Update of namelist blocks in preparation to 4.2 release

doc/namelists/namp4zprod

@@ -9,8 +9,8 @@
    bresp      =  0.033    ! Basal respiration rate
    chlcnm     =  0.033    ! Maximum Chl/C in nanophytoplankton
    chlcdm     =  0.05     ! Maximum Chl/C in diatoms
-   chlcmin    =  0.004    ! Minimum Chl/c in phytoplankton
-   fecnm      =  40E-6    ! Maximum Fe/C in nanophytoplankton
-   fecdm      =  40E-6    ! Maximum Fe/C in diatoms
-   grosip     =  0.159    ! mean Si/C ratio
+   chlcmin    =  0.003    ! Minimum Chl/c in phytoplankton
+   fecnm      =  60E-6    ! Maximum Fe/C in nanophytoplankton
+   fecdm      =  60E-6    ! Maximum Fe/C in diatoms
+   grosip     =  0.13     ! mean Si/C ratio
 /

doc/namelists/namp4zzoo

 !-----------------------------------------------------------------------
 &namp4zzoo     !   parameters for microzooplankton for PISCES std      - ln_p4z
 !-----------------------------------------------------------------------
-   part       =  0.5      ! part of calcite not dissolved in microzoo guts
-   grazrat    =  3.0      ! maximal zoo grazing rate
-   resrat     =  0.03     ! exsudation rate of zooplankton
-   mzrat      =  0.004    ! zooplankton mortality rate
-   xprefc     =  0.1      ! Microzoo preference for POM
+   part       =  0.75     ! part of calcite not dissolved in microzoo guts
+   grazrat    =  2.0      ! maximal zoo grazing rate
+   resrat     =  0.02     ! Linear mortality rate of zooplankton
+   mzrat      =  0.005    ! zooplankton mortality rate
+   xprefc     =  0.15      ! Microzoo preference for POM
    xprefn     =  1.       ! Microzoo preference for Nanophyto
-   xprefd     =  0.6      ! Microzoo preference for Diatoms
+   xprefd     =  0.8      ! Microzoo preference for Diatoms
    xthreshdia =  1.E-8    ! Diatoms feeding threshold for microzooplankton 
    xthreshphy =  1.E-8    ! Nanophyto feeding threshold for microzooplankton 
    xthreshpoc =  1.E-8    ! POC feeding threshold for microzooplankton 
    xthresh    =  3.E-7    ! Food threshold for feeding
    xkgraz     =  20.E-6   ! half sturation constant for grazing
-   epsher     =  0.3      ! Efficiency of microzoo growth
-   epshermin  =  0.3      ! Minimum efficiency of microzoo growth
+   epsher     =  0.4     ! Efficiency of microzoo growth
+   epshermin  =  0.4     ! Minimum efficiency of microzoo growth
    sigma1     =  0.6      ! Fraction of microzoo excretion as DOM
    unass      =  0.3      ! non assimilated fraction of phyto by zoo
+   xsigma     =  0.5      ! Predation window size
+   xsigmadel  =  1.0      ! Predation window size scaling
 /

