='1'; x_e=''; x_s='src'; x_v='1'
list_key='0'; chk_key='1'
list_add_key=''; list_def_key=''; list_del_key=''
-#-
-#- FCM and functions location ---
-export PATH=${MAIN_DIR}/ext/FCM/bin:$PATH
+x_c_cfg=0; x_nocdf=0
+
+
+# Local variables
+MAIN_DIR=$(cd $(dirname "$0"); pwd)
+MAIN_DIR=${MAIN_DIR%/+(sette|tools|cfgs|tests|ext|arch)}
+COMPIL_DIR=${MAIN_DIR}/mk
+PATH=${MAIN_DIR}/ext/FCM/bin:$PATH
-#-
-#- Choice of the options ---
+
+# Choice of the options
while [ ${#1} -gt 0 ]; do
case "$1" in
@@ -228,91 +185,107 @@ EOF
shift
done
-export NEW_CONF=${x_n}
+
+# Variables definition based on options
NBR_PRC=${x_j}
CMP_NAM=${x_m}
-NEM_SUBDIR=${x_d}
-REF_CONF=${x_r}
-DEMO_CONF=${x_a}
-export NEMO_DIR=${MAIN_DIR}/${x_s}
NEMO_DBG=${x_b}
+NEMO_DIR=${MAIN_DIR}/${x_s}
+
+
+# Print available arch files
+[ "${CMP_NAM}" == 'all' ] && ${COMPIL_DIR}/Flist_archfile.sh && exit 0
+
+
+# New config case
+if [ -n "${x_n}" ]; then
+
+ # Look for already-existing new config
+ NEW_CONF=${x_n}
+ if [ -n "${x_t}" ]; then
+ NEW_DIR=$( find ${x_t} -maxdepth 1 -type d -name ${x_n} 2>/dev/null )
+ else
+ NEW_DIR=$( find ${MAIN_DIR}/cfgs ${MAIN_DIR}/tests -maxdepth 1 -type d -name ${NEW_CONF} 2>/dev/null )
+ fi
+ NEW_NB=$( echo ${NEW_DIR} | wc -w )
+ NEW_CMP=$( grep -l "^${NEW_CONF} " ${MAIN_DIR}/cfgs/*_cfgs.txt ${MAIN_DIR}/tests/*_cfgs.txt )
+
+ # Define if new config needs to be created or not
+ if [[ ${NEW_NB:-0} -eq 0 || -z "${NEW_CMP}" ]]; then
+ DO_NEW=1
+ else
+ DO_NEW=0
+ NEW_SUB="$( grep "^${NEW_CONF} " ${NEW_CMP} | awk '{$1 = ""; print $0}' )"
+ if [[ -n "${x_r}" || -n "${x_a}" ]]; then
+ echo -e "\nWARNING: ${NEW_CONF} configuration is already existing, we ignore \"-r\" & \"-a\" options\n"
+ fi
+ fi
-[ "${CMP_NAM}" == 'all' ] && . ${COMPIL_DIR}/Flist_archfile.sh all && exit
-
-# '-r': reference config ('cfgs' directory)
-if [ -n "${REF_CONF}" ]; then
- conf_file=ref_cfgs.txt ; export CONFIG_DIR=${CFGS_DIR} ; TML_CONF=${REF_CONF}
-# '-a': testcases ('tests' directory)
-elif [ -n "${DEMO_CONF}" ]; then
- conf_file=demo_cfgs.txt; export CONFIG_DIR=${TESTS_DIR}; TML_CONF=${DEMO_CONF}
-# '-n': new or already-existing config (any directory)
-elif [[ -n "${NEW_CONF}" && -z "${conf_file}" ]]; then
- # already-existing config (check work_cfgs.txt)
- if [ $( grep -l "^${NEW_CONF} " ${CFGS_DIR}/work_cfgs.txt ${TESTS_DIR}/work_cfgs.txt 2> /dev/null | wc -l ) -eq 1 ]; then
- conf_file=$( grep -l "^${NEW_CONF} " ${CFGS_DIR}/work_cfgs.txt ${TESTS_DIR}/work_cfgs.txt )
- export CONFIG_DIR=$( dirname $conf_file ); conf_file=$( basename $conf_file )
- TML_CONF=${NEW_CONF}
- # new config (check ref_cfgs.txt & demo_cfgs.txt)
- elif [ $( grep -l "^${NEW_CONF} " ${CFGS_DIR}/ref_cfgs.txt ${TESTS_DIR}/demo_cfgs.txt 2> /dev/null | wc -l ) -eq 1 ]; then
- conf_file=$( grep -l "^${NEW_CONF} " ${CFGS_DIR}/ref_cfgs.txt ${TESTS_DIR}/demo_cfgs.txt )
- export CONFIG_DIR=$( dirname $conf_file ); conf_file=$( basename $conf_file )
- TML_CONF=${NEW_CONF}
- # config not found in both cfgs & tests directories
- else
- echo -e "\033[0;31m\nUser configuration ${NEW_CONF} not found !"
- echo -e "Please choose a reference configuration (-r) or a testcase (-a)"
- echo -e "among this list to create your own configuration (-n):"
- ${COMPIL_DIR}/Flist_cfgs.sh
- exit 2
+fi
+
+
+# Define ref config if new config not defined or not existing yet
+if [[ ${DO_NEW:-0} -eq 1 || -z "${NEW_CONF}" ]]; then
+
+ if [[ -n "${x_r}" || -n "${x_a}" ]]; then
+ REF_DIR=$( find ${MAIN_DIR}/cfgs ${MAIN_DIR}/tests -maxdepth 1 -type d -name ${x_r:-""} -o -name ${x_a:-""} 2>/dev/null )
+ REF_NB=$( echo ${REF_DIR} | wc -w )
+ REF_CMP=$( grep -l "^${x_r} \|^${x_a} " ${MAIN_DIR}/cfgs/ref_cfgs.txt ${MAIN_DIR}/tests/demo_cfgs.txt )
+ if [[ ${REF_NB} -eq 1 && -n "${REF_CMP}" ]]; then
+ REF_CONF=$(basename ${REF_DIR})
+ REF_TYPE=$(basename ${REF_DIR%\/*})
+ REF_FILE=$(basename ${REF_CMP})
+ REF_SUB="$( grep "^${REF_CONF} " ${REF_CMP} | awk '{$1 = ""; print $0}' )"
+ elif [ ${REF_NB} -gt 1 ]; then
+ echo -e "Please choose only one reference configuration (-r) or testcase (-a)"; exit 2
+ elif [ ${REF_NB} -eq 0 ]; then
+ echo -e "Please choose at least one reference configuration (-r) or testcase (-a) from:"
+ ${COMPIL_DIR}/Flist_cfgs.sh ${MAIN_DIR}; exit 2
fi
-# using both '-r' and '-a' options
-elif [[ -n "${REF_CONF}" && -n "${DEMO_CONF}" ]]; then
- echo -e "\033[0;31m\nYou have to choose whether you work with:"
- echo -e " - LTS configurations in ./cfgs ('-r') or"
- echo -e " - Unsupported cases in ./tests ('-a')\033[0m\n"
- exit 2
-# config found in both cfgs & tests directories
-elif [ $( grep -l "^${NEW_CONF} " */work_cfgs.txt 2> /dev/null | wc -l ) -gt 1 ]; then
- echo -e "\033[0;31m\nUser configuration ${NEW_CONF} is present in both"
- echo -e "cfgs/work_cfgs.txt and tests/work_cfgs.txt files"
- echo -e "Please choose only one \033[0m"
- exit 2
-# 'all': list all available configurations
-elif [[ "${REF_CONF}" == 'all' || "${DEMO_CONF}" == 'all' ]]; then
- ${COMPIL_DIR}/Flist_cfgs.sh
- exit 0
-# any other case
-else
- exit 2
+ else
+ echo -e "Please choose at least one reference configuration (-r) or testcase (-a) from:"
+ ${COMPIL_DIR}/Flist_cfgs.sh ${MAIN_DIR}; exit 2
+ fi
+
+ # force config creation if ref config installed outside nemo directory
+ if [[ -n "${x_t}" && ${x_t} != ${REF_DIR%\/*} ]]; then DO_NEW=1; fi
+
fi
-if [ -z "${NEW_CONF}" ]; then NEW_CONF=$TML_CONF; fi
-export NEMO_TDIR=${x_t:-$CONFIG_DIR}
+
+# Current config (new or ref) definition
+CFG_DIR=$( dirname ${NEW_CMP:-${REF_CMP}} )
+CUR_DIR=${NEW_DIR:-${REF_DIR}}
+CUR_CONF=${NEW_CONF:-${REF_CONF}}
+CUR_SUB=${NEW_SUB:-${REF_SUB}}
+NEMO_TDIR=${x_t:-${CUR_DIR%\/*}}
-# check configuration existence & clean it if asked
-incfg=$( find $NEMO_TDIR -type d -maxdepth 1 -name ${NEW_CONF} 2>/dev/null | wc -l ) # this configuration exists in CFGS_DIR
-if [ $incfg -eq 1 ] ; then
- # CLEANING
+# Config cleaning
+if [ -d ${NEMO_TDIR}/${CUR_CONF} ]; then
+
if [ $x_c_cfg -eq 1 ] ; then
- . ${COMPIL_DIR}/Fclean_config.sh
+ ${COMPIL_DIR}/Fclean_config.sh ${NEMO_TDIR}/${CUR_CONF}
exit 0
elif [ ${#x_c} -ne 0 ]; then
- #read -p "Are you sure that you want to clean $NEW_CONF configuration ? " -n 1 -r; echo
+
+ #read -p "Are you sure that you want to clean $CUR_CONF configuration ? " -n 1 -r; echo
#if [[ $REPLY =~ ^[Yy]$ ]]; then
- # We coose the default light file
- [ $x_nocdf -eq 1 ] && export USEBLD=bldxagxcdf.cfg || export USEBLD=bldxag.cfg
- # We look after agrif
- grep key_agrif ${NEMO_TDIR}/BLD/cpp.fcm 2>/dev/null && export AGRIFUSE=1 && export USEBLD=${USEBLD/xag/}
+ # choose & generate fcm cfg file
+ [ $x_nocdf -eq 1 ] && USEBLD=bldxagxcdf.cfg || USEBLD=bldxag.cfg
+ grep key_agrif ${NEMO_TDIR}/${CUR_CONF}/BLD/cpp.fcm 2>/dev/null && USEBLD=${USEBLD/xag/}
+ sed -e "s~MAIN_DIR~${MAIN_DIR}~; s~NEMO_TDIR~${NEMO_TDIR}~; s~CUR_CONF~${CUR_CONF}~; s~COMPIL_DIR~${COMPIL_DIR}~" ${COMPIL_DIR}/${USEBLD} > ${NEMO_TDIR}/${CUR_CONF}/BLD/${USEBLD}
+
# fcm clean
- fcm build ${x_c} --ignore-lock -v ${x_v} -j ${NBR_PRC} ${COMPIL_DIR}/$USEBLD || exit 1
- # add remove for clean option
- echo -e '\nCleaning '${NEW_CONF}' building directories and variables\n'
+ fcm build ${x_c} --ignore-lock -v ${x_v} -j ${NBR_PRC} ${NEMO_TDIR}/${CUR_CONF}/BLD/${USEBLD} || exit 1
+
+ # remove all build directories
+ echo -e '\nCleaning '${CUR_CONF}' building directories and variables\n'
for dir in AGRIFLIB BLD LONG NEMOFILES REPRO_* SHORT WORK; do
- rm -rf ${NEMO_TDIR}/${NEW_CONF}/$dir
+ rm -rf ${NEMO_TDIR}/${CUR_CONF}/$dir
done
for file in cpp.history cpp.fcm full_key_list.txt; do
- rm -f ${NEMO_TDIR}/${NEW_CONF}/BLD/$file
