cfgs/SHARED/field_def_nemo-pisces.xml

@@ -183,6 +183,9 @@
     <field id="PPNEWN"      long_name="New Primary production of nanophyto"     unit="molC/m3/s"  grid_ref="grid_T_3D" />
     <field id="PPNEWP"      long_name="New Primary production of picophyto"     unit="molC/m3/s"  grid_ref="grid_T_3D" />
     <field id="PPNEWD"      long_name="New Primary production of diatoms"       unit="molC/m3/s"  grid_ref="grid_T_3D" />
+    <field id="GPPHYN"      long_name="Gross Primary production of nanophyto"   unit="molC/m3/s"  grid_ref="grid_T_3D" />
+    <field id="GPPHYP"      long_name="Gross Primary production of picophyto"   unit="molC/m3/s"  grid_ref="grid_T_3D" />
+    <field id="GPPHYD"      long_name="Gross Primary production of diatoms"     unit="molC/m3/s"  grid_ref="grid_T_3D" />
     <field id="PBSi"        long_name="Primary production of Si diatoms"        unit="molC/m3/s"  grid_ref="grid_T_3D" />
     <field id="PFeN"        long_name="Primary production of nano iron"         unit="molC/m3/s"  grid_ref="grid_T_3D" />
     <field id="PFeP"        long_name="Primary production of pico iron"         unit="molC/m3/s"  grid_ref="grid_T_3D" />
@@ -276,20 +279,31 @@
 
 
     <!-- dbio_T on T grid : variables available with diaar5 -->
-    <field id="TPP"         long_name="Total Primary production of phyto"                   unit="mol/m3/s"  grid_ref="grid_T_3D" />
-    <field id="TPNEW"       long_name="New Primary production of phyto"                     unit="mol/m3/s"  grid_ref="grid_T_3D" />
-    <field id="TPBFE"       long_name="Total biogenic iron production"                      unit="mol/m3/s"  grid_ref="grid_T_3D" />
-    <field id="INTDIC"      long_name="DIC content"                                         unit="kg/m2"                          />
-    <field id="O2MIN"       long_name="Oxygen minimum concentration"                        unit="mol/m3"                          />
-    <field id="ZO2MIN"      long_name="Depth of oxygen minimum concentration"               unit="m"                              />
-    <field id="INTNFIX"     long_name="Nitrogen fixation rate : vert. integrated"           unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > Nfix * e3t </field >
-    <field id="INTPPPHYN"   long_name="Vertically integrated primary production by nanophy" unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > PPPHYN * e3t </field >
-    <field id="INTPPPHYD"   long_name="Vertically integrated primary production by diatom"  unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > PPPHYD * e3t </field >
-    <field id="INTPPPHYP"   long_name="Vertically integrated primary production by picophy" unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > PPPHYP * e3t </field >
-    <field id="INTPP"       long_name="Vertically integrated primary production by phyto"   unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > TPP * e3t </field >
-    <field id="INTPNEW"     long_name="Vertically integrated new primary production"        unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > TPNEW * e3t </field >
-    <field id="INTPBFE"     long_name="Vertically integrated of biogenic iron production"   unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > TPBFE * e3t </field >
-    <field id="INTPBSI"     long_name="Vertically integrated of biogenic Si production"     unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" > PBSi * e3t </field >
+     <field id="TPP"         long_name="Total Primary production of phyto"                   unit="mol/m3/s"  grid_ref="grid_T_3D" />
+     <field id="TPNEW"       long_name="New Primary production of phyto"                     unit="mol/m3/s"  grid_ref="grid_T_3D" />
+     <field id="TPBFE"       long_name="Total biogenic iron production"                      unit="mol/m3/s"  grid_ref="grid_T_3D" />
+     <field id="INTDIC"      long_name="DIC content"                                         unit="kg/m2"                          />
+     <field id="O2MIN"       long_name="Oxygen minimum concentration"                        unit="mol/m3"                          />
+     <field id="ZO2MIN"      long_name="Depth of oxygen minimum concentration"               unit="m"                              />
+
+
+     <field id="Nfix_e3t"    long_name="Nfix * e3t"        unit="molN/m2/s" grid_ref="grid_T_3D"  > Nfix   * e3t </field >  
+     <field id="PPPHYN_e3t"  long_name="PPPHYN * e3t"      unit="mol/m2/s"  grid_ref="grid_T_3D"  > PPPHYN * e3t </field >  
+     <field id="PPPHYD_e3t"  long_name="PPPHYD * e3t"      unit="mol/m2/s"  grid_ref="grid_T_3D"  > PPPHYD * e3t </field >  
+     <field id="PPPHYP_e3t"  long_name="PPPHYP * e3t"      unit="mol/m2/s"  grid_ref="grid_T_3D"  > PPPHYP * e3t </field >  
+     <field id="PBSi_e3t"    long_name="PBSi * e3t"        unit="mol/m2/s"  grid_ref="grid_T_3D"  > PBSi   * e3t </field >  
+     <field id="TPP_e3t"     long_name="TPP * e3t"         unit="mol/m2/s"  grid_ref="grid_T_3D"  > TPP    * e3t </field >  
+     <field id="TPNEW_e3t"   long_name="TPNEW * e3t"       unit="mol/m2/s"  grid_ref="grid_T_3D"  > TPNEW  * e3t </field >  
+     <field id="TPBFE_e3t"   long_name="TPBFE * e3t"       unit="mol/m2/s"  grid_ref="grid_T_3D"  > TPBFE  * e3t </field >  
+
+     <field id="INTNFIX"     long_name="Nitrogen fixation rate : vert. integrated"           field_ref="Nfix_e3t"     unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPPPHYN"   long_name="Vertically integrated primary production by nanophy" field_ref="PPPHYN_e3t"   unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPPPHYD"   long_name="Vertically integrated primary production by diatom"  field_ref="PPPHYD_e3t"   unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPPPHYP"   long_name="Vertically integrated primary production by picophy" field_ref="PPPHYP_e3t"   unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPP"       long_name="Vertically integrated primary production by phyto"   field_ref="TPP_e3t"      unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPNEW"     long_name="Vertically integrated new primary production"        field_ref="TPNEW_e3t"    unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPBFE"     long_name="Vertically integrated of biogenic iron production"   field_ref="TPBFE_e3t"    unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
+     <field id="INTPBSI"     long_name="Vertically integrated of biogenic Si production"     field_ref="PBSi_e3t"     unit="mol/m2/s"  grid_ref="grid_T_vsum"  detect_missing_value="true" />
 
