doc/README.rst

-**************************
-Building the documentation
-**************************
-
-.. todo::
-
-
-
-:file:`latex`    : LaTeX sources and Latexmk configuration to build reference manuals with :file:`manual_build.sh`
-
-:file:`namelists`: Namelist blocks included in the documentation
-
-:file:`rst`      : |RST man|_ sources and Sphinx configuration to build this guide hereby with :file:`guide_build.sh`
-
-.. |RST man| replace:: reStructuredText (rst)
-
-.. warning::
-
-    Mention `svnignore` hidden file

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doc/badges/zenodo.1471689.svg

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-        <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,
-        Verdana,Geneva,sans-serif" font-size="11">
-            <text x="16" y="15" fill="#010101"
-            fill-opacity=".3">
-                DOI
-            </text>
-            <text x="16" y="14">
-                DOI
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doc/badges/zenodo.1471700.svg

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-            />
-            <path fill="url(#b)" d="M0 0h186v20H0z" />
-        </g>
-        <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,
-        Verdana,Geneva,sans-serif" font-size="11">
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-            fill-opacity=".3">
-                DOI
-            </text>
-            <text x="16" y="14">
-                DOI
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-            y="15" fill="#010101" fill-opacity=".3">
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doc/guide_build.sh

-#!/bin/sh
-
-## Avoid the use of shell builtin echo (for -e option)
-alias echo='/bin/echo -e'
-
-## Check dependancies
-##-------------------
-
-## Sphinx, BibTeX extension and "Read The Docs" theme
-if [ -n "$( ./tools/check_pkg.py sphinx sphinxcontrib.bibtex sphinx_rtd_theme )" ]; then
-    echo 'One of the Python dependencies is missing => QUIT'
-    exit 2
-fi
-
-cd rst
-
-echo "\t¤ Clean previous build"
-make clean
-echo
-
-echo "\t¤ Generation of the guide"
-make html > /dev/null
-echo
-
-echo "\t¤ End of building run"
-echo "Open ./rst/build/html/NEMO_guide.html"
-cd - > /dev/null
-
-exit 0

doc/latex/.gitignore

-*.aux
-*.bbl
-*.blg
-*.fdb*
-*.fls
-*.idx
-*.ilg
-*.ind
-*.lo*
-*.out
-*.pdf
-*.pyg
-*.tdo
-*.toc
-*.xdv
-cache*

doc/latex/DEPS

-academicons
-amsmath
-background
-bookmark
-caption
-catchfile
-draftwatermark
-enumitem
-etexcmds
-etoc
-etoolbox
-everypage
-fancyvrb
-fncychap
-fontawesome
-fontspec
-framed
-fvextra
-geometry
-graphics
-grep
-hyperref
-imakeidx
-infwarerr
-koma-script
-kvoptions
-kvsetkeys
-lastpage
-latex
-latexmk
-lineno
-ltxcmds
-mathtools
-minted
-natbib
-newfloat
-pgf
-psnfss
-subfiles
-tools
-upquote
-xetex
-xkeyval
-xstring
-zapfchan
-

doc/latex/HTML_htlatex.sh

-#!/bin/bash
-
-./inc/clean.sh
-./inc/build.sh
-
-mkdir -p html_htlatex
-cd tex_main
-htlatex NEMO_manual "NEMO_manual,2" "" "-d../html_htlatex/" "-shell-escape"
-cd -
-
-exit 0

doc/latex/HTML_latex2html.sh

-#!/bin/bash
-
-#./inc/clean.sh
-#./inc/build.sh
-
-sed -i -e 's#utf8#latin1#'                                 \
-       -e 's#\[outputdir=../build\]{minted}#\[\]{minted}#' \
-       -e '/graphicspath/ s#{../#{../../#g'                \
-          global/packages.tex
-
-cd ./NEMO/main
-sed -i -e 's#\\documentclass#%\\documentclass#' -e '/{document}/ s#^#%#'   ../subfiles/*.tex
-sed -i    's#\\subfile{#\\input{#'                                         chapters.tex appendices.tex
-
-#latex2html                                   -noimages -local_icons -no_footnode -split 4 -link 2 -dir ../html_LaTeX2HTML $*	NEMO_manual
-latex2html -debug -noreuse -init_file ../../l2hconf.pm -local_icons                               -dir ../build/html               NEMO_manual
-
-sed -i -e 's#%\\documentclass#\\documentclass#' -e '/{document}/ s#^%##'   ../subfiles/*.tex
-sed -i    's#\\input{#\\subfile{#'                                         chapters.tex appendices.tex
-cd -
-
-sed -i -e 's#latin1#utf8#'                                 \
-       -e 's#\[\]{minted}#\[outputdir=../build\]{minted}#' \
-       -e '/graphicspath/ s#{../../#{../#g'                \
-	  global/packages.tex
-
-exit 0