doc/namelists/namp5zlim

 !-----------------------------------------------------------------------
 &namp5zlim     !   parameters for nutrient limitations PISCES QUOTA    - ln_p5z
 !-----------------------------------------------------------------------
-   concnno3   =  3e-6     ! Nitrate half saturation of nanophytoplankton
-   concpno3   =  1e-6
-   concdno3   =  4E-6     ! Phosphate half saturation for diatoms
-   concnnh4   =  1.5E-6   ! NH4 half saturation for phyto
-   concpnh4   =  4E-7
-   concdnh4   =  2E-6     ! NH4 half saturation for diatoms
-   concnpo4   =  3E-6     ! PO4 half saturation for phyto
-   concppo4   =  1.5E-6
-   concdpo4   =  4E-6     ! PO4 half saturation for diatoms
-   concnfer   =  3E-9   ! Iron half saturation for phyto
-   concpfer   =  1.5E-9
-   concdfer   =  4E-9   ! Iron half saturation for diatoms
-   concbfe    =  1.E-11   ! Half-saturation for Fe limitation of Bacteria
-   concbnh4   =  1.E-7    ! NH4 half saturation for phyto
-   concbno3   =  5.E-7    ! Phosphate half saturation for diatoms
-   concbpo4   =  1E-7     ! Phosphate half saturation for bacteria
+   concnno3   =  2e-6     ! Nitrate half saturation of nanophytoplankton
+   concpno3   =  7e-7     ! Nitrate half saturation of picophytoplankton
+   concdno3   =  3E-6     ! Phosphate half saturation for diatoms
+   concnnh4   =  2E-6     ! NH4 half saturation for phyto
+   concpnh4   =  7E-7     ! NH4 half saturation for picophytoplankton
+   concdnh4   =  3E-6     ! NH4 half saturation for diatoms
+   concnpo4   =  2E-6     ! PO4 half saturation for phyto
+   concppo4   =  7E-7     ! PO4 half saturation for picophytoplankton
+   concdpo4   =  3E-6     ! PO4 half saturation for diatoms
+   concnfer   =  3E-9     ! Iron half saturation for phyto
+   concpfer   =  1E-9     ! Iron half saturation for picophytoplankton
+   concdfer   =  4.5E-9   ! Iron half saturation for diatoms
+   concbfe    =  3E-11    ! Half-saturation for Fe limitation of Bacteria
+   concbnh4   =  4.E-7    ! NH4 half saturation for phyto
+   concbno3   =  4.E-7    ! Phosphate half saturation for diatoms
+   concbpo4   =  4.E-7    ! Phosphate half saturation for bacteria
    xsizedia   =  1.E-6    ! Minimum size criteria for diatoms
    xsizephy   =  1.E-6    ! Minimum size criteria for phyto
-   xsizepic   =  1.E-6
-   xsizern    =  1.0      ! Size ratio for nanophytoplankton
-   xsizerp    =  1.0
+   xsizepic   =  5.E-7    ! Minimum size criteria for picophyto
+   xsizern    =  3.0      ! Size ratio for nanophytoplankton
+   xsizerp    =  2.0      ! Size ratio for picophytoplankton
    xsizerd    =  4.0      ! Size ratio for diatoms
-   xksi1      =  2.E-6    ! half saturation constant for Si uptake
-   xksi2      =  20E-6  ! half saturation constant for Si/C
+   xksi1      =  8.E-6    ! half saturation constant for Si uptake
+   xksi2      =  20E-6    ! half saturation constant for Si/C
    xkdoc      =  417.E-6  ! half-saturation constant of DOC remineralization
-   caco3r     =  0.35     ! mean rain ratio
+   caco3r     =  0.3      ! mean rain ratio
    oxymin     =  1.E-6    ! Half-saturation constant for anoxia
 /

