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  • nemo/nemo
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cfgs/AGRIF_DEMO/EXPREF/file_def_nemo-oce.xml
View file @ 5bc9e5ca
......@@ -34,6 +34,8 @@
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="utau" name="tauuo" />
<field field_ref="vtau" name="tauvo" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
<!-- ice and snow -->
......@@ -44,7 +46,6 @@
<field field_ref="e3u" />
<field field_ref="ssu" name="uos" />
<field field_ref="uoce" name="uo" operation="instant" freq_op="5d" > @uoce_e3u / @e3u </field>
<field field_ref="utau" name="tauuo" />
<field field_ref="uocetr_eff" name="uocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="u_masstr" name="vozomatr" />
......@@ -56,7 +57,6 @@
<field field_ref="e3v" />
<field field_ref="ssv" name="vos" />
<field field_ref="voce" name="vo" operation="instant" freq_op="5d" > @voce_e3v / @e3v </field>
<field field_ref="vtau" name="tauvo" />
<field field_ref="vocetr_eff" name="vocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="v_masstr" name="vomematr" />
......
cfgs/AMM12/EXPREF/file_def_nemo-oce.xml
View file @ 5bc9e5ca
......@@ -100,6 +100,8 @@
<field field_ref="qsr" name="rsntds" />
<field field_ref="qt" name="tohfls" />
<field field_ref="taum" />
<field field_ref="utau" name="tauuo" />
<field field_ref="vtau" name="tauvo" />
<field field_ref="mldkz5" />
<field field_ref="mldr10_1" />
</file>
......@@ -107,13 +109,11 @@
<file id="file5" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="uoce" name="uo" />
<field field_ref="ssu" name="uos" />
<field field_ref="utau" name="tauuo" />
</file>
<file id="file6" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="voce" name="vo" />
<field field_ref="ssv" name="vos" />
<field field_ref="vtau" name="tauvo" />
</file>
<file id="file7" name_suffix="_grid_W" description="ocean W grid variables" >
......
cfgs/GYRE_PISCES/EXPREF/file_def_nemo.xml
View file @ 5bc9e5ca
......@@ -32,16 +32,16 @@
<field field_ref="qt" name="sohefldo" />
<field field_ref="mldr10_1" name="somxl010" />
<field field_ref="mldkz5" name="somixhgt" />
<field field_ref="utau" name="sozotaux" />
<field field_ref="vtau" name="sometauy" />
</file>
<file id="file2" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="uoce" name="vozocrtx" />
<field field_ref="utau" name="sozotaux" />
</file>
<file id="file3" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="voce" name="vomecrty" />
<field field_ref="vtau" name="sometauy" />
</file>
<file id="file4" name_suffix="_grid_W" description="ocean W grid variables" >
......
cfgs/ORCA2_ICE_ABL/EXPREF/file_def_nemo-oce.xml
View file @ 5bc9e5ca
......@@ -30,6 +30,8 @@
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="utau" name="tauuo" />
<field field_ref="vtau" name="tauvo" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
<!-- ice and snow -->
......@@ -40,14 +42,12 @@
<field field_ref="e3u" />
<field field_ref="ssu" name="uos" />
<field field_ref="uoce" name="uo" />
<field field_ref="utau" name="tauuo" />
</file>
<file id="file13" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="e3v" />
<field field_ref="ssv" name="vos" />
<field field_ref="voce" name="vo" />
<field field_ref="vtau" name="tauvo" />
</file>
<file id="file14" name_suffix="_grid_ABL" description="ABL grid variables" >
......
cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-oce.xml
View file @ 5bc9e5ca
......@@ -34,6 +34,8 @@
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="utau" name="tauuo" />
<field field_ref="vtau" name="tauvo" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
<!-- ice and snow -->
......@@ -44,7 +46,6 @@
<field field_ref="e3u" />
<field field_ref="ssu" name="uos" />
<field field_ref="uoce" name="uo" operation="instant" freq_op="5d" > @uoce_e3u / @e3u </field>
<field field_ref="utau" name="tauuo" />
<field field_ref="uocetr_eff" name="uocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="u_masstr" name="vozomatr" />
......@@ -56,7 +57,6 @@
<field field_ref="e3v" />
<field field_ref="ssv" name="vos" />
<field field_ref="voce" name="vo" operation="instant" freq_op="5d" > @voce_e3v / @e3v </field>
<field field_ref="vtau" name="tauvo" />
<field field_ref="vocetr_eff" name="vocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="v_masstr" name="vomematr" />
......