     <!-- PISCES light : variables available with key_pisces_reduced -->
     <field id="FNO3PHY"     long_name="FNO3PHY"                                 unit=""          grid_ref="grid_T_3D" />

cfgs/SHARED/namelist_pisces_ref

@@ -152,7 +152,6 @@
 !-----------------------------------------------------------------------
    pislopen   =  2.       ! P-I slope
    pisloped   =  2.       ! P-I slope  for diatoms
-   xadap      =  0.       ! Adaptation factor to low light
    excretn    =  0.05     ! excretion ratio of phytoplankton
    excretd    =  0.05     ! excretion ratio of diatoms
    bresp      =  0.033    ! Basal respiration rate
@@ -172,7 +171,6 @@
    excretn    =  0.05     ! excretion ratio of phytoplankton
    excretp    =  0.05     ! excretion ratio of picophytoplankton
    excretd    =  0.05     ! excretion ratio of diatoms
-   xadap      =  0.       ! Adaptation factor to low light
    bresp      =  0.02     ! Basal respiration rate
    thetannm   =  0.3      ! Maximum Chl/N in nanophytoplankton
    thetanpm   =  0.3      ! Maximum Chl/N in picophytoplankton

cfgs/SPITZ12/EXPREF/namelist_cfg

@@ -94,8 +94,8 @@
    !                    !  bulk algorithm :
    ln_NCAR    = .true.     ! "NCAR"      algorithm   (Large and Yeager 2008)
       !
-      ln_Cd_L12   = .false.   !  air-ice drags = F(ice concentration) (Lupkes et al. 2012)
-      ln_Cd_L15   = .true.    !  air-ice drags = F(ice concentration) (Lupkes et al. 2015)
+      ln_Cx_ice_LU12   = .false.   !  air-ice drags = F(ice concentration) (Lupkes et al. 2012)
+      ln_Cx_ice_LG15   = .true.    !  air-ice drags = F(ice concentration) (Lupkes et al. 2015)
       !
    cn_dir = './'  !  root directory for the bulk data location
    !___________!_________________________!___________________!___________!_____________!________!___________!______________________________________!__________!_______________!