+ rm -f ${NEMO_TDIR}/${CUR_CONF}/BLD/$file
done
exit 0
#else
@@ -320,117 +293,108 @@ if [ $incfg -eq 1 ] ; then
# exit 2
#fi
fi
- if [[ -n "$x_n" && -n "$REF_CONF" ]]; then echo -e "\nWARNING: $x_n configuration is already existing, we ignore \"-r $REF_CONF\"\n"; REF_CONF=""; fi
- if [[ -n "$x_n" && -n "$DEMO_CONF" ]]; then echo -e "\nWARNING: $x_n configuration is already existing, we ignore \"-a $DEMO_CONF\"\n"; DEMO_CONF=""; fi
-elif [ $incfg -eq 0 ]; then
+else
[ $x_c_cfg -eq 1 ] && echo -e "\nWARNING: Configuration cleaning of a non-existing configuration, we ignore\n" && exit 0
[ ${#x_c} -ne 0 ] && echo -e "\nWARNING: Compilation cleaning of a non-existing configuration, we ignore\n" && exit 0
fi
-## No ref. cfg or demo selected
-if [[ -z "${REF_CONF}" && -z "${DEMO_CONF}" && $incfg -eq 0 ]]; then
- echo -e "\033[0;31m\nAt least a reference configuration ('-r'), a test case ('-a'), "
- echo -e "a remote configuration ('-u') has to be choosen to build a new configuration!!!\033[0m"
- ${COMPIL_DIR}/Flist_cfgs.sh
- exit 2
+# Create/update config components list
+NEM_SUBDIR=( ${x_d:-${CUR_SUB}} )
+if [ ${DO_NEW:-0} -eq 1 ]; then
+ echo
+ printf "\nYou are installing a new configuration %s from %s " ${CUR_CONF} ${REF_CONF}
+ printf "with sub-components: %s\n" "${NEM_SUBDIR[*]}"
+ echo
+else
+ echo
+ printf "\nYou are compiling an existing configuration %s " ${CUR_CONF}
+ printf "with sub-components: %s\n" "${NEM_SUBDIR[*]}"
+ echo
fi
-
-## Update sub-comps if needed
-if [ -z "${NEM_SUBDIR}" ]; then
- NEM_SUBDIR=$( grep "${TML_CONF} " ${CONFIG_DIR}/${conf_file} | awk '{$1 = ""; print $0}' )
+if [[ -n "${x_d}" || ${DO_NEW:-0} -eq 1 ]]; then
+ [ -f ${CFG_DIR}/work_cfgs.txt ] && sed -i "/^${CUR_CONF} /d" ${CFG_DIR}/work_cfgs.txt
+ echo ${CUR_CONF} "${NEM_SUBDIR[*]}" >> ${CFG_DIR}/work_cfgs.txt
fi
-export NEM_SUBDIR="${NEM_SUBDIR}" NEW_CONF="${NEW_CONF}"
-## Create new config
-if [ ${TML_CONF} != ${NEW_CONF} ]; then
- echo
- printf "\nYou are installing a new configuration %s from %s " ${NEW_CONF} ${TML_CONF}
- if [ -n "${NEM_SUBDIR}" ]; then printf "with sub-components: %s\n" "${NEM_SUBDIR}"; fi
- echo
-fi
-${COMPIL_DIR}/Fmake_config.sh ${NEMO_TDIR}/${NEW_CONF} ${CONFIG_DIR}/${TML_CONF} # must be called for existing config to create EXP00 if not existing
+# Create config directories
+${COMPIL_DIR}/Fmake_config.sh ${NEMO_TDIR}/${CUR_CONF} ${REF_DIR:-${NEMO_TDIR}/${CUR_CONF}}
-## Save new configuration with sub-components set in work_cfgs.txt
-[ -f ${CONFIG_DIR}/work_cfgs.txt ] && sed -i "/^${NEW_CONF} /d" ${CONFIG_DIR}/work_cfgs.txt
-echo ${NEW_CONF} "${NEM_SUBDIR}" >> ${CONFIG_DIR}/work_cfgs.txt
-#- Create the WORK ---
-#- Clean links and librairies ---
-#- Creating the good links, at first on OCE ---
-. ${COMPIL_DIR}/Fmake_WORK.sh ${x_e[@]} || exit 3
+# Create/update WORK directory
+${COMPIL_DIR}/Fmake_WORK.sh "${NEM_SUBDIR[*]/#/${NEMO_DIR}/}" "${x_e:-"MY_SRC"}" ${NEMO_TDIR}/${CUR_CONF} || exit 3
-. ${COMPIL_DIR}/Fmake_bld.sh ${CONFIG_DIR} ${NEW_CONF} ${NEMO_TDIR} || exit 3
-# build the complete list of the cpp keys of this configuration
+# Build the complete list of the CPP keys of this configuration
if [[ ${chk_key} -eq 1 || ${list_key} -eq 1 ]] ; then
- for i in $( grep "^ *#.* key_" ${NEMO_TDIR}/${NEW_CONF}/WORK/* ); do
- echo $i | grep key_ | sed -e "s/=.*//"
- done \
- | sort -d | uniq > ${NEMO_TDIR}/${NEW_CONF}/BLD/full_key_list.txt
-
- [ ${list_key} -eq 1 ] && echo && cat ${NEMO_TDIR}/${NEW_CONF}/BLD/full_key_list.txt && exit 0
+ grep -h "^#.*defined.*" ${NEMO_TDIR}/${CUR_CONF}/WORK/* | \
+ grep -o "key_[[:alnum:]]\+\|key_[[:alnum:]]\+_[[:alnum:]]\+\|iso_[[:alnum:]]\+_[[:alnum:]]\+" | \
+ sort | uniq > ${NEMO_TDIR}/${CUR_CONF}/BLD/full_key_list.txt
+ [ ${list_key} -eq 1 ] && echo && cat ${NEMO_TDIR}/${CUR_CONF}/BLD/full_key_list.txt && exit 0
fi
-#- At this stage new configuration has been added, we add or remove keys
-[ ! -z "${list_add_key}" ] && { . ${COMPIL_DIR}/Fadd_keys.sh ${NEW_CONF} add_key ${list_add_key}; }
-[ ! -z "${list_def_key}" ] && { . ${COMPIL_DIR}/Fdef_keys.sh ${NEW_CONF} def_key ${list_def_key}; }
-[ ! -z "${list_del_key}" ] && { . ${COMPIL_DIR}/Fdel_keys.sh ${NEW_CONF} del_key ${list_del_key}; }
-#- check that all keys are really existing...
+# CPP keys addition/removal
+[ -n "${list_add_key}" ] && ${COMPIL_DIR}/Fadd_keys.sh ${NEMO_TDIR}/${CUR_CONF} ${list_add_key}
+[ -n "${list_def_key}" ] && ${COMPIL_DIR}/Fdef_keys.sh ${NEMO_TDIR}/${CUR_CONF} ${list_def_key}
+[ -n "${list_del_key}" ] && ${COMPIL_DIR}/Fdel_keys.sh ${NEMO_TDIR}/${CUR_CONF} ${list_del_key}
+
+
+# CPP keys check
if [ $chk_key -eq 1 ] ; then
- for kk in $( cat ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm ); do
- if [ "$( echo $kk | cut -c 1-4 )" == "key_" ]; then
- kk=${kk/=*/}
- if [ ! $( grep -w $kk ${NEMO_TDIR}/${NEW_CONF}/BLD/full_key_list.txt ) ]; then
- echo
- echo "E R R O R : key "$kk" is not found in ${NEMO_TDIR}/${NEW_CONF}/WORK routines..."
- echo "we stop..."
- echo
- exit 1
- fi
- fi
+ for kk in $( sed -n "s/bld::tool::fppkeys \+//p" ${NEMO_TDIR}/${CUR_CONF}/cpp_${CUR_CONF}.fcm ); do
+ if ! grep -q $kk ${NEMO_TDIR}/${CUR_CONF}/BLD/full_key_list.txt; then
+ echo
+ echo "E R R O R : key "$kk" is not found in ${NEMO_TDIR}/${CUR_CONF}/WORK routines..."
+ echo "we stop..."
+ echo
+ exit 1
+ fi
done
fi
-#- At this stage cpp keys have been updated. we can check the arch file
-#- When used for the first time, choose a compiler ---
-. ${COMPIL_DIR}/Fcheck_archfile.sh ${NEMO_TDIR}/${NEW_CONF}/BLD/arch_nemo.fcm ${NEMO_TDIR}/${NEW_CONF}/BLD/cpp.fcm ${CMP_NAM} || exit 3
-#-
-#_ END OF CONFIGURATION PHASE
-#_
-#-
-#- Compile ---
+# CPP & arch files check
+ln -sf ${NEMO_TDIR}/${CUR_CONF}/cpp_${CUR_CONF}.fcm ${NEMO_TDIR}/${CUR_CONF}/BLD/cpp.fcm
+${COMPIL_DIR}/Fcheck_archfile.sh ${NEMO_TDIR}/${CUR_CONF}/BLD/arch_nemo.fcm ${NEMO_TDIR}/${CUR_CONF}/BLD/cpp.fcm ${MAIN_DIR}/arch/arch-${CMP_NAM}.fcm ${NEMO_DBG} || exit 3
+
+# Compilation
if [ "${NBR_PRC}" -gt 0 ]; then
- # We coose the default light file
- [ $x_nocdf -eq 1 ] && export USEBLD=bldxagxcdf.cfg || export USEBLD=bldxag.cfg
+ # choose & generate fcm cfg file
+ [ $x_nocdf -eq 1 ] && USEBLD=bldxagxcdf.cfg || USEBLD=bldxag.cfg
- # We look after agrif
- grep key_agrif ${NEMO_TDIR}/${NEW_CONF}/BLD/cpp.fcm 2>/dev/null && export AGRIFUSE=1 && export USEBLD=${USEBLD/xag/}
- . ${COMPIL_DIR}/Fprep_agrif.sh ${NEW_CONF} ${NEMO_TDIR} arch_nemo.fcm || exit 3
-
- ## if AGRIF we do a first preprocessing
- if [[ ${#x_c} -eq 0 && "$AGRIFUSE" -eq 1 ]]; then
- fcm build --ignore-lock -j 1 ${COMPIL_DIR}/bld_preproagr.cfg || exit 1
- echo ''
+ # AGRIF preprocessing
+ grep key_agrif ${NEMO_TDIR}/${CUR_CONF}/BLD/cpp.fcm 2>/dev/null && USEBLD=${USEBLD/xag/}
+ if [[ ! ${USEBLD} =~ "xag" ]]; then
+ ${COMPIL_DIR}/Fprep_agrif.sh ${MAIN_DIR} ${NEMO_TDIR}/${CUR_CONF} || exit 3
+
+ # compile & copy conv
+ sed -e "s~MAIN_DIR~${MAIN_DIR}~; s~NEMO_TDIR~${NEMO_TDIR}~; s~CUR_CONF~${CUR_CONF}~; s~COMPIL_DIR~${COMPIL_DIR}~" ${COMPIL_DIR}/conv.cfg > ${NEMO_TDIR}/${CUR_CONF}/BLD/conv.cfg
+ fcm build ${NEMO_TDIR}/${CUR_CONF}/BLD/conv.cfg || exit 1
+ ln -sfv ${MAIN_DIR}/ext/AGRIF/agrif_oce.in ${NEMO_TDIR}/${CUR_CONF}/AGRIFLIB/bin/conv ${NEMO_TDIR}/${CUR_CONF}/NEMOFILES/.
+
+ sed -e "s~MAIN_DIR~${MAIN_DIR}~; s~NEMO_TDIR~${NEMO_TDIR}~; s~CUR_CONF~${CUR_CONF}~; s~COMPIL_DIR~${COMPIL_DIR}~" ${COMPIL_DIR}/bld_preproagr.cfg > ${NEMO_TDIR}/${CUR_CONF}/BLD/bld_preproagr.cfg
+ fcm build --ignore-lock -j 1 ${NEMO_TDIR}/${CUR_CONF}/BLD/bld_preproagr.cfg || exit 1
+ echo
echo "---------------------------------"
echo "CONV preprocessing successfull !!"
