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with 921 additions and 616 deletions
You can't use the standard diagnostic options with the current cycling period.
Choose the "Custom" option, copy the file_def*.xml files that
you want to use into the Rose app and adjust the meaning period
accordingly.
<?xml version="1.0"?>
<!--
============================================================================================================
= output files definition =
= Define your own filesfor ocean dynamics context =
= put the variables you want... =
============================================================================================================
-->
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="1d" min_digits="4">
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="10d" output_freq="10d" output_level="10" split_freq="10d" enabled=".TRUE."> <!-- real monthly files -->
<file id="file8" name_suffix="_grid_T" >
<field field_ref="e3t" name="thkcello" />
<field field_ref="ssh" name="zos" />
<field field_ref="ssh2" name="zossq" />
<field field_ref="sst_con" name="tos_con" />
<field field_ref="sss_abs" name="sos_abs" />
<field field_ref="sbt_con" name="thetaob_con"/>
<field field_ref="sbs_abs" name="sob_abs" />
<field field_ref="toce_con" name="thetao_con" operation="average" freq_op="10d" cell_methods="time: mean (thickness weighted)" > @toce_con_e3t / @e3t </field>
<field field_ref="soce_abs" name="so_abs" operation="average" freq_op="10d" cell_methods="time: mean (thickness weighted)" > @soce_abs_e3t / @e3t </field>
<field field_ref="mldzint_1" name="somxzint1" />
<field field_ref="qt" name="hfds" />
<field field_ref="qsr3d" name="rsdo" />
<field field_ref="empmr" name="sowaflup" />
<field field_ref="ice_cover" name="soicecov" />
<field field_ref="berg_melt" name="ficeberg" />
<field field_ref="berg_melt_qlat" name="berg_latent_heat_flux" />
<field field_ref="emp_oce" name="soemp_oce" />
<field field_ref="emp_ice" name="soemp_ice" />
<field field_ref="snowpre" name="snowpre" />
<field field_ref="precip" name="soprecip" />
<field field_ref="fmmflx" name="fsitherm" />
<field field_ref="runoffs" name="friver" />
<field field_ref="erp" name="so_erp" />
<field field_ref="saltflx" name="sfdsi" />
<field field_ref="qlatisf" name="sohflisf" />
<field field_ref="qhcisf" name="sohfcisf" />
<field field_ref="fwfisf" name="sowflisf" />
</file>
<file id="file9" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="e3u" name="thkcello" />
<field field_ref="ssu" name="sozocrtx" />
<field field_ref="uoce" name="uo" operation="average" freq_op="10d" cell_methods="time: mean (thickness weighted)" > @uoce_e3u / @e3u </field>
<field field_ref="uoce" name="u2o" standard_name="square_of_sea_water_x_velocity" long_name="UU" operation="average" freq_op="10d" cell_methods="time: mean (thickness weighted)" > @uoce2_e3u / @e3u </field>
<field field_ref="utau" name="tauuo" />
</file>
<file id="file10" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="e3v" name="thkcello" />
<field field_ref="ssv" name="somecrty" />
<field field_ref="voce" name="vo" operation="average" freq_op="10d" cell_methods="time: mean (thickness weighted)" > @voce_e3v / @e3v </field>
<field field_ref="voce" name="v2o" standard_name="square_of_sea_water_y_velocity" long_name="VV" operation="average" freq_op="10d" cell_methods="time: mean (thickness weighted)" > @voce2_e3v / @e3v </field>
<field field_ref="vtau" name="tauvo" />
</file>
<file id="file11" name_suffix="_grid_W" description="ocean W grid variables" >
<field field_ref="e3w" long_name="W-cell thickness" />
<field field_ref="woce" name="wo" />
<field field_ref="avt" name="difvho" />
<field field_ref="avm" name="difvmo" />
</file>
</file_group>
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
<?xml version="1.0"?>
<!--
============================================================================================================
= output files definition =
= Define your own filesfor ocean dynamics context =
= put the variables you want... =
============================================================================================================
-->
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="1d" min_digits="4">