cfgs/ORCA2_OFF_TRC/EXPREF/file_def_nemo-innerttrc.xml
View file @ 5bc9e5ca
......@@ -36,12 +36,23 @@
<field field_ref="ssh" name="zos" />
</file>
<file id="file1" name_suffix="_trc" description="passive tracers variables" >
<file id="file2" name_suffix="_trc" description="passive tracers variables" >
<field field_ref="Age" name="Age" operation="average" freq_op="1y" > @Age_e3t / @e3t </field>
<field field_ref="CFC11" name="CFC11" operation="average" freq_op="1y" > @CFC11_e3t / @e3t </field>
<field field_ref="CFC12" name="CFC12" operation="average" freq_op="1y" > @CFC12_e3t / @e3t </field>
<field field_ref="SF6" name="SF6" operation="average" freq_op="1y" > @SF6_e3t / @e3t </field>
<field field_ref="RC14" name="RC14" operation="average" freq_op="1y" > @RC14_e3t / @e3t </field>
<field field_ref="RC14" name="RC14" operation="average" freq_op="1y" > @RC14_e3t / @e3t </field>
<field field_ref="qtr_CFC11" />
<field field_ref="qint_CFC11" />
<field field_ref="qtr_CFC12" />
<field field_ref="qint_CFC12" />
<field field_ref="qtr_SF6" />
<field field_ref="qint_SF6" />
<field field_ref="qtr_c14" />
<field field_ref="qint_c14" />
<field field_ref="DeltaC14" />
<field field_ref="C14Age" />
<field field_ref="RAge" />
</file>
</file_group>
......
cfgs/ORCA2_SAS_ICE/EXPREF/file_def_nemo-oce.xml
View file @ 5bc9e5ca
......@@ -34,6 +34,8 @@
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="utau" name="tauuo" />
<field field_ref="vtau" name="tauvo" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
<!-- ice and snow -->
......@@ -44,7 +46,6 @@
<field field_ref="e3u" />
<field field_ref="ssu" name="uos" />
<field field_ref="uoce" name="uo" operation="instant" freq_op="5d" > @uoce_e3u / @e3u </field>
<field field_ref="utau" name="tauuo" />
<field field_ref="uocetr_eff" name="uocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="u_masstr" name="vozomatr" />
......@@ -56,7 +57,6 @@
<field field_ref="e3v" />
<field field_ref="ssv" name="vos" />
<field field_ref="voce" name="vo" operation="instant" freq_op="5d" > @voce_e3v / @e3v </field>
<field field_ref="vtau" name="tauvo" />
<field field_ref="vocetr_eff" name="vocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="v_masstr" name="vomematr" />
......
cfgs/SHARED/field_def_nemo-ice.xml
View file @ 5bc9e5ca
......@@ -18,7 +18,7 @@
<field_group id="SBC" > <!-- time step automaticaly defined based on nn_fsbc -->
<!-- 2D variables -->
<field_group id="SBC_2D" grid_ref="grid_T_2D" >
<field_group id="SBC_2D" grid_ref="grid_T_2D_inner" >
<!-- =================== -->
<!-- standard ice fields -->
......@@ -311,7 +311,7 @@
</field_group> <!-- SBC_2D -->
<!-- categories -->
<field_group id="SBC_3D" grid_ref="grid_T_ncatice" >
<field_group id="SBC_3D" grid_ref="grid_T_ncatice_inner" >
<!-- standard ice fields -->
<field id="iceconc_cat" long_name="Sea-ice concentration per category" unit="" />
......@@ -386,7 +386,7 @@
-->
<!-- output variables for my configuration (example) -->
<field_group id="myvarICE" grid_ref="grid_T_2D" >
<field_group id="myvarICE" >
<!-- ice mask -->
<field field_ref="icemask" name="simsk" />
<field field_ref="icemask05" name="simsk05" />
......@@ -495,7 +495,7 @@
</field_group>
<field_group id="myvarICE_cat" grid_ref="grid_T_ncatice" >
<field_group id="myvarICE_cat" >
<!-- categories -->
<field field_ref="icemask_cat" name="simskcat"/>
......@@ -524,7 +524,7 @@
<field field_ref="ilbgvol_tot" name="ilbgvol_tot" />
</field_group>
<field_group id="ICE_budget" grid_ref="grid_T_2D" >
<field_group id="ICE_budget" >
<!-- general -->
<field field_ref="icemask" name="simsk" />
<field field_ref="iceconc" name="siconc" />
......@@ -579,7 +579,7 @@
</field_group>
<!-- SIMIP daily fields -->
<field_group id="SIday_fields" grid_ref="grid_T_2D" >
<field_group id="SIday_fields" >
<field field_ref="icepres" name="sitimefrac" />
<field field_ref="iceconc_pct" name="siconc" />
<field field_ref="icethic_cmip" name="sithick" />
......@@ -591,7 +591,7 @@
</field_group>
<!-- SIMIP monthly fields -->
<field_group id="SImon_fields" grid_ref="grid_T_2D" >
<field_group id="SImon_fields" >
<!-- Sea-ice state variables -->
<field field_ref="icepres" name="sitimefrac" />
<field field_ref="iceconc_pct" name="siconc" />
......