doc/namelists/namp5zmes

 !-----------------------------------------------------------------------
 &namp5zmes     !   parameters for mesozooplankton
 !-----------------------------------------------------------------------
-   part2      =  0.75     ! part of calcite not dissolved in mesozoo guts
-   grazrat2   =  0.85     ! maximal mesozoo grazing rate
-   bmetexc2   =  .true.   ! Metabolic use of excess carbon 
-   resrat2    =  0.005    ! exsudation rate of mesozooplankton
-   mzrat2     =  0.02     ! mesozooplankton mortality rate
-   xpref2d    =  1.       ! zoo preference for phyto
-   xpref2p    =  1.       ! zoo preference for POC
-   xpref2z    =  1.       ! zoo preference for zoo
-   xpref2m    =  0.2      ! meso preference for zoo
-   xpref2c    =  0.3      ! zoo preference for poc
-   xthresh2zoo = 1E-8     ! zoo feeding threshold for mesozooplankton
-   xthresh2dia = 1E-8     ! diatoms feeding threshold for mesozooplankton
-   xthresh2phy = 1E-8     ! nanophyto feeding threshold for mesozooplankton
-   xthresh2mes = 1E-8     ! meso feeding threshold for mesozooplankton
-   xthresh2poc = 1E-8     ! poc feeding threshold for mesozooplankton
+   part2       =  0.75     ! part of calcite not dissolved in mesozoo guts
+   grazrat2    =  0.5      ! maximal mesozoo grazing rate
+   bmetexc2    =  .true.   ! Metabolic use of excess carbon 
+   resrat2     =  0.005    ! exsudation rate of mesozooplankton
+   mzrat2      =  0.01     ! mesozooplankton mortality rate
+   xpref2d     =  1.       ! meso preference for diatoms
+   xpref2n     =  0.3      ! meso preference for nano
+   xpref2z     =  1.       ! meso preference for zoo
+   xpref2m     =  0.       ! meso preference for zoo
+   xpref2c     =  0.3      ! meso preference for poc
+   xthresh2zoo =  1E-8     ! zoo feeding threshold for mesozooplankton
+   xthresh2dia =  1E-8     ! diatoms feeding threshold for mesozooplankton
+   xthresh2phy =  1E-8     ! nanophyto feeding threshold for mesozooplankton
+   xthresh2mes =  1E-8     ! meso feeding threshold for mesozooplankton
+   xthresh2poc =  1E-8     ! poc feeding threshold for mesozooplankton
    xthresh2    =  3E-7     ! Food threshold for grazing
    xkgraz2     =  20.E-6   ! half sturation constant for meso grazing
    epsher2     =  0.5      ! Efficicency of Mesozoo growth
-   epsher2min  =  0.2     ! Minimum efficiency of mesozoo growth
-   ssigma2     =  0.5     ! Fraction excreted as semi-labile DOM
-   srespir2    =  0.2     ! Active respiration
-   unass2c     =  0.3     ! non assimilated fraction of P by mesozoo
-   unass2n     =  0.3     ! non assimilated fraction of N by mesozoo
-   unass2p     =  0.3     ! non assimilated fraction of P by mesozoo
-   grazflux   =  3.e3     ! flux-feeding rate
+   epsher2min  =  0.5      ! Minimum efficiency of mesozoo growth
+   ssigma2     =  0.5      ! Fraction excreted as semi-labile DOM
+   srespir2    =  0.2      ! Active respiration
+   unass2c     =  0.3      ! non assimilated fraction of C by mesozoo
+   unass2n     =  0.3      ! non assimilated fraction of N by mesozoo
+   unass2p     =  0.3      ! non assimilated fraction of P by mesozoo
+   xsigma2     =  0.5      ! Predation window size
+   xsigma2del  =  1.0      ! Predation window size scaling
+   grazflux    =  3.e3     ! flux-feeding rate
+   ln_dvm_meso =  .false.  ! Activates DVM for mesozooplankton
+   xfracmig    =  0.25     ! Fraction of mesozooplankton performing DVM
 /

doc/namelists/namp5zmort

@@ -3,9 +3,8 @@
 !-----------------------------------------------------------------------
    wchln      =  0.01     ! quadratic mortality of nanophytoplankton
    wchlp      =  0.01     ! quadratic mortality of picophytoplankton
-   wchld      =  0.01     ! maximum quadratic mortality of diatoms
-   wchldm     =  0.02     ! maximum quadratic mortality of diatoms
+   wchld      =  0.03     ! maximum quadratic mortality of diatoms
    mpratn     =  0.01     ! nanophytoplankton mortality rate
    mpratp     =  0.01     ! picophytoplankton mortality rate
-   mprat2     =  0.01     ! Diatoms mortality rate
+   mpratd     =  0.01     ! Diatoms mortality rate
 /

doc/namelists/namp5zprod

 !-----------------------------------------------------------------------
 &namp5zprod    !   parameters for phytoplankton growth for PISCES quota- ln_p5z
 !-----------------------------------------------------------------------
-   pislopen   =  3.       ! P-I slope
-   pislopep   =  3.       ! P-I slope for picophytoplankton
-   pisloped   =  3.       ! P-I slope  for diatoms
+   pislopen   =  5        ! P-I slope of nanophytoplankton
+   pislopep   =  5        ! P-I slope for picophytoplankton
+   pisloped   =  5        ! P-I slope  for diatoms
    excretn    =  0.05     ! excretion ratio of phytoplankton
    excretp    =  0.05     ! excretion ratio of picophytoplankton
    excretd    =  0.05     ! excretion ratio of diatoms
    xadap      =  0.       ! Adaptation factor to low light
    bresp      =  0.02     ! Basal respiration rate
-   thetannm   =  0.25     ! Maximum Chl/N in nanophytoplankton
-   thetanpm   =  0.25     ! Maximum Chl/N in picophytoplankton
-   thetandm   =  0.3      ! Maximum Chl/N in diatoms
-   chlcmin    =  0.004    ! Minimum Chl/c in phytoplankton
-   grosip     =  0.131    ! mean Si/C ratio
+   thetannm   =  0.3      ! Maximum Chl/N in nanophytoplankton
+   thetanpm   =  0.3      ! Maximum Chl/N in picophytoplankton
+   thetandm   =  0.4      ! Maximum Chl/N in diatoms
+   chlcmin    =  0.003    ! Minimum Chl/c in phytoplankton
+   grosip     =  0.12     ! mean Si/C ratio
 /