echo "---------------------------------"
- echo ''
+ echo
fi
- fcm build ${x_c} --ignore-lock -v ${x_v} -j ${NBR_PRC} ${COMPIL_DIR}/$USEBLD || exit 1
+ sed -e "s~MAIN_DIR~${MAIN_DIR}~; s~NEMO_TDIR~${NEMO_TDIR}~; s~CUR_CONF~${CUR_CONF}~; s~COMPIL_DIR~${COMPIL_DIR}~" ${COMPIL_DIR}/${USEBLD} > ${NEMO_TDIR}/${CUR_CONF}/BLD/${USEBLD}
+ fcm build --ignore-lock -v ${x_v} -j ${NBR_PRC} ${NEMO_TDIR}/${CUR_CONF}/BLD/${USEBLD} || exit 1
- if [ -f ${NEMO_TDIR}/${NEW_CONF}/BLD/bin/nemo.exe ]; then
- ln -sf ${NEMO_TDIR}/${NEW_CONF}/BLD/bin/nemo.exe ${NEMO_TDIR}/${NEW_CONF}/EXP00/nemo
+ if [ -f ${NEMO_TDIR}/${CUR_CONF}/BLD/bin/nemo.exe ]; then
+ ln -sfv ${NEMO_TDIR}/${CUR_CONF}/BLD/bin/nemo.exe ${NEMO_TDIR}/${CUR_CONF}/EXP00/nemo
+ else
+ exit 1
fi
-
fi
-#- Unset variables
-${COMPIL_DIR}/Fclean_var.sh
+
+exit 0
diff --git a/mk/Fadd_keys.sh b/mk/Fadd_keys.sh
index e4fc8c78..d563a75a 100755
--- a/mk/Fadd_keys.sh
+++ b/mk/Fadd_keys.sh
@@ -62,16 +62,14 @@ set -o posix
# * creation
#
#-
- echo "Adding keys in : ${NEW_CONF}"
- for i in ${list_add_key} ; do
- if [ "$(cat ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "\<$i\>" )" -ne 0 ] ; then
- echo "key $i already present in cpp_${NEW_CONF}.fcm"
- else
- sed -e "s/$/ ${i}/" ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm > ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm.tmp
- mv ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm.tmp ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm
- echo "added key $i in ${NEW_CONF}"
- fi
- done
-
- unset -v list_add_key
+echo "Adding keys ${2} in : ${1}"
+
+for i in ${2} ; do
+ if [ "$(cat ${1}/cpp_$(basename ${1}).fcm | grep -c "\<$i\>" )" -ne 0 ] ; then
+ echo "key $i already present in cpp_$(basename ${1}).fcm"
+ else
+ sed -i "s/$/ ${i}/" ${1}/cpp_$(basename ${1}).fcm
+ echo "added key $i in $(basename ${1})"
+ fi
+done
diff --git a/mk/Fcheck_archfile.sh b/mk/Fcheck_archfile.sh
index f7aad910..b57a6aa3 100755
--- a/mk/Fcheck_archfile.sh
+++ b/mk/Fcheck_archfile.sh
@@ -118,7 +118,7 @@ if [ ${#3} -eq 0 ]; then # arch not specified
fi
fi
else
- nb=$( find ${MAIN_DIR}/arch -name arch-${3}.fcm -print | wc -l )
+ nb=$( find $(dirname ${3}) -name $(basename ${3}) -print | wc -l )
if [ $nb -eq 0 ]; then # no arch file found
echo "Warning !!!"
echo "Compiler not existing"
@@ -129,12 +129,12 @@ else
if [ $nb -gt 1 ]; then # more than 1 arch file found
echo "Warning !!!"
echo "more than 1 arch file for the same compiler have been found"
- find ${MAIN_DIR}/arch -name arch-${3}.fcm -print
+ find $(dirname ${3}) -name $(basename ${3}) -print
echo "keep only 1"
echo "EXITING..."
exit 1
fi
- myarch=$( find ${MAIN_DIR}/arch -name arch-${3}.fcm -print )
+ myarch=$( find $(dirname ${3}) -name $(basename ${3}) -print )
# we were already using this arch file ?
if [ "$myarch" == "$( cat $(dirname $1)/arch.history 2>/dev/null)" ]; then
if [ -f $1 ]; then
@@ -151,7 +151,7 @@ else
[ ${#mycpp} -ne 0 ] && cpeval ${myarch} $1
fi
# has myarch file been updated since we copied it in ${COMPIL_DIR}?
- myarch=$( find -L ${MAIN_DIR}/arch -cnewer $(basename $1) -name arch-${3}.fcm -print )
+ myarch=$( find -L $(dirname ${3}) -cnewer $(basename $1) -name $(basename ${3}) -print )
[ ${#myarch} -ne 0 ] && cpeval ${myarch} $1
else
cpeval ${myarch} $1
@@ -185,7 +185,7 @@ then
fi
#- in TOOLS directory looking for USE xios
else
- use_iom=$( egrep --exclude-dir=.svn -r USE ${MAIN_DIR}/src/* | grep -c xios )
+ use_iom=$( egrep --exclude-dir=.svn -r USE $(dirname ${3})/../src/* | grep -c xios )
have_lxios=$( sed -e "s/#.*$//" $1 | grep -c "\-lxios" )
if [[ ( $use_iom -eq 0 ) || ( $have_lxios != 1 ) ]]
then
@@ -216,7 +216,7 @@ do
done
# Nemo debug ?
-if [ -n "${NEMO_DBG}" ]; then
+if [ -n "${4}" ]; then
if (! grep -q "^%DEBUG_FCFLAGS" $1 ); then
echo "ERROR: You must defined '%DEBUG_FCFLAGS' in your arch file if you want to compile Nemo in debug mode using '-d' option"
exit 1
diff --git a/mk/Fcheck_config.sh b/mk/Fcheck_config.sh
index 996047f5..24b26104 100755
--- a/mk/Fcheck_config.sh
+++ b/mk/Fcheck_config.sh
@@ -69,18 +69,18 @@ declare -a ZTAB
if [ ${#2} -eq 0 ]; then
tail -1 ${CONFIG_DIR}/$1 > ${CONFIG_DIR}/cfg.tmp
read -a ZTAB < ${CONFIG_DIR}/cfg.tmp
- NEW_CONF=${ZTAB[0]} ; TAB=( ${ZTAB[@]:1} )
+ CUR_CONF=${ZTAB[0]} ; TAB=( ${ZTAB[@]:1} )
\rm ${CONFIG_DIR}/cfg.tmp
echo "Warning !!!"
echo "No configuration specified"
echo "Use makenemo -n MYCONFIG"
echo "or makenemo -h for help"
- echo "Using default configuration : ${NEW_CONF}"
+ echo "Using default configuration : ${CUR_CONF}"
fi
if [ "$1" == cfg.txt ]; then
- cat ${CONFIG_DIR}/$1 | grep "${NEW_CONF} " > ${CONFIG_DIR}/cfg.tmp
+ cat ${CONFIG_DIR}/$1 | grep "${CUR_CONF} " > ${CONFIG_DIR}/cfg.tmp
read -a ZTAB < ${CONFIG_DIR}/cfg.tmp
- NEW_CONF=${ZTAB[0]} ; TAB=( ${ZTAB[@]:1} )
+ CUR_CONF=${ZTAB[0]} ; TAB=( ${ZTAB[@]:1} )
\rm ${CONFIG_DIR}/cfg.tmp
fi
diff --git a/mk/Fclean_config.sh b/mk/Fclean_config.sh
index af5d99d9..19ca4f06 100755
--- a/mk/Fclean_config.sh
+++ b/mk/Fclean_config.sh
@@ -63,31 +63,23 @@ set -o posix
#
#-
-NEW_CONF=${x_n}
+CONF=$(basename ${1})
+CONFIG_DIR=$(dirname ${1})
-if [ ${#NEW_CONF} -eq 0 ] ; then
+if [ ${#CONF} -eq 0 ] ; then
echo " "
echo "No configuration specified, please use makenemo -n CONFIG clean_config "
else
echo " "
- echo "Are you sure that you want to remove this directory $NEW_CONF? [y/n] "
+ echo "Are you sure that you want to remove this directory $CONF? [y/n] "
read answer
answer=`echo $answer | sed 's/^[y].*$/y/'`
if [ -z "$answer" -o "x$answer" = "xy" ]; then
- ## testing if configuration exists
- if [[ ! $( grep "${NEW_CONF} " */work_cfgs.txt ) ]] ; then
- echo "The configuration ${NEW_CONF} does not exist in file work_cfgs.txt"
- echo "No removing configuration"
- echo " "
- else
- CONFIG_DIR=${MAIN_DIR}/$( grep -l "${NEW_CONF} " */work_cfgs.txt | cut -d/ -f1 )
- rm -rf ${CONFIG_DIR}/${NEW_CONF}
- sed -e "/${NEW_CONF} /d" ${CONFIG_DIR}/work_cfgs.txt > ${CONFIG_DIR}/work_cfgs.tmp
- mv ${CONFIG_DIR}/work_cfgs.tmp ${CONFIG_DIR}/work_cfgs.txt
- echo "${NEW_CONF} configuration REMOVED"
- fi
+ rm -rf ${CONFIG_DIR}/${CONF}
+ sed -i "/^${CONF} /d" ${CONFIG_DIR}/work_cfgs.txt > ${CONFIG_DIR}/work_cfgs.tmp
+ echo "${CONF} configuration REMOVED"
else
echo " "
@@ -95,5 +87,3 @@ else
fi
fi
-
-unset -v answer
diff --git a/mk/Fclean_var.sh b/mk/Fclean_var.sh
deleted file mode 100755
index eb624c71..00000000
--- a/mk/Fclean_var.sh
+++ /dev/null
@@ -1,68 +0,0 @@
-#!/bin/bash
-#set -x
-set -o posix
-#set -u
-#set -e
-#+
-#
-# =============
-# Fclean_var.sh
-# =============
-#
-# ----------------------------
-# Clean environment variables
-# ----------------------------
-#
-# SYNOPSIS
-# ========
-#
-# ::
-#
-# $ Fclean_var.sh
-#
-#
-# DESCRIPTION
-# ===========
-#
-#
-# Clean environment variables
-#
-# EXAMPLES
-# ========
-#
-# ::
-#
-# $ ./Fclean_var.sh
-#
-#
-# TODO
-# ====
-#
-# option debug
-#
-#
-# EVOLUTIONS
-# ==========
-#
-# $Id: Fclean_var.sh 4990 2014-12-15 16:42:49Z timgraham $
-#
-#
-#
-# * creation
-#
-#-
-#- Unset variables
-
-unset -v NSTOP
-unset -v TAB
-unset -v NEW_CONF
-unset -v REF_CONF
-unset -v CMP_NAM
-unset -v NBR_PRC
-unset -v NEM_SUBDIR
-unset -v MAIN_DIR
-unset -v CONFIG_DIR
-unset -v TOOLS_DIR
-unset -v COMPIL_DIR
-unset -v NEMO_DIR
-unset -v USEBLD
diff --git a/mk/Fdef_keys.sh b/mk/Fdef_keys.sh
index bf94a481..482db952 100755
--- a/mk/Fdef_keys.sh
+++ b/mk/Fdef_keys.sh
@@ -56,8 +56,5 @@ set -o posix
#
#-
-echo "Defining keys in : ${NEW_CONF}"
-
-echo " bld::tool::fppkeys ${list_def_key}" > ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm
-
-unset -v list_def_key
+echo "Defining keys in : $(dirname ${1})"
+echo " bld::tool::fppkeys ${2}" > ${1}/cpp_$(basename ${1}).fcm
diff --git a/mk/Fdel_keys.sh b/mk/Fdel_keys.sh
index ff95aa2b..4bbcd38b 100755
--- a/mk/Fdel_keys.sh
+++ b/mk/Fdel_keys.sh
@@ -60,22 +60,13 @@ set -o posix
#
#-
-echo "Removing keys in : ${NEW_CONF}"
+echo "Removing keys ${2} in : ${1}"
-for i in ${list_del_key} ; do
-
- if [ "$(echo ${i} | grep -c key_nproc )" -ne 0 ]; then
- sed -e "s/key_nproc[ij]=.* //" ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm \
- > ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm.tmp
- mv ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm.tmp ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm
- echo " "
- elif [ "$(cat ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "$i" )" -ne 0 ]; then
- sed -e "s/\b${i}\b//" ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm \
- > ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm.tmp
- mv ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm.tmp ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm
- echo "deleted key $i in ${NEW_CONF}"
+for i in ${2} ; do
+ if [ "$(echo ${i} | grep -c key_nproc )" -gt 0 ]; then
+ sed -i "s/key_nproc[ij]=.* //" ${1}/cpp_$(basename ${1}).fcm
+ elif [ "$(cat ${1}/cpp_$(basename ${1}).fcm | grep -c "$i")" -gt 0 ]; then
+ sed -i "s/\b${i}\b//" ${1}/cpp_$(basename ${1}).fcm
+ echo "deleted key $i in $(basename ${1})"
fi
-
done
-
-unset -v list_del_key
diff --git a/mk/Flist_archfile.sh b/mk/Flist_archfile.sh
index 46c570be..506f620b 100755
--- a/mk/Flist_archfile.sh
+++ b/mk/Flist_archfile.sh
@@ -67,11 +67,11 @@ archfile_loop() {
echo -e "\n ¤ Generic computing architectures"
-archfile_loop ${MAIN_DIR}/arch
+archfile_loop ${1}/arch
-for dir in $( ls ${MAIN_DIR}/arch | grep -v "fcm$" ); do
- echo -e "\n ¤ Specific HPC architectures for "${dir}
- archfile_loop ${MAIN_DIR}/arch/$dir
+for dir in $( ls ${1}/arch | grep -v "fcm$" ); do
+ echo -e "\n ¤ Specific HPC architectures for "${dir}
+ archfile_loop ${1}/arch/$dir
done
echo
diff --git a/mk/Flist_cfgs.sh b/mk/Flist_cfgs.sh
index 34c8b36c..33ca7cc2 100755
--- a/mk/Flist_cfgs.sh
+++ b/mk/Flist_cfgs.sh
@@ -1,14 +1,14 @@
#!/bin/bash
echo -e "\n ¤ Reference configurations with default sub-components (can be updated by a new set)"
-cat ${MAIN_DIR}/cfgs/ref_cfgs.txt \
+cat ${1}/cfgs/ref_cfgs.txt \
| awk '{printf "%-20s", $1}{$1 = ""; printf "%s\n", $0}'
echo -e "\n ¤ Demonstrations cases (see https://github.com/sflavoni/NEMO-test-cases for more)"
-cat ${MAIN_DIR}/tests/demo_cfgs.txt \
+cat ${1}/tests/demo_cfgs.txt \
| awk '{printf "%-20s", $1}{$1 = ""; printf "%s\n", $0}'
echo -e "\n ¤ Available sub-components ('OCE' is mandatory in any set)"
