cfgs/SHARED/field_def_nemo-ice.xml

@@ -50,10 +50,11 @@
       <field id="icevpnd"      long_name="melt pond volume"                                        standard_name="sea_ice_meltpond_volume"                   unit="m" />
       <field id="icehlid"      long_name="melt pond lid depth"                                     standard_name="sea_ice_meltpondlid_depth"                 unit="m" />
       <field id="icevlid"      long_name="melt pond lid volume"                                    standard_name="sea_ice_meltpondlid_volume"                unit="m" />
-      <field id="dvpn_mlt"     long_name="pond volume tendency due to surface melt"                standard_name="sea_ice_pondvolume_tendency_melt"          unit="kg/m2/s" />
-      <field id="dvpn_lid"     long_name="pond volume tendency due to exchanges with lid"          standard_name="sea_ice_pondvolume_tendency_lids"          unit="kg/m2/s" />
-      <field id="dvpn_rnf"     long_name="pond volume tendency due to runoff"                      standard_name="sea_ice_pondvolume_tendency_runoff"        unit="kg/m2/s" />
-      <field id="dvpn_drn"     long_name="pond volume tendency due to drainage"                    standard_name="sea_ice_pondvolume_tendency_drainage"      unit="kg/m2/s" />
+      <field id="iceepnd"      long_name="melt pond effective concentration"                       standard_name="sea_ice_meltpond_effective_concentration"  unit=""  />
+      <field id="dvpn_mlt"     long_name="pond volume tendency due to surface melt"                standard_name="sea_ice_pondvolume_tendency_melt"          unit="cm/d" />
+      <field id="dvpn_lid"     long_name="pond volume tendency due to exchanges with lid"          standard_name="sea_ice_pondvolume_tendency_lids"          unit="cm/d" />
+      <field id="dvpn_rnf"     long_name="pond volume tendency due to runoff"                      standard_name="sea_ice_pondvolume_tendency_runoff"        unit="cm/d" />
+      <field id="dvpn_drn"     long_name="pond volume tendency due to drainage"                    standard_name="sea_ice_pondvolume_tendency_drainage"      unit="cm/d" />
 
       <!-- heat -->
       <field id="icetemp"      long_name="Mean ice temperature"                                                                                              unit="degC" detect_missing_value="true" />
@@ -95,6 +96,10 @@
       <field id="yield12"      long_name="yield surface tensor component 12"                       standard_name="yield12"                                   unit="N/m"  />
       <field id="beta_evp"     long_name="Relaxation parameter of ice rheology (beta)"             standard_name="relaxation_parameter_of_ice_rheology"      unit=""  />
 
+      <field id="isig1"        long_name="1st principal stress component for EVP rhg"                                                                        unit=""     />
+      <field id="isig2"        long_name="2nd principal stress component for EVP rhg"                                                                        unit=""     />
+      <field id="isig3"        long_name="convergence measure for EVP rheology (must be around 1)"                                                           unit=""     />
+
       <!-- surface heat fluxes -->
       <field id="qt_ice"       long_name="total heat flux at ice surface"                          standard_name="surface_downward_heat_flux_in_air"         unit="W/m2" />
       <field id="qsr_ice"      long_name="solar heat flux at ice surface"                          standard_name="surface_downwelling_shortwave_flux_in_air" unit="W/m2" />
@@ -189,8 +194,15 @@
       <field id="icedrift_heat" long_name="Ice heat drift (conservation check)"   unit="W/m2"    />
 
       <!-- sbcssm variables -->
-      <field id="sst_m"    unit="degC" />
-      <field id="sss_m"    unit="psu"  />
+      <field id="sst_m_pot"    unit="degC" />
+      
+      <!-- EOS-80 -->
+      <field id="sss_m_pra"    unit="psu"  />
+      <!-- TEOS-10 -->
+      <field id="sss_m_abs"    unit="g/kg"  />
+      <!-- SEOS -->
+      <field id="sss_m_seos"   unit="psu"  />
+      
       <field id="ssu_m"    unit="m/s"  />
       <field id="ssv_m"    unit="m/s"  />
       <field id="ssh_m"    unit="m"    />
@@ -407,9 +419,17 @@
       <field field_ref="iceapnd"          name="siapnd" />
       <field field_ref="icehpnd"          name="sihpnd" />
       <field field_ref="icevpnd"          name="sivpnd" />
+      <field field_ref="iceepnd"          name="siepnd" />
       <field field_ref="iceage"           name="siage"  />
-      <field field_ref="sst_m"            name="sst_m"  />
-      <field field_ref="sss_m"            name="sss_m"  />
+      
+      <field id="sst_m_pot"    unit="degC" />
+      
+      <!-- EOS-80 -->
+      <field id="sss_m_pra"    unit="psu"  />
+      <!-- TEOS-10 -->
+      <field id="sss_m_abs"    unit="g/kg"  />
+      <!-- SEOS -->
+      <field id="sss_m_seos"   unit="psu"  />
 