doc/namelists/namp5zquota

 !-----------------------------------------------------------------------
 &namp5zquota   !   parameters for nutrient limitations PISCES quota    - ln_p5z
 !-----------------------------------------------------------------------
-   qfnopt     =  7.E-6    ! Optimal Fe quota of nanophyto
-   qfpopt     =  7.E-6    ! Optimal Fe quota of picophyto
-   qfdopt     =  7.E-6    ! Optimal quota of diatoms
-   qnnmin     =  0.29     ! Minimal N quota for nano
-   qnnmax     =  1.39     ! Maximal N quota for nano
-   qpnmin     =  0.28     ! Minimal P quota for nano
-   qpnmax     =  1.06     ! Maximal P quota for nano
-   qnpmin     =  0.42     ! Minimal N quota for pico
+   qfnopt     =  12.E-6   ! Optimal Fe quota of nanophyto
+   qfpopt     =  12.E-6   ! Optimal Fe quota of picophyto
+   qfdopt     =  12.E-6   ! Optimal quota of diatoms
+   qnnmin     =  0.61     ! Minimal N quota for nano
+   qnnmax     =  1.25     ! Maximal N quota for nano
+   qpnmin     =  0.24     ! Minimal P quota for nano
+   qpnmax     =  1.35     ! Maximal P quota for nano
+   qnpmin     =  1.02     ! Minimal N quota for pico
    qnpmax     =  1.39     ! Maximal N quota for pico
-   qppmin     =  0.25     ! Minimal P quota for pico
-   qppmax     =  0.7      ! Maximal P quota for pico
-   qndmin     =  0.25     ! Minimal N quota for diatoms
-   qndmax     =  1.39     ! Maximal N quota for diatoms
-   qpdmin     =  0.29     ! Minimal P quota for diatoms
-   qpdmax     =  1.32     ! Maximal P quota for diatoms
-   qfnmax     =  40E-6    ! Maximal Fe quota for nano
-   qfpmax     =  40E-6    ! Maximal Fe quota for pico
-   qfdmax     =  40E-6    ! Maximal Fe quota for diatoms
+   qppmin     =  0.19     ! Minimal P quota for pico
+   qppmax     =  1.15     ! Maximal P quota for pico
+   qndmin     =  0.51     ! Minimal N quota for diatoms
+   qndmax     =  1.25     ! Maximal N quota for diatoms
+   qpdmin     =  0.24     ! Minimal P quota for diatoms
+   qpdmax     =  1.525    ! Maximal P quota for diatoms
+   qfnmax     =  60E-6    ! Maximal Fe quota for nano
+   qfpmax     =  60E-6    ! Maximal Fe quota for pico
+   qfdmax     =  60E-6    ! Maximal Fe quota for diatoms
 /