cfgs/SHARED/field_def_nemo-innerttrc.xml
View file @ 5bc9e5ca
......@@ -16,7 +16,7 @@
-->
<field_group id="inerttrc" grid_ref="grid_T_2D">
<field_group id="inerttrc" grid_ref="grid_T_2D_inner">
<!-- CFC11 : variables available with ln_cfc11 -->
<field id="CFC11" long_name="Chlorofluoro carbon11 Concentration" unit="umol/m3" grid_ref="grid_T_3D" />
......@@ -39,8 +39,8 @@
<!-- C14 : variables available with ln_c14 -->
<field id="RC14" long_name="Radiocarbon ratio" unit="-" grid_ref="grid_T_3D" />
<field id="RC14_e3t" long_name="RC14 * e3t" unit="m" grid_ref="grid_T_3D" > RC14 * e3t </field >
<field id="DeltaC14" long_name="Delta C14" unit="permil" grid_ref="grid_T_3D" />
<field id="C14Age" long_name="Radiocarbon age" unit="yr" grid_ref="grid_T_3D" />
<field id="DeltaC14" long_name="Delta C14" unit="permil" grid_ref="grid_T_3D_inner" />
<field id="C14Age" long_name="Radiocarbon age" unit="yr" grid_ref="grid_T_3D_inner" />
<field id="RAge" long_name="Reservoir Age" unit="yr" />
<field id="qtr_c14" long_name="Air-sea flux of C14" unit="1/m2/s" />
<field id="qint_c14" long_name="Cumulative air-sea flux of C14" unit="1/m2" />
......@@ -52,7 +52,7 @@
<!-- AGE : variables available with ln_age -->
<field id="Age" long_name="Sea water age since surface contact" unit="yr" grid_ref="grid_T_3D" />
<field id="Age_e3t" long_name="Age * e3t" unit="yr * m" grid_ref="grid_T_3D" > Age * e3t </field >
<field id="Age_e3t" long_name="Age * e3t" unit="yr * m" grid_ref="grid_T_3D" > Age * e3t </field >
</field_group>
......
cfgs/SHARED/field_def_nemo-oce.xml
View file @ 5bc9e5ca
......@@ -25,7 +25,7 @@ that are available in the tidal-forcing implementation (see
-->
<!-- Time -->
<field id="diamlr_time" grid_ref="diamlr_grid_T_2D" prec="8" />
<field id="diamlr_time" grid_ref="diamlr_grid_T_2D_inner" prec="8" />
<!-- Regressors for tidal harmonic analysis -->
<field id="diamlr_r001" field_ref="diamlr_time" expr="sin( __TDE_M2_omega__ * diamlr_time )" enabled=".TRUE." comment="harmonic:sin:M2" />
......@@ -172,10 +172,10 @@ that are available in the tidal-forcing implementation (see
<field id="wetdep" long_name="wet depth" standard_name="wet_depth" unit="m" />
<field id="sshmax" long_name="max of sea surface height" field_ref="ssh" operation="maximum" />
<field id="mldkz5" long_name="Turbocline depth (Kz = 5e-4)" standard_name="ocean_mixed_layer_thickness_defined_by_vertical_tracer_diffusivity" unit="m" />
<field id="mldr10_1" long_name="Mixed Layer Depth (dsigma = 0.01 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" />
<field id="mldr10_1max" long_name="Max of Mixed Layer Depth (dsigma = 0.01 wrt 10m)" field_ref="mldr10_1" operation="maximum" />
<field id="mldr10_1min" long_name="Min of Mixed Layer Depth (dsigma = 0.01 wrt 10m)" field_ref="mldr10_1" operation="minimum" />
<field id="mldkz5" long_name="Turbocline depth (Kz = 5e-4)" standard_name="ocean_mixed_layer_thickness_defined_by_vertical_tracer_diffusivity" unit="m" grid_ref="grid_T_2D_inner" />
<field id="mldr10_1" long_name="Mixed Layer Depth (dsigma = 0.01 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" grid_ref="grid_T_2D_inner" />
<field id="mldr10_1max" long_name="Max of Mixed Layer Depth (dsigma = 0.01 wrt 10m)" field_ref="mldr10_1" operation="maximum" grid_ref="grid_T_2D_inner" />
<field id="mldr10_1min" long_name="Min of Mixed Layer Depth (dsigma = 0.01 wrt 10m)" field_ref="mldr10_1" operation="minimum" grid_ref="grid_T_2D_inner" />
<field id="heatc" long_name="Heat content vertically integrated" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" grid_ref="grid_T_2D_inner" />
<field id="saltc" long_name="Salt content vertically integrated" unit="PSU*kg/m2" grid_ref="grid_T_2D_inner" />