       <!-- heat -->
       <field field_ref="icetemp"          name="sitemp" />
@@ -435,7 +455,7 @@
       <field field_ref="sheastr"          name="sheastr" />
       <field field_ref="sig1_pnorm"       name="sig1_pnorm"/>
       <field field_ref="sig2_pnorm"       name="sig2_pnorm"/>
-      <field field_ref="icedlt"           name="sidelt" />
+      <field field_ref="icedlt"           name="sidelta" />
 
       <!-- heat fluxes -->
       <field field_ref="qt_oce_ai"        name="qt_oce_ai"  />

cfgs/SHARED/field_def_nemo-pisces.xml

@@ -183,6 +183,9 @@
     <field id="PPNEWN"      long_name="New Primary production of nanophyto"     unit="molC/m3/s"  grid_ref="grid_T_3D" />
     <field id="PPNEWP"      long_name="New Primary production of picophyto"     unit="molC/m3/s"  grid_ref="grid_T_3D" />
     <field id="PPNEWD"      long_name="New Primary production of diatoms"       unit="molC/m3/s"  grid_ref="grid_T_3D" />
+    <field id="GPPHYN"      long_name="Gross Primary production of nanophyto"   unit="molC/m3/s"  grid_ref="grid_T_3D" />
+    <field id="GPPHYP"      long_name="Gross Primary production of picophyto"   unit="molC/m3/s"  grid_ref="grid_T_3D" />
+    <field id="GPPHYD"      long_name="Gross Primary production of diatoms"     unit="molC/m3/s"  grid_ref="grid_T_3D" />
     <field id="PBSi"        long_name="Primary production of Si diatoms"        unit="molC/m3/s"  grid_ref="grid_T_3D" />
     <field id="PFeN"        long_name="Primary production of nano iron"         unit="molC/m3/s"  grid_ref="grid_T_3D" />
     <field id="PFeP"        long_name="Primary production of pico iron"         unit="molC/m3/s"  grid_ref="grid_T_3D" />
@@ -276,20 +279,31 @@
 