doc/namelists/namp5zzoo

 !-----------------------------------------------------------------------
 &namp5zzoo     !   parameters for microzooplankton
 !-----------------------------------------------------------------------
-   part       =  0.5      ! part of calcite not dissolved in microzoo gutsa
-   grazrat    =  2.75     ! maximal zoo grazing rate
+   part       =  0.75     ! part of calcite not dissolved in microzoo gutsa
+   grazrat    =  2.0      ! maximal zoo grazing rate
    bmetexc    =  .true.   ! Metabolic use of excess carbon
-   resrat     =  0.03     ! exsudation rate of zooplankton
+   resrat     =  0.02     ! exsudation rate of zooplankton
    mzrat      =  0.005    ! zooplankton mortality rate
-   xprefc     =  0.1      ! Microzoo preference for POM
-   xprefn     =  1.       ! Microzoo preference for Nanophyto
-   xprefp     =  1.6      ! Microzoo preference for picophyto
+   xprefc     =  0.15     ! Microzoo preference for POM
+   xprefn     =  1.0      ! Microzoo preference for Nanophyto
+   xprefp     =  1.0      ! Microzoo preference for picophyto
    xprefd     =  1.0      ! Microzoo preference for Diatoms
-   xprefz     =  0.3      ! Microzoo preference for microzooplankton
+   xprefz     =  0.       ! Microzoo preference for microzooplankton
    xthreshdia =  1.E-8    ! Diatoms feeding threshold for microzooplankton
    xthreshphy =  1.E-8    ! Nanophyto feeding threshold for microzooplankton
-   xthreshpic =  1.E-8
-   xthreshzoo =  1.E-8    ! Nanophyto feeding threshold for microzooplankton
+   xthreshpic =  1.E-8    ! Picophyto feeding threshold for microzooplankton
+   xthreshzoo =  1.E-8    ! Microzoo feeding threshold for microzooplankton
    xthreshpoc =  1.E-8    ! POC feeding threshold for microzooplankton
    xthresh    =  3.E-7    ! Food threshold for feeding
-   xkgraz     =  20.E-6   ! half sturation constant for grazing
+   xkgraz     =  20.E-6   ! half saturation constant for grazing
    epsher     =  0.5      ! Efficiency of microzoo growth
-   epshermin  =  0.2      ! Minimum efficiency of microzoo growth
+   epshermin  =  0.5      ! Minimum efficiency of microzoo growth
    ssigma     =  0.5      ! Fraction excreted as semi-labile DOM
    srespir    =  0.2      ! Active respiration
    unassc     =  0.3      ! non assimilated fraction of C by zoo
-   unassn     =  0.3      ! non assimilated fraction of C by zoo
-   unassp     =  0.3      ! non assimilated fraction of C by zoo
+   unassn     =  0.3      ! non assimilated fraction of N by zoo
+   unassp     =  0.3      ! non assimilated fraction of P by zoo
+   xsigma     =  0.5      ! Predation window size
+   xsigmadel  =  1.0      ! Predation window size scaling
 /

doc/namelists/nampar

@@ -3,7 +3,7 @@
 !------------------------------------------------------------------------------
    jpl              =   5             !  number of ice  categories
    nlay_i           =   2             !  number of ice  layers
-   nlay_s           =   1             !  number of snow layers (only 1 is working)
+   nlay_s           =   2             !  number of snow layers
    ln_virtual_itd   =   .false.       !  virtual ITD mono-category parameterization (jpl=1 only)
                                       !     i.e. enhanced thermal conductivity & virtual thin ice melting
    ln_icedyn        = .true.          !  ice dynamics (T) or not (F)

doc/namelists/nampisatm

@@ -3,7 +3,7 @@
 !-----------------------------------------------------------------------
 !              !  file name   ! frequency (hours) ! variable  ! time interp. !  clim  ! 'yearly'/ ! weights  ! rotation ! land/sea mask !
 !              !              !  (if <0  months)  !   name    !   (logical)  !  (T/F) ! 'monthly' ! filename ! pairing  ! filename      !
-   sn_patm     = 'presatm'    ,     -1.           , 'patm'    ,  .true.      , .true. , 'yearly'  , ''       , ''       , ''
+   sn_patm     = 'presatm.orca2'    ,     24.           , 'presatm'    ,  .true.      , .true. , 'yearly'  , ''       , ''       , ''
    sn_atmco2   = 'presatmco2' ,     -1.           , 'xco2'    ,  .true.      , .true. , 'yearly'  , ''       , ''       , ''
    cn_dir      = './'     !  root directory for the location of the dynamical files
 !