<field id="salt2c" long_name="square of Salt content vertically integrated" unit="PSU2*kg/m2" grid_ref="grid_T_2D_inner" />
......@@ -199,22 +199,22 @@ that are available in the tidal-forcing implementation (see
<field id="wi_cff" long_name="Fraction of implicit vertical velocity" unit="#" grid_ref="grid_T_3D" />
<!-- next variables available with key_diahth -->
<field id="mlddzt" long_name="Thermocline Depth (depth of max dT/dz)" standard_name="depth_at_maximum_upward_derivative_of_sea_water_potential_temperature" unit="m" />
<field id="mldr10_3" long_name="Mixed Layer Depth (dsigma = 0.03 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" />
<field id="mldr0_1" long_name="Mixed Layer Depth (dsigma = 0.01 wrt sfc)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" />
<field id="mldr0_3" long_name="Mixed Layer Depth (dsigma = 0.03 wrt sfc)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" />
<field id="mld_dt02" long_name="Mixed Layer Depth (|dT| = 0.2 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_temperature" unit="m" />
<field id="topthdep" long_name="Top of Thermocline Depth (dT = -0.2 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_temperature" unit="m" />
<field id="pycndep" long_name="Pycnocline Depth (dsigma[dT=-0.2] wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" />
<field id="BLT" long_name="Barrier Layer Thickness" unit="m" > topthdep - pycndep </field>
<field id="tinv" long_name="Max of vertical invertion of temperature" unit="degC" />
<field id="depti" long_name="Depth of max. vert. inv. of temperature" unit="m" />
<field id="20d" long_name="Depth of 20C isotherm" standard_name="depth_of_isosurface_of_sea_water_potential_temperature" unit="m" axis_ref="iax_20C" />
<field id="26d" long_name="Depth of 26C isotherm" standard_name="depth_of_isosurface_of_sea_water_potential_temperature" unit="m" axis_ref="iax_26C" />
<field id="28d" long_name="Depth of 28C isotherm" standard_name="depth_of_isosurface_of_sea_water_potential_temperature" unit="m" axis_ref="iax_28C" />
<field id="hc300" long_name="Heat content 0-300m" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" />
<field id="hc700" long_name="Heat content 0-700m" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" />
<field id="hc2000" long_name="Heat content 0-2000m" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" />
<field id="mlddzt" long_name="Thermocline Depth (depth of max dT/dz)" standard_name="depth_at_maximum_upward_derivative_of_sea_water_potential_temperature" unit="m" grid_ref="grid_T_2D_inner" />
<field id="mldr10_3" long_name="Mixed Layer Depth (dsigma = 0.03 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" grid_ref="grid_T_2D_inner" />
<field id="mldr0_1" long_name="Mixed Layer Depth (dsigma = 0.01 wrt sfc)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" grid_ref="grid_T_2D_inner" />
<field id="mldr0_3" long_name="Mixed Layer Depth (dsigma = 0.03 wrt sfc)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" grid_ref="grid_T_2D_inner" />
<field id="mld_dt02" long_name="Mixed Layer Depth (|dT| = 0.2 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_temperature" unit="m" grid_ref="grid_T_2D_inner" />
<field id="topthdep" long_name="Top of Thermocline Depth (dT = -0.2 wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_temperature" unit="m" grid_ref="grid_T_2D_inner" />
<field id="pycndep" long_name="Pycnocline Depth (dsigma[dT=-0.2] wrt 10m)" standard_name="ocean_mixed_layer_thickness_defined_by_sigma_theta" unit="m" grid_ref="grid_T_2D_inner" />
<field id="BLT" long_name="Barrier Layer Thickness" unit="m" grid_ref="grid_T_2D_inner" > topthdep - pycndep </field>