-ls ${MAIN_DIR}/src | awk -F/ '{ print $NF }' | column
+ls ${1}/src | awk -F/ '{ print $NF }' | column
echo
diff --git a/mk/Fmake_WORK.sh b/mk/Fmake_WORK.sh
index eee618ce..afa6a46b 100755
--- a/mk/Fmake_WORK.sh
+++ b/mk/Fmake_WORK.sh
@@ -34,7 +34,7 @@ set -o posix
#
# Make the WORK directory:
#
-# - Create line in NEW_CONF/WORK
+# - Create line in CUR_CONF/WORK
# - Use specified sub-directories previously
# - OCE has to be done first !!!
#
@@ -63,39 +63,37 @@ set -o posix
# * creation
#
#-
-declare ZSRC=${@}
-ZCONF=${NEMO_TDIR}/${NEW_CONF}
-ZTAB=${NEM_SUBDIR[@]}
-declare NDIR=${#ZTAB[@]}
+ZTAB=( $1 )
+ZSRC=( $2 )
+ZCONF=$3
+NDIR=${#ZTAB[@]}
+echo ''
echo 'Creating '${ZCONF}'/WORK = '${ZTAB[*]}' for '${ZCONF##*/}
+echo ''
[ ! -d ${ZCONF}/MY_SRC ] && \mkdir -p ${ZCONF}/MY_SRC
+[ ! -d ${ZCONF}/BLD ] && \mkdir -p ${ZCONF}/BLD
[ -d ${ZCONF}/WORK ] || \mkdir -p ${ZCONF}/WORK
for comp in ${ZTAB[*]}; do
- find ${NEMO_DIR}/$comp -name \*.[Ffh]90 -exec ln -sf {} ${ZCONF}/WORK \;
+ find $comp -name \*.[Ffh]90 -exec ln -sf {} ${ZCONF}/WORK \;
done
-cd ${ZCONF}
-for ZDIR in ${ZSRC[@]}; do
- if [ -d ${ZDIR} ] ; then
+for ZDIR in ${ZSRC[*]}; do
+ if [ -d ${ZCONF}/${ZDIR} ] ; then
+ d=${ZCONF}/${ZDIR}
+ elif [ -d ${ZDIR} ] ; then
d=${ZDIR}
- else
- d='MY_SRC'
- echo 'External directory for MY_SRC unspecified or does not exist. Using default.'
fi
for ff in `(find ${d} -name \*.[Ffh]90 2>/dev/null)`
do
if [ "$ff" != "${ff#/}" ]; then
- ln -sf $ff WORK/.
+ ln -sf $ff ${ZCONF}/WORK/.
else
- ln -sf ../$ff WORK/.
+ ln -sf ../$ff ${ZCONF}/WORK/.
fi
done
echo ${d}' content is linked to '${ZCONF}/WORK
done
-cd -
-
-unset -v ZCONF ZTAB NDIR
diff --git a/mk/Fmake_bld.sh b/mk/Fmake_bld.sh
deleted file mode 100755
index bd4b331c..00000000
--- a/mk/Fmake_bld.sh
+++ /dev/null
@@ -1,63 +0,0 @@
-#!/bin/bash
-#set -x
-set -o posix
-#set -u
-#set -e
-#+
-#
-# ============
-# Fmake_bld.sh
-# ============
-#
-# --------------------
-# Make build directory
-# --------------------
-#
-# SYNOPSIS
-# ========
-#
-# ::
-#
-# $ Fmake_bld.sh
-#
-#
-# DESCRIPTION
-# ===========
-#
-#
-# Under CONFIG_NAME :
-# - Make the build directory
-# - Create repositories needed :
-# - BLD for compilation
-#
-# A tmpdir can be specified for memory issues.
-#
-#
-# EXAMPLES
-# ========
-#
-# ::
-#
-# $ ./Fmake_bld.sh NEMOGCM/cfgs GYRE /usr/tmp
-#
-#
-# TODO
-# ====
-#
-# option debug
-#
-#
-# EVOLUTIONS
-# ==========
-#
-# $Id: Fmake_bld.sh 9651 2018-05-28 06:47:14Z nicolasmartin $
-#
-#
-#
-# * creation
-#
-#-
-[ ! -d ${3}/${2} ] && \mkdir -p ${3}/${2}
-[ ! -d ${3}/${2}/BLD ] && \mkdir -p ${3}/${2}/BLD
-[ -f ${3}/${2}/cpp_${2}.fcm ] && ln -sf ${3}/${2}/cpp_${2}.fcm ${3}/${2}/BLD/cpp.fcm
-rm -f ${1}/${2}/BLD/fcm.bld.lock
diff --git a/mk/Fmake_tools_bld.sh b/mk/Fmake_tools_bld.sh
index 3a9a5041..a2da0c90 100755
--- a/mk/Fmake_tools_bld.sh
+++ b/mk/Fmake_tools_bld.sh
@@ -63,4 +63,4 @@ set -o posix
# enforce presence of cpp_tools.fcm (write a blank one if not present in the tools directory)
# cp instead of ln to avoid overwiting previous tool cpp_XXX.fcm file when compiling a file without cpp_YYY.fcm file.
[ -f ${3}/${2}/cpp_${2}.fcm ] && ln -sf -f ${3}/${2}/cpp_${2}.fcm ${3}/${2}/BLD/cpp_tools.fcm || echo 'bld::tool::fppkeys ' > ${3}/${2}/BLD/cpp_tools.fcm
-rm -f ${1}/${NEW_CONF}/BLD/fcm.bld.lock
+rm -f ${1}/${CUR_CONF}/BLD/fcm.bld.lock
diff --git a/mk/Fprep_agrif.sh b/mk/Fprep_agrif.sh
index 64375c4f..75025edd 100755
--- a/mk/Fprep_agrif.sh
+++ b/mk/Fprep_agrif.sh
@@ -55,26 +55,13 @@ set -o posix
#-
#- AGRIF conv
-if [ "$AGRIFUSE" == 1 ]; then
+
#-MPI for AGRIF
-if [ ! -f ${MAIN_DIR}/ext/AGRIF/nemo_mpi.h ];then
- echo '#if ! defined key_mpi_off' > ${MAIN_DIR}/ext/AGRIF/nemo_mpi.h
- echo '#define AGRIF_MPI' >> ${MAIN_DIR}/ext/AGRIF/nemo_mpi.h
- echo '#endif' >> ${MAIN_DIR}/ext/AGRIF/nemo_mpi.h
+if [ ! -f ${1}/ext/AGRIF/nemo_mpi.h ]; then
+ echo '#if ! defined key_mpi_off' > ${1}/ext/AGRIF/nemo_mpi.h
+ echo '#define AGRIF_MPI' >> ${1}/ext/AGRIF/nemo_mpi.h
+ echo '#endif' >> ${1}/ext/AGRIF/nemo_mpi.h
fi
- #- CONV
-export MYARCH=$3
-fcm build ${COMPIL_DIR}/conv.cfg || exit 1
-#C_COMPILER=${CC-cc}
-#gmake CC=${C_COMPILER} -C ${MAIN_DIR}/ext/AGRIF/LIB
-
#- AGRIF sources
-[ ! -d $2/$1/NEMOFILES ] && mkdir $2/$1/NEMOFILES
-[ ! -d $2/$1/NEMOFILES/AGRIF_INC ] && mkdir $2/$1/NEMOFILES/AGRIF_INC
-[ ! -d $2/$1/NEMOFILES/AGRIF_MODELFILES ] && mkdir $2/$1/NEMOFILES/AGRIF_MODELFILES
-cp -f -r ${MAIN_DIR}/ext/AGRIF/agrif_oce.in $2/$1/NEMOFILES/
-#cp -f -r ${MAIN_DIR}/ext/AGRIF/conv $2/$1/NEMOFILES/
-cp -f -r $2/$1/AGRIFLIB/bin/conv $2/$1/NEMOFILES/
-
-fi
+mkdir -p ${2}/NEMOFILES
diff --git a/mk/README b/mk/README
deleted file mode 100644
index b54b12da..00000000
--- a/mk/README
+++ /dev/null
@@ -1,7 +0,0 @@
-CSHRC :
-setenv PATH ~/NEMOGCM/TOOLS:$PATH
-setenv NEMO_TDIR /users/rblod/tmp
-
-BASH :
-export PATH=$PATH:~/NEMOGCM/TOOLS'
-export NEMO_TDIR=/users/rblod/tmp
diff --git a/mk/agrifpp.sh b/mk/agrifpp.sh
index 308125ce..5ff5bcdb 100755
--- a/mk/agrifpp.sh
+++ b/mk/agrifpp.sh
@@ -56,12 +56,13 @@ set -o posix
#-
MYDIR=$1
MYFILE=$(basename "$2")
+
if [ "$MYFILE" == "agrif2model.f90" ];then
- if [ -d ${MYDIR}/${NEW_CONF}/WORK ]; then
- \cp ${MYDIR}/${NEW_CONF}/WORK/${MYFILE/.f90/.F90} ${MYDIR}/${NEW_CONF}/NEMOFILES/obj/$MYFILE
+ if [ -d ${MYDIR}/WORK ]; then
+ \cp ${MYDIR}//WORK/${MYFILE/.f90/.F90} ${MYDIR}/NEMOFILES/obj/$MYFILE
else
- \cp ${CONFIG_DIR}/${NEW_CONF}/WORK/${MYFILE/.f90/.F90} ${MYDIR}/${NEW_CONF}/NEMOFILES/obj/$MYFILE
+ \cp ${MYDIR}/WORK/${MYFILE/.f90/.F90} ${MYDIR}/NEMOFILES/obj/$MYFILE
fi
else
-cd ${MYDIR}/${NEW_CONF}/NEMOFILES/ppsrc/nemo ; ${MYDIR}/${NEW_CONF}/NEMOFILES/conv ${MYDIR}/${NEW_CONF}/NEMOFILES/agrif_oce.in -rm -incdir ${MYDIR}/${NEW_CONF}/NEMOFILES/inc -comdirout ${MYDIR}/${NEW_CONF}/NEMOFILES/obj -convfile ${MYFILE} > /dev/null
+ cd ${MYDIR}/NEMOFILES/ppsrc/nemo ; ${MYDIR}/NEMOFILES/conv ${MYDIR}/NEMOFILES/agrif_oce.in -rm -incdir ${MYDIR}/NEMOFILES/inc -comdirout ${MYDIR}/NEMOFILES/obj -convfile ${MYFILE} > /dev/null
fi
diff --git a/mk/bld.cfg b/mk/bld.cfg
index ebc688aa..e239f0dc 100644
--- a/mk/bld.cfg
+++ b/mk/bld.cfg
@@ -7,22 +7,21 @@ cfg::version 1.0
# Build information
# ------------------------------------------------------------------------------
-inc $NEMO_TDIR/$NEW_CONF/BLD/arch_nemo.fcm
-inc $NEMO_TDIR/$NEW_CONF/BLD/cpp.fcm
+inc NEMO_TDIR/CUR_CONF/BLD/arch_nemo.fcm
+inc NEMO_TDIR/CUR_CONF/BLD/cpp.fcm
search_src 1
-src::ioipsl $MAIN_DIR/ext/IOIPSL/src
-src::agrif $MAIN_DIR/ext/AGRIF/AGRIF_FILES
-src::nemo $NEMO_TDIR/$NEW_CONF/NEMOFILES/obj
-src::ppr_1d $MAIN_DIR/ext/PPR/src
+src::ioipsl MAIN_DIR/ext/IOIPSL/src
+src::ppr_1d MAIN_DIR/ext/PPR/src
+src::agrif MAIN_DIR/ext/AGRIF/AGRIF_FILES
+src::nemo NEMO_TDIR/CUR_CONF/NEMOFILES/obj
-
-bld::target nemo.exe
+bld::target nemo.exe
bld::exe_dep
-dir::root $NEMO_TDIR/$NEW_CONF/BLD
+dir::root NEMO_TDIR/CUR_CONF/BLD
bld::tool::cpp %CPP
@@ -38,13 +37,13 @@ bld::tool::make %MK
# Pre-process code before analysing dependencies
bld::pp::ioipsl 1
-bld::pp::nemo 1
-bld::pp::agrif 1
bld::pp::ppr_1d 1
-bld::tool::fppflags::nemo %FPPFLAGS -I$NEMO_TDIR/$NEW_CONF/NEMOFILES/inc
-bld::tool::fppflags::ioipsl %FPPFLAGS
-bld::tool::fppflags::agrif %FPPFLAGS -include ${MAIN_DIR}/ext/AGRIF/nemo_mpi.h
-bld::tool::fppflags::ppr_1d %FPPFLAGS
+bld::pp::agrif 1
+bld::pp::nemo 1
+bld::tool::fppflags::ioipsl %FPPFLAGS
+bld::tool::fppflags::ppr_1d %FPPFLAGS
+bld::tool::fppflags::agrif %FPPFLAGS -include MAIN_DIR/ext/AGRIF/nemo_mpi.h