doc/namelists/nampisbc

@@ -14,9 +14,9 @@
    sedfeinput  =  2.e-9    ! Coastal release of Iron
    distcoast   =  5.e3     ! Distance off the coast for Iron from sediments
    mfrac       =  0.035    ! Fe mineral fraction of dust
-   wdust       =  2.0      ! Dust sinking speed 
+   wdust       =  2.0      ! Dust sinking speed
    icefeinput  =  15.e-9   ! Iron concentration in sea ice
-   hratio      =  1.e+7    ! Fe to 3He ratio assumed for vent iron supply 
+   hratio      =  1.e+7    ! Fe to 3He ratio assumed for vent iron supply
 !                          ! ln_ligand
-   lgw_rath    =  0.5      ! Weak ligand ratio from sed hydro sources 
+   lgw_rath    =  0.2      ! Weak ligand ratio from sed hydro sources
 /

doc/namelists/nampisbio

 !-----------------------------------------------------------------------
 &nampisbio     !   biological parameters
 !-----------------------------------------------------------------------
-   nrdttrc    =  1        ! time step frequency for biology
-   wsbio      =  2.       ! POC sinking speed
-   xkmort     =  2.E-7    ! half saturation constant for mortality
-   ferat3     =  10.E-6   ! Fe/C in zooplankton 
-   wsbio2     =  50.      ! Big particles sinking speed
-   wsbio2max  =  50.      ! Big particles maximum sinking speed
-   wsbio2scale =  5000.    ! Big particles length scale of sinking
+   nrdttrc     =  1       ! time step frequency for biology
+   wsbio       =  2.      ! POC sinking speed
+   xkmort      =  1.E-7   ! half saturation constant for mortality
+   feratz      =  10.E-6  ! Fe/C in zooplankton 
+   feratm      =  15.E-6  ! Fe/C in mesozooplankton
+   wsbio2      =  50.     ! Big particles sinking speed
+   wsbio2max   =  50.     ! Big particles maximum sinking speed
+   wsbio2scale =  5000.   ! Big particles length scale of sinking
 !                         !  ln_ligand enabled
-   ldocp      =  1.E-4    ! Phyto ligand production per unit doc 
-   ldocz      =  1.E-4    ! Zoo ligand production per unit doc 
-   lthet      =  1.0      ! Proportional loss of ligands due to Fe uptake 
+   ldocp       =  1.E-4   ! Phyto ligand production per unit doc 
+   ldocz       =  1.E-4   ! Zoo ligand production per unit doc 
+   lthet       =  1.0     ! Proportional loss of ligands due to Fe uptake 
 !                         !  ln_p5z enabled
-   no3rat3    =  0.182    ! N/C ratio in zooplankton
-   po4rat3    =  0.0094   ! P/C ratio in zooplankton
+   no3rat3     =  0.151   ! N/C ratio in zooplankton
+   po4rat3     =  0.00943 ! P/C ratio in zooplankton
 /

doc/namelists/nampiscal

 !-----------------------------------------------------------------------
 &nampiscal     !   parameters for Calcite chemistry
 !-----------------------------------------------------------------------
-   kdca       =  6.       ! calcite dissolution rate constant (1/time)
-   nca        =  1.       ! order of dissolution reaction (dimensionless)
+   kdca       =  100.     ! calcite dissolution rate constant (1/time)
+   nca        =  4.7      ! order of dissolution reaction (dimensionless)
 /

doc/namelists/nampisfer

 !-----------------------------------------------------------------------
 &nampisfer     !   parameters for iron chemistry
 !-----------------------------------------------------------------------
-   ln_ligvar =  .false.    ! variable ligand concentration
-   xlam1     =  0.005     ! scavenging rate of Iron
-   xlamdust  =  150.0     ! Scavenging rate of dust
-   ligand    =  0.7E-9    ! Ligands concentration 
+   ln_ligvar =  .false.   ! variable ligand concentration
+   xlam1     =  0.02      ! scavenging rate of Iron by biogenic particles
+   xlamdust  =  150.0     ! Scavenging rate of Iron by dust
+   ligand    =  1E-9     ! Ligands concentration 
    kfep      =  0.01      ! Nanoparticle formation rate constant
+   scaveff   =  1.0       ! Fraction of scavenged Fe that goes to POFe
 /