 
     <!-- dbio_T on T grid : variables available with diaar5 -->
-    <field id="TPP"         long_name="Total Primary production of phyto"                   unit="mol/m3/s"  grid_ref="grid_T_3D" />
-    <field id="TPNEW"       long_name="New Primary production of phyto"                     unit="mol/m3/s"  grid_ref="grid_T_3D" />
-    <field id="TPBFE"       long_name="Total biogenic iron production"                      unit="mol/m3/s"  grid_ref="grid_T_3D" />
-    <field id="INTDIC"      long_name="DIC content"                                         unit="kg/m2"                          />
-    <field id="O2MIN"       long_name="Oxygen minimum concentration"                        unit="mol/m3"                          />
-    <field id="ZO2MIN"      long_name="Depth of oxygen minimum concentration"               unit="m"                              />
-    <field id="INTNFIX"     long_name="Nitrogen fixation rate : vert. integrated"           unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > Nfix * e3t </field >
-    <field id="INTPPPHYN"   long_name="Vertically integrated primary production by nanophy" unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > PPPHYN * e3t </field >
-    <field id="INTPPPHYD"   long_name="Vertically integrated primary production by diatom"  unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > PPPHYD * e3t </field >
-    <field id="INTPPPHYP"   long_name="Vertically integrated primary production by picophy" unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > PPPHYP * e3t </field >
-    <field id="INTPP"       long_name="Vertically integrated primary production by phyto"   unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > TPP * e3t </field >
-    <field id="INTPNEW"     long_name="Vertically integrated new primary production"        unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > TPNEW * e3t </field >
-    <field id="INTPBFE"     long_name="Vertically integrated of biogenic iron production"   unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > TPBFE * e3t </field >
-    <field id="INTPBSI"     long_name="Vertically integrated of biogenic Si production"     unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > PBSi * e3t </field >
+     <field id="TPP"         long_name="Total Primary production of phyto"                   unit="mol/m3/s"  grid_ref="grid_T_3D" />
+     <field id="TPNEW"       long_name="New Primary production of phyto"                     unit="mol/m3/s"  grid_ref="grid_T_3D" />
+     <field id="TPBFE"       long_name="Total biogenic iron production"                      unit="mol/m3/s"  grid_ref="grid_T_3D" />
+     <field id="INTDIC"      long_name="DIC content"                                         unit="kg/m2"                          />
+     <field id="O2MIN"       long_name="Oxygen minimum concentration"                        unit="mol/m3"                          />
+     <field id="ZO2MIN"      long_name="Depth of oxygen minimum concentration"               unit="m"                              />
+
+
+     <field id="Nfix_e3t"    long_name="Nfix * e3t"        unit="molN/m2/s" grid_ref="grid_T_3D"  > Nfix   * e3t </field >  
+     <field id="PPPHYN_e3t"  long_name="PPPHYN * e3t"      unit="mol/m2/s"  grid_ref="grid_T_3D"  > PPPHYN * e3t </field >  
+     <field id="PPPHYD_e3t"  long_name="PPPHYD * e3t"      unit="mol/m2/s"  grid_ref="grid_T_3D"  > PPPHYD * e3t </field >  
+     <field id="PPPHYP_e3t"  long_name="PPPHYP * e3t"      unit="mol/m2/s"  grid_ref="grid_T_3D"  > PPPHYP * e3t </field >  
+     <field id="PBSi_e3t"    long_name="PBSi * e3t"        unit="mol/m2/s"  grid_ref="grid_T_3D"  > PBSi   * e3t </field >  
+     <field id="TPP_e3t"     long_name="TPP * e3t"         unit="mol/m2/s"  grid_ref="grid_T_3D"  > TPP    * e3t </field >  
+     <field id="TPNEW_e3t"   long_name="TPNEW * e3t"       unit="mol/m2/s"  grid_ref="grid_T_3D"  > TPNEW  * e3t </field >  
+     <field id="TPBFE_e3t"   long_name="TPBFE * e3t"       unit="mol/m2/s"  grid_ref="grid_T_3D"  > TPBFE  * e3t </field >  
+
+     <field id="INTNFIX"     long_name="Nitrogen fixation rate : vert. integrated"           field_ref="Nfix_e3t"     unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPPPHYN"   long_name="Vertically integrated primary production by nanophy" field_ref="PPPHYN_e3t"   unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPPPHYD"   long_name="Vertically integrated primary production by diatom"  field_ref="PPPHYD_e3t"   unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPPPHYP"   long_name="Vertically integrated primary production by picophy" field_ref="PPPHYP_e3t"   unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPP"       long_name="Vertically integrated primary production by phyto"   field_ref="TPP_e3t"      unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPNEW"     long_name="Vertically integrated new primary production"        field_ref="TPNEW_e3t"    unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPBFE"     long_name="Vertically integrated of biogenic iron production"   field_ref="TPBFE_e3t"    unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPBSI"     long_name="Vertically integrated of biogenic Si production"     field_ref="PBSi_e3t"     unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
 
     <!-- PISCES light : variables available with key_pisces_reduced -->
     <field id="FNO3PHY"     long_name="FNO3PHY"                                 unit=""          grid_ref="grid_T_3D" />

cfgs/SHARED/namelist_pisces_ref

@@ -152,7 +152,6 @@
 !-----------------------------------------------------------------------
    pislopen   =  2.       ! P-I slope
    pisloped   =  2.       ! P-I slope  for diatoms
-   xadap      =  0.       ! Adaptation factor to low light
    excretn    =  0.05     ! excretion ratio of phytoplankton
    excretd    =  0.05     ! excretion ratio of diatoms
    bresp      =  0.033    ! Basal respiration rate
@@ -172,7 +171,6 @@
    excretn    =  0.05     ! excretion ratio of phytoplankton
    excretp    =  0.05     ! excretion ratio of picophytoplankton
    excretd    =  0.05     ! excretion ratio of diatoms
-   xadap      =  0.       ! Adaptation factor to low light
    bresp      =  0.02     ! Basal respiration rate
    thetannm   =  0.3      ! Maximum Chl/N in nanophytoplankton
    thetanpm   =  0.3      ! Maximum Chl/N in picophytoplankton