+bld::tool::fppflags::nemo %FPPFLAGS -INEMO_TDIR/CUR_CONF/NEMOFILES/inc
# Ignore the following dependencies
bld::excl_dep inc::netcdf.inc
@@ -60,6 +59,7 @@ bld::excl_dep use::mod_oasis
bld::excl_dep use::mkl_dfti
bld::excl_dep use::cudafor
bld::excl_dep use::openacc
+
# Don't generate interface files
bld::tool::geninterface none
diff --git a/mk/bld_preproagr.cfg b/mk/bld_preproagr.cfg
index 3f015aa1..cb99ab0f 100644
--- a/mk/bld_preproagr.cfg
+++ b/mk/bld_preproagr.cfg
@@ -7,20 +7,20 @@ cfg::version 1.0
# Build information
# ------------------------------------------------------------------------------
-inc $NEMO_TDIR/$NEW_CONF/BLD/arch_nemo.fcm
-inc $NEMO_TDIR/$NEW_CONF/BLD/cpp.fcm
+inc NEMO_TDIR/CUR_CONF/BLD/arch_nemo.fcm
+inc NEMO_TDIR/CUR_CONF/BLD/cpp.fcm
search_src 1
-src::nemo $NEMO_TDIR/$NEW_CONF/WORK
+src::nemo NEMO_TDIR/CUR_CONF/WORK
bld::target lib_cray.f90 nemo.f90 agrif_user.f90 agrif2model.f90
-dir::root $NEMO_TDIR/$NEW_CONF/NEMOFILES
+dir::root NEMO_TDIR/CUR_CONF/NEMOFILES
bld::tool::fc_output
bld::tool::fc_compile
bld::tool::fc_include
-bld::tool::fc $COMPIL_DIR/agrifpp.sh ${NEMO_TDIR}
+bld::tool::fc COMPIL_DIR/agrifpp.sh NEMO_TDIR/CUR_CONF
bld::tool::fflags
bld::tool::ld
bld::tool::ldflags
diff --git a/mk/bld_preproagr_tools.cfg b/mk/bld_preproagr_tools.cfg
index cc7eb552..32cd0956 100644
--- a/mk/bld_preproagr_tools.cfg
+++ b/mk/bld_preproagr_tools.cfg
@@ -7,20 +7,21 @@ cfg::version 1.0
# Build information
# ------------------------------------------------------------------------------
-inc $COMPIL_DIR/arch_tools.fcm
-inc $COMPIL_DIR/cpp_tools.fcm
+inc TOOLS_DIR/CUR_CONF/BLD/arch_tools.fcm
+inc TOOLS_DIR/CUR_CONF/BLD/cpp_tools.fcm
+
search_src 1
-src::nemo $TOOLS_DIR/$NEW_CONF/src
+src::nemo TOOLS_DIR/CUR_CONF/src
bld::target make_domain_cfg.f90 agrif_user.f90 agrif2model.f90
-dir::root $TOOLS_DIR/$NEW_CONF/NEMOFILES
+dir::root TOOLS_DIR/CUR_CONF/NEMOFILES
bld::tool::fc_output
bld::tool::fc_compile
bld::tool::fc_include
-bld::tool::fc $COMPIL_DIR/agrifpp.sh $TOOLS_DIR
+bld::tool::fc COMPIL_DIR/agrifpp.sh TOOLS_DIR
bld::tool::fflags
bld::tool::ld
bld::tool::ldflags
diff --git a/mk/bld_tools.cfg b/mk/bld_tools.cfg
index aa204b4c..4e7db957 100644
--- a/mk/bld_tools.cfg
+++ b/mk/bld_tools.cfg
@@ -7,25 +7,22 @@ cfg::version 1.0
# Build information
# ------------------------------------------------------------------------------
-inc $COMPIL_DIR/arch_tools.fcm
-inc $COMPIL_DIR/cpp_tools.fcm
+inc TOOLS_DIR/CUR_CONF/BLD/arch_tools.fcm
+inc TOOLS_DIR/CUR_CONF/BLD/cpp_tools.fcm
search_src 1
-src::agrif $MAIN_DIR/ext/AGRIF/AGRIF_FILES
-src::nemo $TOOLS_DIR/$NEW_CONF/NEMOFILES/obj
-
+src::agrif MAIN_DIR/ext/AGRIF/AGRIF_FILES
+src::nemo TOOLS_DIR/CUR_CONF/NEMOFILES/obj
bld::target make_domain_cfg.exe
bld::exe_dep
-
-dir::root $TOOLS_DIR/$NEW_CONF/BLD
-
+dir::root TOOLS_DIR/CUR_CONF/BLD
bld::tool::cpp %CPP
bld::tool::fpp %CPP
-bld::tool::fc %FC
+bld::tool::fc %FC
bld::tool::fflags %FCFLAGS %USER_INC
bld::tool::ld %LD
bld::tool::ldflags %LDFLAGS %USER_LIB
@@ -36,11 +33,8 @@ bld::tool::make %MK
# Pre-process code before analysing dependencies
bld::pp::nemo 1
bld::pp::agrif 1
-bld::tool::fppflags::nemo %FPPFLAGS -I$TOOLS_DIR/$NEW_CONF/NEMOFILES/inc
-bld::tool::fppflags::agrif %FPPFLAGS -include ${MAIN_DIR}/ext/AGRIF/nemo_mpi.h
-
-
-
+bld::tool::fppflags::nemo %FPPFLAGS -ITOOLS_DIR/CUR_CONF/NEMOFILES/inc
+bld::tool::fppflags::agrif %FPPFLAGS -include MAIN_DIR/ext/AGRIF/nemo_mpi.h
# Ignore the following dependencies
bld::excl_dep inc::netcdf.inc
diff --git a/mk/bldxag.cfg b/mk/bldxag.cfg
index 78a775d5..d305520a 100644
--- a/mk/bldxag.cfg
+++ b/mk/bldxag.cfg
@@ -7,20 +7,20 @@ cfg::version 1.0
# Build information
# ------------------------------------------------------------------------------
-inc $NEMO_TDIR/$NEW_CONF/BLD/arch_nemo.fcm
-inc $NEMO_TDIR/$NEW_CONF/BLD/cpp.fcm
+inc NEMO_TDIR/CUR_CONF/BLD/arch_nemo.fcm
+inc NEMO_TDIR/CUR_CONF/BLD/cpp.fcm
search_src 1
-src::ioipsl $MAIN_DIR/ext/IOIPSL/src
-src::nemo $NEMO_TDIR/$NEW_CONF/WORK
-src::ppr_1d $MAIN_DIR/ext/PPR/src
+src::ioipsl MAIN_DIR/ext/IOIPSL/src
+src::ppr_1d MAIN_DIR/ext/PPR/src
+src::nemo NEMO_TDIR/CUR_CONF/WORK
bld::target nemo.exe
bld::exe_dep
-dir::root $NEMO_TDIR/$NEW_CONF/BLD
+dir::root NEMO_TDIR/CUR_CONF/BLD
bld::tool::cpp %CPP
@@ -35,11 +35,11 @@ bld::tool::make %MK
# Pre-process code before analysing dependencies
bld::pp::ioipsl 1
-bld::pp::nemo 1
bld::pp::ppr_1d 1
-bld::tool::fppflags::nemo %FPPFLAGS
+bld::pp::nemo 1
bld::tool::fppflags::ioipsl %FPPFLAGS
bld::tool::fppflags::ppr_1d %FPPFLAGS
+bld::tool::fppflags::nemo %FPPFLAGS
# Ignore the following dependencies
bld::excl_dep inc::netcdf.inc
@@ -55,6 +55,7 @@ bld::excl_dep use::mod_oasis
bld::excl_dep use::mkl_dfti
bld::excl_dep use::cudafor
bld::excl_dep use::openacc
+
# Don't generate interface files
bld::tool::geninterface none
@@ -66,4 +67,3 @@ bld::outfile_ext::mod .mod
# rename executable to nemo.exe
bld::exe_name::model nemo.exe
-
diff --git a/mk/bldxag_tools.cfg b/mk/bldxag_tools.cfg
index 7f54517b..93612cc7 100644
--- a/mk/bldxag_tools.cfg
+++ b/mk/bldxag_tools.cfg
@@ -7,14 +7,14 @@ cfg::version 1.0
# Build information
# ------------------------------------------------------------------------------
-inc $TOOLS_DIR/$NEW_CONF/BLD/arch_tools.fcm
-inc $TOOLS_DIR/$NEW_CONF/BLD/cpp_tools.fcm
+inc TOOLS_DIR/CUR_CONF/BLD/arch_tools.fcm
+inc TOOLS_DIR/CUR_CONF/BLD/cpp_tools.fcm
search_src 1
-src::nemo $TOOLS_DIR/$NEW_CONF/src
+src::nemo TOOLS_DIR/CUR_CONF/src
-dir::root $TOOLS_DIR/$NEW_CONF/BLD
+dir::root TOOLS_DIR/CUR_CONF/BLD
bld::tool::cpp %CPP
bld::tool::fpp %CPP
diff --git a/mk/bldxagxcdf.cfg b/mk/bldxagxcdf.cfg
index 28361348..b0cccd23 100644
--- a/mk/bldxagxcdf.cfg
+++ b/mk/bldxagxcdf.cfg
@@ -7,21 +7,21 @@ cfg::version 1.0
# Build information
# ------------------------------------------------------------------------------
-inc $NEMO_TDIR/$NEW_CONF/BLD/arch_nemo.fcm
-inc $NEMO_TDIR/$NEW_CONF/BLD/cpp.fcm
+inc NEMO_TDIR/CUR_CONF/BLD/arch_nemo.fcm
+inc NEMO_TDIR/CUR_CONF/BLD/cpp.fcm
search_src 1
-src::nocdf $MAIN_DIR/ext/DUMMY_NETCDF
-src::ioipsl $MAIN_DIR/ext/IOIPSL/src
-src::nemo $CONFIG_DIR/$NEW_CONF/WORK
-src::ppr_1d $MAIN_DIR/ext/PPR/src
+src::nocdf MAIN_DIR/ext/DUMMY_NETCDF
+src::ioipsl MAIN_DIR/ext/IOIPSL/src
+src::ppr_1d MAIN_DIR/ext/PPR/src
+src::nemo NEMO_TDIR/CUR_CONF/WORK
bld::target nemo.exe
bld::exe_dep
-dir::root $NEMO_TDIR/$NEW_CONF/BLD
+dir::root NEMO_TDIR/CUR_CONF/BLD
bld::tool::cpp %CPP
@@ -37,12 +37,12 @@ bld::tool::make %MK
# Pre-process code before analysing dependencies
bld::pp::nocdf 1
bld::pp::ioipsl 1
-bld::pp::nemo 1
bld::pp::ppr_1d 1
-bld::tool::fppflags::nemo %FPPFLAGS
+bld::pp::nemo 1
bld::tool::fppflags::nocdf %FPPFLAGS
bld::tool::fppflags::ioipsl %FPPFLAGS
-bld::tool::fppflags::ppr_1d %FPPFLAGS
+bld::tool::fppflags::ppr_1d %FPPFLAGS
+bld::tool::fppflags::nemo %FPPFLAGS
# Ignore the following dependencies
bld::excl_dep inc::VT.inc
@@ -55,6 +55,7 @@ bld::excl_dep use::mod_oasis
bld::excl_dep use::mkl_dfti
bld::excl_dep use::cudafor
bld::excl_dep use::openacc
+
# Don't generate interface files
bld::tool::geninterface none
@@ -66,4 +67,3 @@ bld::outfile_ext::mod .mod
# rename executable to nemo.exe
bld::exe_name::model nemo.exe
-
diff --git a/mk/bldxcdf.cfg b/mk/bldxcdf.cfg
index 5a175b45..459e0a15 100644
--- a/mk/bldxcdf.cfg
+++ b/mk/bldxcdf.cfg
@@ -7,23 +7,22 @@ cfg::version 1.0
# Build information
# ------------------------------------------------------------------------------
-inc $NEMO_TDIR/$NEW_CONF/BLD/arch_nemo.fcm
