diff --git a/doc/latex/NEMO/subfiles/chap_DOM.tex b/doc/latex/NEMO/subfiles/chap_DOM.tex index 4683e57a862198a064f18f721d06e30230c4b95a..18e850ea453ff249d4cb2315b05f01ee88ce6af4 100644 --- a/doc/latex/NEMO/subfiles/chap_DOM.tex +++ b/doc/latex/NEMO/subfiles/chap_DOM.tex @@ -392,16 +392,16 @@ The explicit specification of a range of mesh-related fields are required for the definition of a configuration. These include: -\begin{clines} +\begin{forlines} integer Ni0glo, NjOglo, jpkglo /* global domain sizes (without MPI halos) */ -logical l\_Iperio, l\_Jperio /* lateral global domain b.c.: i- j-periodicity */ -logical l\_NFold /* lateral global domain b.c.: North Pole folding */ -char(1) c\_NFtype /* type of North pole Folding: T or F point */ +logical l_Iperio, l_Jperio /* lateral global domain b.c.: i- j-periodicity */ +logical l_NFold /* lateral global domain b.c.: North Pole folding */ +char(1) c_NFtype /* type of North pole Folding: T or F point */ real glamt, glamu, glamv, glamf /* geographic longitude (t,u,v and f points respectively) */ real gphit, gphiu, gphiv, gphif /* geographic latitude */ real e1t, e1u, e1v, e1f /* horizontal scale factors */ real e2t, e2u, e2v, e2f /* horizontal scale factors */ -\end{clines} +\end{forlines} The values of the geographic longitude and latitude arrays at indices $i,j$ correspond to the analytical expressions of the longitude $\lambda$ and latitude $\varphi$ as a function of $(i,j)$, @@ -413,12 +413,12 @@ evaluated for the same arguments as $\lambda$ and $\varphi$. %% ================================================================================================= \subsubsection{Optional fields} -\begin{clines} +\begin{forlines} /* Optional: */ int ORCA, ORCA_index /* configuration name, configuration resolution */ double e1e2u, e1e2v /* U and V surfaces (if grid size reduction in some straits) */ double ff_f, ff_t /* Coriolis parameter (if not on the sphere) */ -\end{clines} +\end{forlines} \NEMO\ can support the local reduction of key strait widths by altering individual values of e2u or e1v at the appropriate locations. @@ -560,7 +560,7 @@ The explicit specification of a range of fields related to the vertical grid are the definition of a configuration. These include: -\begin{clines} +\begin{forlines} int ln_zco, ln_zps, ln_sco /* flags for z-coord, z-coord with partial steps and s-coord */ int ln_isfcav /* flag for ice shelf cavities */ double e3t_1d, e3w_1d /* reference vertical scale factors at T and W points */ @@ -569,7 +569,7 @@ double e3uw_0, e3vw_0 /* vertical scale factors 3D coordinate int bottom_level, top_level /* last wet T-points, 1st wet T-points (for ice shelf cavities) */ /* For reference: */ float bathy_metry /* bathymetry used in setting top and bottom levels */ -\end{clines} +\end{forlines} This set of vertical metrics is sufficient to describe the initial depth and thickness of every gridcell in the model regardless of the choice of vertical coordinate. @@ -639,11 +639,11 @@ it should be noted here that a successful use of these options requires appropriate mask fields to be present in the domain configuration file. Among the possibilities are: -\begin{clines} +\begin{forlines} int closea_mask /* non-zero values in closed sea areas for optional masking */ int closea_mask_rnf /* non-zero values in closed sea areas with runoff locations (precip only) */ int closea_mask_emp /* non-zero values in closed sea areas with runoff locations (total emp) */ -\end{clines} +\end{forlines} %% ================================================================================================= \subsection{Output grid files} diff --git a/doc/latex/NEMO/subfiles/chap_DYN.tex b/doc/latex/NEMO/subfiles/chap_DYN.tex index d827a6c599832fa14d17a4501fb1d7cd65b66105..4d82795d35696d861d5db0c0091e496c68d53c39 100644 --- a/doc/latex/NEMO/subfiles/chap_DYN.tex +++ b/doc/latex/NEMO/subfiles/chap_DYN.tex @@ -916,9 +916,9 @@ As far as tracer conservation is concerned, barotropic velocities used to advect tracers must also be updated at \textit{now} time step. This implies to change the traditional order of computations in \NEMO: most of momentum trends (including the barotropic mode calculation) updated first, tracers' after. -This \textit{de facto} makes semi-implicit hydrostatic pressure gradient -(see section \autoref{subsec:DYN_hpg_imp}) -and time splitting not compatible. +%%This \textit{de facto} makes semi-implicit hydrostatic pressure gradient +%%(see section \autoref{subsec:DYN_hpg_imp}) +%%and time splitting not compatible. Advective barotropic velocities are obtained by using a secondary set of filtering weights, uniquely defined from the filter coefficients used for the time averaging (\citet{shchepetkin.mcwilliams_OM05}). Consistency between the time averaged continuity equation and the time stepping of tracers is here the key to