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="1m" output_freq="1mo" output_level="10" split_freq="1mo" enabled=".TRUE."> <!-- real monthly files -->
<file id="file8" name_suffix="_grid_T" >
<field field_ref="e3t" name="thkcello" />
<field field_ref="ssh" name="zos" />
<field field_ref="ssh2" name="zossq" />
<field field_ref="sst_con" name="tos_con" />
<field field_ref="sss_abs" name="sos_abs" />
<field field_ref="sbt_con" name="thetaob_con"/>
<field field_ref="sbs_abs" name="sob_abs" />
<field field_ref="toce_con" name="thetao_con" operation="average" freq_op="1mo" cell_methods="time: mean (thickness weighted)" > @toce_con_e3t / @e3t </field>
<field field_ref="soce_abs" name="so_abs" operation="average" freq_op="1mo" cell_methods="time: mean (thickness weighted)" > @soce_abs_e3t / @e3t </field>
<field field_ref="mldzint_1" name="somxzint1" />
<field field_ref="qt" name="hfds" />
<field field_ref="qsr3d" name="rsdo" />
<field field_ref="empmr" name="sowaflup" />
<field field_ref="ice_cover" name="soicecov" />
<field field_ref="berg_melt" name="ficeberg" />
<field field_ref="berg_melt_qlat" name="berg_latent_heat_flux" />
<field field_ref="emp_oce" name="soemp_oce" />
<field field_ref="emp_ice" name="soemp_ice" />
<field field_ref="snowpre" name="snowpre" />
<field field_ref="precip" name="soprecip" />
<field field_ref="fmmflx" name="fsitherm" />
<field field_ref="runoffs" name="friver" />
<field field_ref="erp" name="so_erp" />
<field field_ref="saltflx" name="sfdsi" />
<field field_ref="qlatisf_cav" name="sohflisf" />
<field field_ref="qhcisf_cav" name="sohfcisf" />
<field field_ref="fwfisf_cav" name="sowflisf" />
</file>
<file id="file9" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="e3u" name="thkcello" />
<field field_ref="ssu" name="sozocrtx" />
<field field_ref="uoce" name="uo" operation="average" freq_op="1mo" cell_methods="time: mean (thickness weighted)" > @uoce_e3u / @e3u </field>
<field field_ref="uoce" name="u2o" standard_name="square_of_sea_water_x_velocity" long_name="UU" operation="average" freq_op="1mo" cell_methods="time: mean (thickness weighted)" > @uoce2_e3u / @e3u </field>
<field field_ref="utau" name="tauuo" />
</file>
<file id="file10" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="e3v" name="thkcello" />
<field field_ref="ssv" name="somecrty" />
<field field_ref="voce" name="vo" operation="average" freq_op="1mo" cell_methods="time: mean (thickness weighted)" > @voce_e3v / @e3v </field>
<field field_ref="voce" name="v2o" standard_name="square_of_sea_water_y_velocity" long_name="VV" operation="average" freq_op="1mo" cell_methods="time: mean (thickness weighted)" > @voce2_e3v / @e3v </field>
<field field_ref="vtau" name="tauvo" />
</file>
<file id="file11" name_suffix="_grid_W" description="ocean W grid variables" >
<field field_ref="e3w" long_name="W-cell thickness" />
<field field_ref="woce" name="wo" />
<field field_ref="avt" name="difvho" />
<field field_ref="avm" name="difvmo" />
</file>
</file_group>
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
You can't use the standard diagnostic options with the current cycling period.
Choose the "Custom" option, copy the file_def*.xml files that
you want to use into the Rose app and adjust the meaning period
accordingly.
This diff is collapsed.
This diff is collapsed.
You can't use the standard diagnostic options with the current cycling period.
Choose the "Custom" option, copy the file_def*.xml files that
you want to use into the Rose app and adjust the meaning period
accordingly.
<?xml version="1.0"?>
<simulation>
<simulation>
<!-- ============================================================================================ -->
<!-- XIOS context -->
......@@ -8,12 +8,12 @@
<context id="xios" >
<variable_definition>
<variable id="info_level" type="int">10</variable>
<variable id="using_server" type="bool">false</variable>
<variable id="using_oasis" type="bool">false</variable>
<variable id="oasis_codes_id" type="string" >oceanx</variable>
<variable id="info_level" type="int">-1</variable>
<variable id="using_server" type="bool">true</variable>
<variable id="using_oasis" type="bool">false</variable>
<variable id="oasis_codes_id" type="string" >oceanx</variable>
</variable_definition>
</context>
......