-inc $NEMO_TDIR/$NEW_CONF/BLD/cpp.fcm
+inc NEMO_TDIR/CUR_CONF/BLD/arch_nemo.fcm
+inc NEMO_TDIR/CUR_CONF/BLD/cpp.fcm
search_src 1
-src::nocdf $MAIN_DIR/ext/DUMMY_NETCDF
-src::ioipsl $MAIN_DIR/ext/IOIPSL/src
-src::agrif $MAIN_DIR/ext/AGRIF/AGRIF_FILES
-src::nemo $CONFIG_DIR/$NEW_CONF/NEMOFILES/obj
-src::ppr_1d $MAIN_DIR/ext/PPR/src
+src::nocdf MAIN_DIR/ext/DUMMY_NETCDF
+src::ioipsl MAIN_DIR/ext/IOIPSL/src
+src::ppr_1d MAIN_DIR/ext/PPR/src
+src::agrif MAIN_DIR/ext/AGRIF/AGRIF_FILES
+src::nemo NEMO_TDIR/CUR_CONF/NEMOFILES/obj
-
-bld::target nemo.exe
+bld::target nemo.exe
bld::exe_dep
-dir::root $NEMO_TDIR/$NEW_CONF/BLD
+dir::root NEMO_TDIR/CUR_CONF/BLD
bld::tool::cpp %CPP
@@ -40,14 +39,14 @@ bld::tool::make %MK
# Pre-process code before analysing dependencies
bld::pp::nocdf 1
bld::pp::ioipsl 1
-bld::pp::nemo 1
-bld::pp::agrif 1
bld::pp::ppr_1d 1
-bld::tool::fppflags::nemo %FPPFLAGS -I$CONFIG_DIR/$NEW_CONF/NEMOFILES/inc
+bld::pp::agrif 1
+bld::pp::nemo 1
bld::tool::fppflags::nocdf %FPPFLAGS
bld::tool::fppflags::ioipsl %FPPFLAGS
-bld::tool::fppflags::agrif %FPPFLAGS -include ${MAIN_DIR}/ext/AGRIF/nemo_mpi.h
bld::tool::fppflags::ppr_1d %FPPFLAGS
+bld::tool::fppflags::agrif %FPPFLAGS -include MAIN_DIR/ext/AGRIF/nemo_mpi.h
+bld::tool::fppflags::nemo %FPPFLAGS -ICONFIG_DIR/CUR_CONF/NEMOFILES/inc
# Ignore the following dependencies
bld::excl_dep inc::VT.inc
@@ -60,6 +59,7 @@ bld::excl_dep use::mod_oasis
bld::excl_dep use::mkl_dfti
bld::excl_dep use::cudafor
bld::excl_dep use::openacc
+
# Don't generate interface files
bld::tool::geninterface none
diff --git a/mk/conv.cfg b/mk/conv.cfg
index f8757962..b83cd1bb 100644
--- a/mk/conv.cfg
+++ b/mk/conv.cfg
@@ -7,18 +7,18 @@ cfg::version 1.0
# ------------------------------------------------------------------------------
# Build information
# ------------------------------------------------------------------------------
-inc $NEMO_TDIR/$NEW_CONF/BLD/$MYARCH
+inc NEMO_TDIR/CUR_CONF/BLD/arch_nemo.fcm
bld::tool::cc %CC
bld::tool::cflags %CFLAGS
bld::tool::make %MK
-src::convsrc $MAIN_DIR/ext/AGRIF/LIB
+src::convsrc MAIN_DIR/ext/AGRIF/LIB
#----------------------------------------------------------------------------
# Build options (code-specific, machine-independent)
# ----------------------------------------------------------------------------
-dir::root $NEMO_TDIR/$NEW_CONF/AGRIFLIB
+dir::root NEMO_TDIR/CUR_CONF/AGRIFLIB
#bld::tool::cflags::convsrc -O0
#bld::tool::ld::convsrc cc
diff --git a/sette/all_functions.sh b/sette/all_functions.sh
index 167263ef..cdfa8d9a 100755
--- a/sette/all_functions.sh
+++ b/sette/all_functions.sh
@@ -57,7 +57,7 @@
#
# REVISION_NUMBER(or DATE) : revision number by svn info, if problems with svn date is taken
#
-# TEST_NAME : set in sette.sh for each configuration to be tested (directory TEST_NAME is created under ${NEW_CONF} directory )
+# TEST_NAME : set in sette.sh for each configuration to be tested (directory TEST_NAME is created under ${config} directory )
#
# EXAMPLES
# ========
@@ -99,9 +99,6 @@ sync_config() {
echo '-------------------------------------------------------------------------------'
echo ' SOURCE AND CONFIG FILES SYNCHRONISATION '
- echo ''
- echo "configuration $lCFG/MY_SRC will be synchronised with $lREF/MY_SRC"
- echo ''
# synchronise MY_SRC if $lCFG directory exist
if [ -d $lREF/MY_SRC ] && [ -d $lCFG ] ; then
@@ -124,20 +121,31 @@ sync_config() {
fi
# synchronisation $lREF/MY_SRC directory (and delete file in target location if needed)
+ echo ''
+ echo "configuration $lCFG/MY_SRC will be synchronised with $lREF/MY_SRC"
+ echo ''
rsync -a --delete $lREF/MY_SRC/ $lCFG/MY_SRC
# rsync keep preserve the modification time stamp.
# To avoid case where a file in MY_SRC is replace by an older file, we touch the file
touch --no-create $lCFG/MY_SRC/*
+ else
+ echo ''
+ echo "configuration $lCFG/MY_SRC not synchronised with $lREF/MY_SRC"
+ echo ''
fi
- echo ''
- echo "configuration $lCFG/EXP00 will be synchronised with $lREF/EXPREF"
- echo "(links are skipped)"
- echo ''
# synchronize EXPREF
if [ -d $lREF/EXPREF ] && [ -d $lCFG/EXP00 ] ; then
- rsync -a --no-links $lREF/EXPREF/ $lCFG/EXP00/.
+ echo ''
+ echo "configuration $lCFG/EXP00 will be synchronised with $lREF/EXPREF"
+ echo "(links are skipped)"
+ echo ''
+ rsync -a --no-links $lREF/EXPREF/ $lCFG/EXP00/.
+ else
+ echo ''
+ echo "configuration $lCFG/EXP00 not synchronised with $lREF/EXPREF"
+ echo ''
fi
echo '-------------------------------------------------------------------------------'
fi
@@ -158,7 +166,6 @@ clean_config() {
echo ''
echo "$(basename $lCFG) configuration has been cleaned"
else
- echo ''
echo "$(basename $lCFG) configuration does not exist; we skip cleaning"
fi
echo ''
@@ -190,13 +197,11 @@ set_valid_dir () {
if [[ $localchanges > 0 ]] ; then
REVISION_NB=${REVISION_NB}+
fi
- # remove last _ST followed by zero or more alphanumeric characters
- NEW_CONF1=$( echo $NEW_CONF | sed -e 's/_ST\([0-9a-zA-Z]*\)$//' )
CMP_NAM_L=$(echo ${CMP_NAM} | tr '[:upper:]' '[:lower:]')
if [[ -n "${NEMO_DEBUG}" && ! ${CMP_NAM_L} =~ ("debug"|"dbg") ]]; then
- export NEMO_VALID=${NEMO_VALIDATION_DIR}/${CMP_NAM}_DEBUG/${REVISION_NB}/${NEW_CONF1}/${TEST_NAME}
+ export NEMO_VALID=${NEMO_VALIDATION_DIR}/${CMP_NAM}_DEBUG/${REVISION_NB}/${config}/${TEST_NAME}
else
- export NEMO_VALID=${NEMO_VALIDATION_DIR}/${CMP_NAM}/${REVISION_NB}/${NEW_CONF1}/${TEST_NAME}
+ export NEMO_VALID=${NEMO_VALIDATION_DIR}/${CMP_NAM}/${REVISION_NB}/${config}/${TEST_NAME}
fi
}
@@ -329,7 +334,7 @@ post_test_tidyup () {
# EXE_DIR
# CONFIG_DIR
# NEMO_VALIDATION_DIR
-# NEW_CONF
+# config
# CMP_NAM
# TEST_NAME
echo "SETTE directory is : ${SETTE_DIR}"
@@ -337,7 +342,7 @@ echo "INPUT directory is : ${INPUT_DIR}"
echo "EXECUTION directory is : ${EXE_DIR}"
echo "CONFIG directory is : ${CONFIG_DIR}"
echo "VALIDATION directory is : ${NEMO_VALID}"
-echo "NEW CONFIGURATION is : ${NEW_CONF}"
+echo "CONFIGURATION is : ${config}"
echo "COMPILER is : ${CMP_NAM}"
echo "TEST is : ${TEST_NAME}"
echo "TOOLS directory is : ${TOOLS_DIR}"
diff --git a/sette/prepare_exe_dir.sh b/sette/prepare_exe_dir.sh
index a1d93fb6..c823b11a 100755
--- a/sette/prepare_exe_dir.sh
+++ b/sette/prepare_exe_dir.sh
@@ -66,21 +66,21 @@ set -o posix
# PREPARE EXEC_DIR
#==================
-if [ -z "${CUSTOM_DIR}" ]; then
- EXE_DIR=${CONFIG_DIR}/${NEW_CONF}
-else
- CMP_NAM_L=$(echo ${CMP_NAM} | tr '[:upper:]' '[:lower:]')
- if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM_L} =~ ("debug"|"dbg") ]]; then
- export EXE_DIR=${CUSTOM_DIR}/${SETTE_SUB_VAL}_${NEMO_REV}_DEBUG/${NEW_CONF}
- else
- EXE_DIR=${CUSTOM_DIR}/${SETTE_SUB_VAL}_${NEMO_REV}/${NEW_CONF}
- fi
-fi
+#if [ -z "${CUSTOM_DIR}" ]; then
+# EXE_DIR=${CONFIG_DIR}/${SETTE_CONFIG}
+#else
+# CMP_NAM_L=$(echo ${CMP_NAM} | tr '[:upper:]' '[:lower:]')
+# if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM_L} =~ ("debug"|"dbg") ]]; then
+# export EXE_DIR=${CUSTOM_DIR}/${SETTE_SUB_VAL}_${NEMO_REV}_DEBUG/${SETTE_CONFIG}
+# else
+# EXE_DIR=${CUSTOM_DIR}/${SETTE_SUB_VAL}_${NEMO_REV}/${SETTE_CONFIG}
+# fi
+#fi
+EXE_DIR=${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
mkdir -p ${EXE_DIR}/${TEST_NAME}
-#cp -RL ${EXE_DIR:-${CONFIG_DIR}/${NEW_CONF}}/EXP00/* ${EXE_DIR}/${TEST_NAME}/.
-cp -an ${EXE_DIR:-${CONFIG_DIR}/${NEW_CONF}}/EXP00/* ${EXE_DIR}/${TEST_NAME}/.
-COMP_KEYS="`cat ${EXE_DIR}/cpp_${NEW_CONF}.fcm | sed -e 's/.*fppkeys *//'`"
+cp -an ${EXE_DIR}/EXP00/* ${EXE_DIR}/${TEST_NAME}/.