doc/namelists/nampislig

 !-----------------------------------------------------------------------
 &nampislig     !   Namelist parameters for ligands, nampislig
 !-----------------------------------------------------------------------
-   rlgw        =  100.     ! Lifetime (years) of weak ligands
+   rlgw        =  300.     ! Lifetime (years) of weak ligands
    rlig        =  1.E-4    ! Remin ligand production per unit C
-   prlgw       =  1.E-4    ! Photolysis of weak ligand
+   prlgw       =  3.E-4    ! Photolysis of weak ligand
    rlgs        =  1.       ! Lifetime (years) of strong ligands
+   xklig       =  1.E-9    ! 1/2 saturation constant of photolysis
 /

doc/namelists/nampismod

@@ -2,8 +2,8 @@
 &nampismod     !  Model used 
 !-----------------------------------------------------------------------
   ln_p2z    = .false.        !  LOBSTER model used
-  ln_p4z    = .true.         !  PISCES model used
-  ln_p5z    = .false.        !  PISCES QUOTA model used
+  ln_p4z    = .true.        !  PISCES model used
+  ln_p5z    = .false.         !  PISCES QUOTA model used
   ln_ligand = .false.        !  Enable  organic ligands
   ln_sediment = .false.      !  Enable sediment module
 /

doc/namelists/nampisopt

@@ -7,4 +7,5 @@
    cn_dir      = './'      !  root directory for the location of the dynamical files
    ln_varpar   =  .true.   ! boolean for PAR variable
    parlux      =  0.43      ! Fraction of shortwave as PAR
+   ln_p4z_dcyc =  .false.  ! Diurnal cycle in PISCES
 / 

doc/namelists/nampispoc

 !-----------------------------------------------------------------------
 &nampispoc     !   parameters for organic particles
 !-----------------------------------------------------------------------
-   xremip    =  0.035     ! remineralisation rate of PON
+   xremip    =  0.035     ! remineralisation rate of POC
    jcpoc     =  15        ! Number of lability classes
    rshape    =  1.0       ! Shape of the gamma function
 !                         ! ln_p5z
-   xremipc   =  0.02      ! remineralisation rate of POC
-   xremipn   =  0.025     ! remineralisation rate of PON
-   xremipp   =  0.03      ! remineralisation rate of POP
+   xremipc   =  0.028     ! remineralisation rate of POC
+   xremipn   =  0.03      ! remineralisation rate of PON
+   xremipp   =  0.035     ! remineralisation rate of POP
 /

doc/namelists/nampisrem

 !-----------------------------------------------------------------------  
 &nampisrem     !   parameters for remineralization
 !-----------------------------------------------------------------------
-   xremik    =  0.3       ! remineralization rate of DOC
    nitrif    =  0.05      ! NH4 nitrification rate
    xsirem    =  0.003     ! remineralization rate of Si
    xsiremlab =  0.03      ! fast remineralization rate of Si
    xsilab    =  0.5       ! Fraction of labile biogenic silica
-   feratb    =  10.E-6    ! Fe/C quota in bacteria
-   xkferb    =  3E-10     ! Half-saturation constant for bacteria Fe/C
+   feratb    =  60.E-6    ! Fe/C quota in bacteria
+   xkferb    =  4E-10     ! Half-saturation constant for bacteria Fe/C
 !                         ! ln_p5z
-   xremikc   =  0.25      ! remineralization rate of DOC
-   xremikn   =  0.35      ! remineralization rate of DON
-   xremikp   =  0.4       ! remineralization rate of DOP
-!   feratb    =  20E-6     ! Bacterial Fe/C ratio
-!   xkferb    =  3E-10     ! Half-saturation constant for bact. Fe/C
+   xremikc   =  0.4       ! remineralization rate of DOC
+   xremikn   =  0.4       ! remineralization rate of DON
+   xremikp   =  0.5       ! remineralization rate of DOP
 /

doc/namelists/nampissed

 !-----------------------------------------------------------------------
-&nampissed     !   parameters for sediments mobilization
+&nampissed     !   Namelist parameters for sediment mobilisation
 !-----------------------------------------------------------------------
-   nitrfix     =  1.e-7    ! Nitrogen fixation rate
-   diazolight  =  50.      ! Diazotrophs sensitivity to light (W/m2)
+   nitrfix     =  2.e-7    ! Nitrogen fixation rate
+   diazolight  =  30.      ! Diazotrophs sensitivity to light (W/m2)
    concfediaz  =  1.e-10   ! Diazotrophs half-saturation Cste for Iron
 /