<?xml version="1.0"?>
<simulation>
<!-- ============================================================================================ -->
<!-- XIOS context -->
<!-- ============================================================================================ -->
<context id="xios" >
<variable_definition>
<variable id="info_level" type="int">-1</variable>
<variable id="using_server" type="bool">true</variable>
<variable id="using_oasis" type="bool">true</variable>
<variable id="oasis_codes_id" type="string" >toyoce</variable>
</variable_definition>
</context>
<!-- ============================================================================================ -->
<!-- NEMO CONTEXT add and suppress the components you need -->
<!-- ============================================================================================ -->
<context id="nemo" src="./context_nemo.xml"/> <!-- NEMO -->
</simulation>
../../SHARED/domain_def_nemo.xml
\ No newline at end of file
../../SHARED/field_def_nemo-ice.xml
\ No newline at end of file
../../SHARED/field_def_nemo-oce.xml
\ No newline at end of file
<?xml version="1.0"?>
<!--
============================================================================================================
= output files definition =
= Define your own filesfor ocean dynamics context =
= put the variables you want... =
============================================================================================================
-->
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="5d" min_digits="4">
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file11" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="e3t" />
<field field_ref="toce" name="thetao" />
<field field_ref="soce" name="so" />
<field field_ref="sst" name="tos" />
<field field_ref="sss" name="sos" />
<field field_ref="ssh" name="zos" />
<field field_ref="mldkz5" />
<field field_ref="mldr10_1" />
<field field_ref="sbt" />
<field field_ref="heatc" name="heatc" />
<field field_ref="saltc" name="saltc" />
<field field_ref="empmr" name="wfo" />
<field field_ref="qsr_oce" name="qsr_oce" />
<field field_ref="qns_oce" name="qns_oce" />
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
<!-- ice and snow -->
<field field_ref="snowpre" />
</file>
<file id="file12" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="e3u" />
<field field_ref="ssu" name="uos" />
<field field_ref="uoce" name="uo" />
<field field_ref="utau" name="tauuo" />
</file>
<file id="file13" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="e3v" />
<field field_ref="ssv" name="vos" />
<field field_ref="voce" name="vo" />
<field field_ref="vtau" name="tauvo" />
</file>
<file id="file14" name_suffix="_grid_ABL" description="ABL grid variables" >
<field field_ref="u_abl" />
<field field_ref="v_abl" />
<field field_ref="t_abl" />
<field field_ref="q_abl" />
<field field_ref="uvz1_abl" />
<field field_ref="tz1_abl" />
<field field_ref="qz1_abl" />
<field field_ref="uvz1_dta" />
<field field_ref="tz1_dta" />
<field field_ref="qz1_dta" />
<field field_ref="pblh" />
</file>
</file_group>
</file_definition>
../../SHARED/grid_def_nemo.xml
\ No newline at end of file
This diff is collapsed.
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! SI3 configuration namelist: Overwrites SHARED/namelist_ice_ref
!! 1 - Generic parameters (nampar)
!! 2 - Ice thickness discretization (namitd)
!! 3 - Ice dynamics (namdyn)
!! 4 - Ice ridging/rafting (namdyn_rdgrft)
!! 5 - Ice rheology (namdyn_rhg)
!! 6 - Ice advection (namdyn_adv)
!! 7 - Ice surface boundary conditions (namsbc)
!! 8 - Ice thermodynamics (namthd)
!! 9 - Ice heat diffusion (namthd_zdf)
!! 10 - Ice lateral melting (namthd_da)
!! 11 - Ice growth in open water (namthd_do)
!! 12 - Ice salinity (namthd_sal)
!! 13 - Ice melt ponds (namthd_pnd)
!! 14 - Ice initialization (namini)
!! 15 - Ice/snow albedos (namalb)
!! 16 - Ice diagnostics (namdia)
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!
!------------------------------------------------------------------------------
&nampar ! Generic parameters
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namitd ! Ice discretization
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namdyn ! Ice dynamics
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namdyn_rdgrft ! Ice ridging/rafting
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namdyn_rhg ! Ice rheology
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namdyn_adv ! Ice advection
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namsbc ! Ice surface boundary conditions
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namthd ! Ice thermodynamics
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namthd_zdf ! Ice heat diffusion
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namthd_da ! Ice lateral melting
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namthd_do ! Ice growth in open water
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namthd_sal ! Ice salinity
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namthd_pnd ! Melt ponds
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namini ! Ice initialization
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namalb ! albedo parameters
!------------------------------------------------------------------------------
/
!------------------------------------------------------------------------------
&namdia ! Diagnostics
!------------------------------------------------------------------------------
/
../../SHARED/namelist_ice_ref
\ No newline at end of file
../../SHARED/namelist_ref
\ No newline at end of file
bld::tool::fppkeys key_si3 key_xios key_qco
......@@ -114,7 +114,7 @@
sn_trcsbc(14) = 'dust.orca.new' , -1 , 'dustfer' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcsbc(23) = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly' , '' , '' , ''
rn_trsfac(5) = 3.774194e-02 ! ( 1E-3 / 31. * 117 )
rn_trsfac(7) = 9.572954e-03 ! ( 8.8 / 28.1 )
rn_trsfac(7) = 9.572954e-03 ! ( 0.269 / 28.1 )
rn_trsfac(14) = 6.2667860e-04 ! ( 0.035 / 55.85 )
rn_trsfac(23) = 5.2232143e-01 ! ( From kgN m-2 s-1 to molC l-1 ====> zfact = 7.3125/14 )
rn_sbc_time = 1. ! Time scaling factor for SBC and CBC data (seconds in a day)
......