+COMP_KEYS="`cat ${EXE_DIR}/cpp_${SETTE_CONFIG}.fcm | sed -e 's/.*fppkeys *//'`"
export EXE_DIR=${EXE_DIR}/${TEST_NAME}
cd ${EXE_DIR}
diff --git a/sette/prepare_job.sh b/sette/prepare_job.sh
index 80d3fa1e..2c76c99d 100755
--- a/sette/prepare_job.sh
+++ b/sette/prepare_job.sh
@@ -101,10 +101,10 @@ NEMO_VALID=$7
#
echo "date: `date`" >> ${SETTE_DIR}/output.sette
echo "" >> ${SETTE_DIR}/output.sette
-echo "running config: ${NEW_CONF}" >> ${SETTE_DIR}/output.sette
+echo "running config: ${SETTE_CONFIG}" >> ${SETTE_DIR}/output.sette
echo "" >> ${SETTE_DIR}/output.sette
echo "list of cpp_keys: " >> ${SETTE_DIR}/output.sette
-echo "`more ${NEMO_TDIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm`" >> ${SETTE_DIR}/output.sette
+echo "`more ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}/cpp_${SETTE_CONFIG}.fcm`" >> ${SETTE_DIR}/output.sette
echo "" >> ${SETTE_DIR}/output.sette
echo "compiling with: ${CMP_NAM}" >> ${SETTE_DIR}/output.sette
echo "" >> ${SETTE_DIR}/output.sette
@@ -269,10 +269,10 @@ fi
-e"s/NXIOPROCS/${NXIO_PROC}/" \
-e"s:DEF_SETTE_DIR:${SETTE_DIR}:" -e"s:DEF_INPUT_DIR:${INPUT_DIR}:" \
-e"s:DEF_EXE_DIR:${EXE_DIR}:" \
- -e"s:DEF_CONFIG_DIR:${NEMO_TDIR}:" \
+ -e"s:DEF_CONFIG_DIR:${CMP_DIR:-${CONFIG_DIR0}}:" \
-e"s:DEF_TOOLS_DIR:${TOOLS_DIR}:" \
-e"s:MPI_FLAG:${MPI_FLAG}:" \
- -e"s:DEF_NEMO_VALIDATION:${NEMO_VALID}:" -e"s:DEF_NEW_CONF:${NEW_CONF}:" \
+ -e"s:DEF_NEMO_VALIDATION:${NEMO_VALID}:" -e"s:DEF_NEW_CONF:${SETTE_CONFIG}:" \
-e"s:DEF_CMP_NAM:${CMP_NAM}:" -e"s:DEF_TEST_NAME:${TEST_NAME}:" > run_sette_test.job
case ${COMPILER} in
diff --git a/sette/sette.sh b/sette/sette.sh
index 96182e16..5dcf8f26 100755
--- a/sette/sette.sh
+++ b/sette/sette.sh
@@ -1,5 +1,6 @@
#!/bin/sh
#set -x
+
# initialise user dependent variable
export cmd=$0 ; export cmdargs=$@
SETTE_DIR=$(cd $(dirname "$0"); pwd)
@@ -82,8 +83,6 @@ if [ $# -gt 0 ]; then
echo "-s: MY_SRC and EXP00 in ${SETTE_TEST_CONFIGS[@]} will be synchronised with the MY_SRC and EXPREF from the reference configuration"
echo "";;
n) OPTSTR="$OPTARG"
- OPTSTR="${OPTSTR/ORCA2_SAS_ICE/SAS}" # Permit either shortened (expected) or full name for SAS
- OPTSTR="${OPTSTR/AGRIF_DEMO/AGRIF}" # Permit either shortened (expected) or full name for AGRIF
export SETTE_TEST_CONFIGS=(${OPTSTR})
echo "=================================="
if [ ${#SETTE_TEST_CONFIGS[@]} -gt 1 ]; then
@@ -216,8 +215,6 @@ if [ ! -d $NEMO_VALIDATION_DIR/$SETTE_SUB_VAL ] && [ ${dry_run} -eq 0 ] ; then
fi
export NEMO_VALIDATION_DIR=$NEMO_VALIDATION_DIR/$SETTE_SUB_VAL
-TEST_CONFIGS="${TEST_CONFIGS/ORCA2_SAS_ICE/SAS}" # Shortening of 'ORCA2_SAS_ICE' to 'SAS'
-TEST_CONFIGS="${TEST_CONFIGS/AGRIF_DEMO/AGRIF}" # Shortening of 'AGRIF_DEMO' to 'AGRIF'
if [ ${#SETTE_TEST_CONFIGS[@]} -eq 0 ]; then
echo "=================================="
echo "Configurations $TEST_CONFIGS will be tested if they are available"
@@ -287,7 +284,7 @@ while [[ $NRUN -ne 0 && $nit -le 1080 ]]; do
printf "%-3d %s\r" $NRUN 'nemo_sette runs still in queue or running ...';
else
printf "%-50s\n" " "
- . ./sette_rpt.sh ${NEMO_DEBUG}
+ ./sette_rpt.sh ${NEMO_DEBUG} ${SETTE_SUB_VAL:+-v ${SETTE_SUB_VAL}}
exit
fi
sleep 10
diff --git a/sette/sette_eval.sh b/sette/sette_eval.sh
index 58263277..44c0a57c 100755
--- a/sette/sette_eval.sh
+++ b/sette/sette_eval.sh
@@ -156,8 +156,6 @@ function runcmpres(){
quiet=0
. ./param.cfg
TEST_CONFIGS_AVAILABLE=${TEST_CONFIGS_AVAILABLE[@]:-${TEST_CONFIGS[@]}} # workaround for some dated param.cfgs files
- TEST_CONFIGS_AVAILABLE=${TEST_CONFIGS_AVAILABLE[@]/ SAS / ORCA2_SAS_ICE } # workaround for some dated param.cfgs files
- TEST_CONFIGS_AVAILABLE=${TEST_CONFIGS_AVAILABLE[@]/ AGRIF / AGRIF_DEMO } # workaround for some dated param.cfgs files
USER_INPUT='yes' # Default: yes => request user input on decisions.
mach=${COMPILER}
diff --git a/sette/sette_list_avail_cfg.sh b/sette/sette_list_avail_cfg.sh
index 1f0878d3..08fcdd3a 100755
--- a/sette/sette_list_avail_cfg.sh
+++ b/sette/sette_list_avail_cfg.sh
@@ -5,9 +5,9 @@ printf "%-15s \n" GYRE_PISCES
printf "%-15s \n" ORCA2_ICE_PISCES
printf "%-15s \n" ORCA2_OFF_PISCES
printf "%-15s \n" AMM12
-printf "%-15s \n" SAS
+printf "%-15s \n" ORCA2_SAS_ICE
printf "%-15s \n" ORCA2_ICE_OBS
-printf "%-15s \n" AGRIF
+printf "%-15s \n" AGRIF_DEMO
printf "%-15s \n" WED025
echo ''
echo 'Test cases available are named :'
diff --git a/sette/sette_reference-configurations.sh b/sette/sette_reference-configurations.sh
index f5ea3374..4c3d1527 100755
--- a/sette/sette_reference-configurations.sh
+++ b/sette/sette_reference-configurations.sh
@@ -130,10 +130,10 @@ cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template || exit
# ORCA2_ICE_PISCES :
# ORCA2_OFF_PISCES :
# AMM12 :
-# SAS : aka ORCA2_SAS_ICE
+# ORCA2_SAS_ICE :
# ORCA2_ICE_OBS :
-# AGRIF : AGRIF_DEMO: test AGRIF in a double zoom configuration in the nordic seas + 1 zoom in the eq. Pacific and
-# AGRIF_DEMO_NOAGRIF: check that key_agrif without zoom = no key_agrif
+# AGRIF_DEMO : test AGRIF in a double zoom configuration in the nordic seas + 1 zoom in the eq. Pacific and
+# AGRIF_DEMO_NOAGRIF: check that key_agrif without zoom = no key_agrif
# WED025 : regional configuration including sea-ice and tides (Spitzbergen)
. ./all_functions.sh
@@ -159,7 +159,7 @@ if [ ${config} == "GYRE_PISCES" ] ; then
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
# GYRE uses linssh so remove key_qco if added by default
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r GYRE_PISCES ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r GYRE_PISCES ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "GYRE_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for GYRE_PISCES
@@ -305,7 +305,7 @@ if [ ${config} == "ORCA2_ICE_PISCES" ] ; then
clean_config ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_ICE_PISCES ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_ICE_PISCES ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "ORCA2_ICE_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for ORCA2_ICE_PISCES
@@ -593,7 +593,7 @@ if [ ${config} == "ORCA2_OFF_PISCES" ] ; then
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
# ORCA2_OFF_PISCES uses linssh so remove key_qco if added by default
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_OFF_PISCES ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_OFF_PISCES ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "ORCA2_OFF_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for ORCA2_OFF_PISCES
@@ -769,7 +769,7 @@ if [ ${config} == "AMM12" ] ; then
clean_config ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AMM12 ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AMM12 ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "AMM12" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for AMM12
@@ -888,7 +888,7 @@ fi
# ---------
# ORCA2_SAS_ICE
# ---------
-if [ ${config} == "SAS" ] ; then
+if [ ${config} == "ORCA2_SAS_ICE" ] ; then
SETTE_CONFIG="ORCA2_SAS_ICE"${SETTE_STG}
if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM_L} =~ ("debug"|"dbg") ]]
then
@@ -904,9 +904,9 @@ if [ ${config} == "SAS" ] ; then
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
# ORCA2_SAS_ICE uses linssh so remove key_qco if added by default
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_SAS_ICE ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_SAS_ICE ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
fi
-if [ ${config} == "SAS" ] && [ ${DO_RESTART} == "1" ] ; then
+if [ ${config} == "ORCA2_SAS_ICE" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests
export TEST_NAME="LONG"
cd ${SETTE_DIR}
@@ -969,7 +969,7 @@ if [ ${config} == "SAS" ] && [ ${DO_RESTART} == "1" ] ; then
fi
-if [ ${config} == "SAS" ] && [ ${DO_REPRO} == "1" ] ; then
+if [ ${config} == "ORCA2_SAS_ICE" ] && [ ${DO_REPRO} == "1" ] ; then
## Reproducibility tests
if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM_L} =~ ("debug"|"dbg") ]]
then
@@ -1051,7 +1051,7 @@ if [ ${config} == "ORCA2_ICE_OBS" ] ; then
clean_config ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_ICE_PISCES -d "OCE ICE" ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "key_asminc ${ADD_KEYS}" del_key "key_top ${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_ICE_PISCES -d "OCE ICE" ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "key_asminc ${ADD_KEYS}" del_key "key_top ${DEL_KEYS}"
fi
if [ ${config} == "ORCA2_ICE_OBS" ] && [ ${DO_RESTART} == "1" ] ; then
## Reproducibility tests
@@ -1155,9 +1155,9 @@ if [ ${config} == "ORCA2_ICE_OBS" ] && [ ${DO_RESTART} == "1" ] ; then
fi
# ------------
-# AGRIF ICE
+# AGRIF_DEMO
# -----------
-if [ ${config} == "AGRIF" ] ; then
+if [ ${config} == "AGRIF_DEMO" ] ; then
SETTE_CONFIG="AGRIF_DEMO"${SETTE_STG}
if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM_L} =~ ("debug"|"dbg") ]]
then
@@ -1175,9 +1175,9 @@ if [ ${config} == "AGRIF" ] ; then
clean_config ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AGRIF_DEMO ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AGRIF_DEMO ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
fi
-if [ ${config} == "AGRIF" ] && [ ${DO_RESTART} == "1" ] ; then
+if [ ${config} == "AGRIF_DEMO" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests
export TEST_NAME="LONG"
cd ${SETTE_DIR}
@@ -1325,7 +1325,7 @@ if [ ${config} == "AGRIF" ] && [ ${DO_RESTART} == "1" ] ; then
fi
-if [ ${config} == "AGRIF" ] && [ ${DO_REPRO} == "1" ] ; then
+if [ ${config} == "AGRIF_DEMO" ] && [ ${DO_REPRO} == "1" ] ; then
## Reproducibility tests
export TEST_NAME="REPRO_2_8"
cd ${MAIN_DIR}
@@ -1438,7 +1438,7 @@ if [ ${config} == "AGRIF" ] && [ ${DO_REPRO} == "1" ] ; then
fi
-if [ ${config} == "AGRIF" ] && [ ${DO_CORRUPT} == "1" ] ; then
+if [ ${config} == "AGRIF_DEMO" ] && [ ${DO_CORRUPT} == "1" ] ; then
## test code corruption with AGRIF (phase 1) ==> Compile with key_agrif but run with no zoom
if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM_L} =~ ("debug"|"dbg") ]]
then
@@ -1481,7 +1481,7 @@ fi
## test code corruption with AGRIF (phase 2) ==> Compile without key_agrif (to be compared with AGRIF_DEMO_ST/ORCA2)
-if [ ${config} == "AGRIF" ] && [ ${DO_CORRUPT} == "1" ] ; then
+if [ ${config} == "AGRIF_DEMO" ] && [ ${DO_CORRUPT} == "1" ] ; then
SETTE_CONFIG="AGRIF_DEMO_NOAGRIF"${SETTE_STG}
export TEST_NAME="ORCA2"
cd ${MAIN_DIR}
@@ -1490,7 +1490,7 @@ if [ ${config} == "AGRIF" ] && [ ${DO_CORRUPT} == "1" ] ; then
clean_config ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AGRIF_DEMO ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "key_agrif ${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AGRIF_DEMO ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "key_agrif ${DEL_KEYS}"
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
@@ -1538,7 +1538,7 @@ if [ ${config} == "WED025" ] ; then
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
# WED025 uses ln_hpg_isf so remove key_qco if added by default
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r WED025 ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r WED025 ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "WED025" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests
diff --git a/sette/sette_rpt.sh b/sette/sette_rpt.sh
index 4baa2e9c..3740c091 100755
--- a/sette/sette_rpt.sh
+++ b/sette/sette_rpt.sh
@@ -8,7 +8,6 @@
#########################################################################################
######################### Start of function definitions #################################
##
-
function get_dorv() {
if [ $lastchange == 'old' ] ; then
dorv=`ls -1rt $vdir/$mach/ | tail -1l `
@@ -475,8 +474,6 @@ function identictest(){
MAIN_DIR=$(dirname $SETTE_DIR)
. ./param.cfg
TEST_CONFIGS_AVAILABLE=${TEST_CONFIGS_AVAILABLE[@]:-${TEST_CONFIGS[@]}} # Workaround for some dated param.cfgs files
- TEST_CONFIGS_AVAILABLE=${TEST_CONFIGS_AVAILABLE[@]/SAS /ORCA2_SAS_ICE } # Workaround for some dated param.cfgs files
- TEST_CONFIGS_AVAILABLE=${TEST_CONFIGS_AVAILABLE[@]/AGRIF /AGRIF_DEMO } # Workaround for some dated param.cfgs files
if [ -z $USER_INPUT ] ; then USER_INPUT='yes' ; fi # Default: yes => request user input on decisions.
# (but may br inherited/imported from sette.sh)
diff --git a/sette/sette_test-cases.sh b/sette/sette_test-cases.sh
index e1649645..d15a095c 100755
--- a/sette/sette_test-cases.sh
+++ b/sette/sette_test-cases.sh
@@ -158,7 +158,7 @@ if [ ${config} == "OVERFLOW" ] ; then
clean_config ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a OVERFLOW ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a OVERFLOW ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "OVERFLOW" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for OVERFLOW
@@ -274,7 +274,7 @@ if [ ${config} == "LOCK_EXCHANGE" ] ; then
clean_config ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a LOCK_EXCHANGE ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a LOCK_EXCHANGE ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "LOCK_EXCHANGE" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for LOCK_EXCHANGE
@@ -393,7 +393,7 @@ if [ ${config} == "VORTEX" ] ; then
clean_config ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a VORTEX ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a VORTEX ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "VORTEX" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for VORTEX
@@ -587,7 +587,7 @@ if [ ${config} == "ICE_AGRIF" ] ; then
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
# ICE_AGRIF uses linssh so remove key_qco if added by default
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a ICE_AGRIF ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a ICE_AGRIF ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "ICE_AGRIF" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for ICE_AGRIF
@@ -784,7 +784,7 @@ if [ ${config} == "ISOMIP+" ] ; then
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
# ISOMIP+ uses ln_hpg_isf so remove key_qco if added by default
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a ISOMIP+ ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a ISOMIP+ ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "ISOMIP+" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests
@@ -927,7 +927,7 @@ if [ ${config} == "SWG" ] && [ ${USING_QCO} == "yes" ] ; then
clean_config ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
sync_config ${CONFIG_DIR0}/${config} ${CMP_DIR:-${CONFIG_DIR0}}/${SETTE_CONFIG}
#
- . ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a SWG ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
+ ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -a SWG ${CUSTOM_DIR:+-t ${CMP_DIR}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "SWG" ] && [ ${DO_RESTART} == "1" ] && [ ${USING_QCO} == "yes" ] ; then
## Restartability tests for SWG
diff --git a/tools/maketools b/tools/maketools
index cc420971..33ed7352 100755
--- a/tools/maketools
+++ b/tools/maketools
@@ -1,6 +1,6 @@
#!/bin/bash
-#set -x
set -o posix
+#set -x
#set -u
#set -e
#+
@@ -35,7 +35,7 @@ set -o posix
#
# From user input
#
-# - NEW_CONF : configuration to be created
+# - CUR_CONF : configuration to be created
# - CMP_NAM : compiler name
# - NBR_PRC : number of processes used to compile
#
@@ -57,8 +57,6 @@ set -o posix
# TODO
# ====
#
-# option debug
-#
#
# EVOLUTIONS
# ==========
@@ -73,23 +71,24 @@ set -o posix
#- Local variables ---
b_n=$(basename ${0})
-export TOOLS_DIR=$(cd $(dirname "$0"); pwd)
-export MAIN_DIR=${TOOLS_DIR%/tools}
-export COMPIL_DIR=${MAIN_DIR}/mk
-export NEMO_DIR=${MAIN_DIR}/NEMO
+TOOLS_DIR=$(cd $(dirname "$0"); pwd)
+MAIN_DIR=${TOOLS_DIR%/tools}
+COMPIL_DIR=${MAIN_DIR}/mk
+NEMO_DIR=${MAIN_DIR}/NEMO
#-
#- FCM and functions location ---
-export PATH=${MAIN_DIR}/ext/FCM/bin:$PATH
+PATH=${MAIN_DIR}/ext/FCM/bin:$PATH
#-
#- Choice of the options ---
x_h="";
x_n="";
x_m="";
+x_b="";
x_t="";
x_c="";
x_j=1;
-while getopts :hm:n:r:j:t: V
+while getopts :hbm:n:r:j:t: V
do
case $V in
(h) x_h=${OPTARG};
@@ -99,6 +98,7 @@ while getopts :hm:n:r:j:t: V
echo " -h institute : specific help for consortium members";
echo " -n name : tool name, [-n help] to list existing tools";
echo " -m arch : choose compiler, [-m help] to list exiting compilers";
+ echo " -b : compile with debug options";
echo " -j No : number of processes used to compile (0=nocompilation)";
echo " -t dir : remporary directory for compilation"
echo "";
@@ -113,6 +113,7 @@ while getopts :hm:n:r:j:t: V
exit 0;;
(n) x_n=${OPTARG};;
(m) x_m=${OPTARG};;
+ (b) x_b=1;;
(j) x_j=${OPTARG};;
(t) x_t=${OPTARG};;
(:) echo ${b_n}" : -"${OPTARG}" option : missing value" 1>&2;
@@ -128,80 +129,72 @@ shift $(($OPTIND-1));
[[ "${#@}" -ne 0 && "${@}" != clean ]] && echo "Invalid option "$@" " && exit
[ "${#@}" -ne 0 ] && x_c="--$@"
-#-
-#- Go to NEMOGCM/tools directory ---
-cd ${TOOLS_DIR}
-
#-
#- Initialisation from input ---
-export NEW_CONF=${x_n}
+CUR_CONF=${x_n}
NBR_PRC=${x_j}
CMP_NAM=${x_m}
-NEMO_TDIR=${x_t:-$NEMO_TDIR}
-export NEMO_TDIR=${NEMO_TDIR:-$TOOLS_DIR}
+NEMO_TDIR=${x_t:-$TOOLS_DIR}
#- Check if the tool or the compiler exist or list it
-[ "${NEW_CONF}" == help ] && printf "%s\n" "Available tools :" `ls ${TOOLS_DIR}|grep -v COMPILE | grep -v maketools` && exit
-[ "${CMP_NAM}" == help ] && . ${COMPIL_DIR}/Flist_archfile.sh all && exit
+[ "${CUR_CONF}" == help ] && printf "%s\n" "Available tools :" `ls ${TOOLS_DIR}|grep -v COMPILE | grep -v maketools` && exit
+[ "${CMP_NAM}" == help ] && ${COMPIL_DIR}/Flist_archfile.sh ${MAIN_DIR} && exit 0
#- Choose a default tool if needed ---
#- REBUILD or last one used ---
-. ${COMPIL_DIR}/Fcheck_config.sh ${TOOLS_DIR}/tools.txt ${NEW_CONF} || exit
+${COMPIL_DIR}/Fcheck_config.sh ${TOOLS_DIR}/tools.txt ${CUR_CONF} || exit
#- Save new configuration ---
-echo "${NEW_CONF} " > ${TOOLS_DIR}/tools.txt
+echo "${CUR_CONF} " > ${TOOLS_DIR}/tools.txt
#- Make the building directory
-. ${COMPIL_DIR}/Fmake_tools_bld.sh ${TOOLS_DIR} ${NEW_CONF} ${NEMO_TDIR} || exit
+${COMPIL_DIR}/Fmake_tools_bld.sh ${TOOLS_DIR} ${CUR_CONF} ${NEMO_TDIR} || exit
#- At this stage cpp keys have been updated. we can check the arch file
#- When used for the first time, choose a compiler ---
-. ${COMPIL_DIR}/Fcheck_archfile.sh ${TOOLS_DIR}/${NEW_CONF}/BLD/arch_tools.fcm ${TOOLS_DIR}/${NEW_CONF}/BLD/cpp_tools.fcm ${CMP_NAM} || exit
+${COMPIL_DIR}/Fcheck_archfile.sh ${TOOLS_DIR}/${CUR_CONF}/BLD/arch_tools.fcm ${TOOLS_DIR}/${CUR_CONF}/BLD/cpp_tools.fcm ${MAIN_DIR}/arch/arch-${CMP_NAM}.fcm ${x_b} || exit
#- At this stage the configuration has beeen chosen
#- We coose the default light file
-export USEBLD=bldxag_tools.cfg
+USEBLD=bldxag_tools.cfg
-#- We look after agrif
-grep key_agrif ${TOOLS_DIR}/${NEW_CONF}/BLD/cpp_tools.fcm && export AGRIFUSE=1 && export USEBLD=${USEBLD/xag/}
+#_ END OF CONFIGURATION PHASE
-. ${COMPIL_DIR}/Fprep_agrif.sh ${NEW_CONF} ${TOOLS_DIR} arch_tools.fcm|| exit 3
-#-
-#_ END OF CONFIGURATION PHASE
-#_
-
-#-
#- Compile ---
if [ "${NBR_PRC}" -gt 0 ]; then
-cd ${TOOLS_DIR}/${NEW_CONF} || cd -
## if AGRIF we do a first preprocessing
- if [[ ${#x_c} -eq 0 && "$AGRIFUSE" -eq 1 ]]; then
- fcm build --ignore-lock -j 1 ${COMPIL_DIR}/bld_preproagr_tools.cfg ||{ cd - ; exit 1 ;}
- echo ''
+ grep key_agrif ${TOOLS_DIR}/${CUR_CONF}/BLD/cpp_tools.fcm && USEBLD=${USEBLD/xag/}
+ if [[ ${#x_c} -eq 0 && ! ${USEBLD} =~ "xag" ]]; then
+ ${COMPIL_DIR}/Fprep_agrif.sh ${MAIN_DIR} ${TOOLS_DIR}/${CUR_CONF} || exit 3
+
+ # compile & copy conv
+ sed -e "s~MAIN_DIR~${MAIN_DIR}~; s~NEMO_TDIR~${NEMO_TDIR}~; s~CUR_CONF~${CUR_CONF}~; s~COMPIL_DIR~${COMPIL_DIR}~" ${COMPIL_DIR}/conv.cfg > ${NEMO_TDIR}/${CUR_CONF}/BLD/conv.cfg
+ fcm build ${NEMO_TDIR}/${CUR_CONF}/BLD/conv.cfg || exit 1
+ cp -fa ${MAIN_DIR}/ext/AGRIF/agrif_oce.in $2/$1/AGRIFLIB/bin/conv ${NEMO_TDIR}/${CUR_CONF}/NEMOFILES/.
+
+ sed -e "s~MAIN_DIR~${MAIN_DIR}~; s~TOOLS_DIR~${TOOLS_DIR}~; s~CUR_CONF~${CUR_CONF}~; s~COMPIL_DIR~${COMPIL_DIR}~" ${COMPIL_DIR}/bld_preproagr_tools.cfg > ${NEMO_TDIR}/${CUR_CONF}/BLD/bld_preproagr_tools.cfg
+ fcm build --ignore-lock -j 1 ${NEMO_TDIR}/${CUR_CONF}/BLD/bld_preproagr_tools.cfg || exit 1
+ echo
echo "---------------------------------"
echo "CONV preprocessing successfull !!"
echo "---------------------------------"
- echo ''
+ echo
fi
- fcm build ${x_c} --ignore-lock -v 1 -j ${NBR_PRC} ${COMPIL_DIR}/${USEBLD} || cd -
- if [ -n "$(ls ${NEMO_TDIR}/${NEW_CONF}/BLD/bin/*.exe)" ]; then
- for i in `ls ${NEMO_TDIR}/${NEW_CONF}/BLD/bin/*.exe`
+ sed -e "s~MAIN_DIR~${MAIN_DIR}~; s~TOOLS_DIR~${TOOLS_DIR}~; s~CUR_CONF~${CUR_CONF}~; s~COMPIL_DIR~${COMPIL_DIR}~" ${COMPIL_DIR}/${USEBLD} > ${NEMO_TDIR}/${CUR_CONF}/BLD/${USEBLD}
+ fcm build ${x_c} --ignore-lock -v 1 -j ${NBR_PRC} ${NEMO_TDIR}/${CUR_CONF}/BLD/${USEBLD}
+
+ if ls ${NEMO_TDIR}/${CUR_CONF}/BLD/bin/*.exe 2>/dev/null && [ -z "${x_c}" ]; then
+ for i in ${NEMO_TDIR}/${CUR_CONF}/BLD/bin/*.exe
do
- ln -sf ${i} ${TOOLS_DIR}/${NEW_CONF}/.
+ ln -sfv ${i} ${TOOLS_DIR}/${CUR_CONF}/.
done
fi
fi
-#-
-#- Come back to original directory ---
-cd -
-#-
-#- Unset variables
-${COMPIL_DIR}/Fclean_var.sh
-exit 0;
+exit 0
--
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