<field id="tinv" long_name="Max of vertical invertion of temperature" unit="degC" grid_ref="grid_T_2D_inner" />
<field id="depti" long_name="Depth of max. vert. inv. of temperature" unit="m" grid_ref="grid_T_2D_inner" />
<field id="20d" long_name="Depth of 20C isotherm" standard_name="depth_of_isosurface_of_sea_water_potential_temperature" unit="m" grid_ref="grid_T_2D_inner" axis_ref="iax_20C" />
<field id="26d" long_name="Depth of 26C isotherm" standard_name="depth_of_isosurface_of_sea_water_potential_temperature" unit="m" grid_ref="grid_T_2D_inner" axis_ref="iax_26C" />
<field id="28d" long_name="Depth of 28C isotherm" standard_name="depth_of_isosurface_of_sea_water_potential_temperature" unit="m" grid_ref="grid_T_2D_inner" axis_ref="iax_28C" />
<field id="hc300" long_name="Heat content 0-300m" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" grid_ref="grid_T_2D_inner" />
<field id="hc700" long_name="Heat content 0-700m" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" grid_ref="grid_T_2D_inner" />
<field id="hc2000" long_name="Heat content 0-2000m" standard_name="integral_of_sea_water_potential_temperature_wrt_depth_expressed_as_heat_content" unit="J/m2" grid_ref="grid_T_2D_inner" />
<!-- variables available with diaar5 -->
<field id="botpres" long_name="Sea Water Pressure at Sea Floor" standard_name="sea_water_pressure_at_sea_floor" unit="dbar" />
......@@ -410,7 +410,7 @@ that are available in the tidal-forcing implementation (see
<!-- SBC -->
<field_group id="SBC" > <!-- time step automaticaly defined based on nn_fsbc -->
<field_group id="SBC_2D" grid_ref="grid_T_2D" >
<field_group id="SBC_2D" grid_ref="grid_T_2D_inner" >
<field id="empmr" long_name="Net Upward Water Flux" standard_name="water_flux_out_of_sea_ice_and_sea_water" unit="kg/m2/s" />
<field id="empbmr" long_name="Net Upward Water Flux at pre. tstep" standard_name="water_flux_out_of_sea_ice_and_sea_water" unit="kg/m2/s" />
......@@ -423,18 +423,20 @@ that are available in the tidal-forcing implementation (see
<field id="precip" long_name="Total precipitation" standard_name="precipitation_flux" unit="kg/m2/s" />
<field id="wclosea" long_name="closed sea empmr correction" standard_name="closea_empmr" unit="kg/m2/s" />
<field id="qt" long_name="Net Downward Heat Flux" standard_name="surface_downward_heat_flux_in_sea_water" unit="W/m2" />
<field id="qns" long_name="non solar Downward Heat Flux" unit="W/m2" />
<field id="qsr" long_name="Shortwave Radiation" standard_name="net_downward_shortwave_flux_at_sea_water_surface" unit="W/m2" />
<field id="qsr3d" long_name="Shortwave Radiation 3D distribution" standard_name="downwelling_shortwave_flux_in_sea_water" unit="W/m2" grid_ref="grid_T_3D" />
<field id="qrp" long_name="Surface Heat Flux: Damping" standard_name="heat_flux_into_sea_water_due_to_newtonian_relaxation" unit="W/m2" />
<field id="qt" long_name="Net Downward Heat Flux" standard_name="surface_downward_heat_flux_in_sea_water" unit="W/m2" />
<field id="qns" long_name="non solar Downward Heat Flux" unit="W/m2" />
<field id="qsr" long_name="Shortwave Radiation" standard_name="net_downward_shortwave_flux_at_sea_water_surface" unit="W/m2" />
<field id="qsr3d" long_name="Shortwave Radiation 3D distribution" standard_name="downwelling_shortwave_flux_in_sea_water" unit="W/m2" grid_ref="grid_T_3D" />
<field id="qrp" long_name="Surface Heat Flux: Damping" standard_name="heat_flux_into_sea_water_due_to_newtonian_relaxation" unit="W/m2" />
<field id="qclosea" long_name="closed sea heat content flux" standard_name="closea_heat_content_downward_flux" unit="W/m2" />
<field id="erp" long_name="Surface Water Flux: Damping" standard_name="water_flux_out_of_sea_water_due_to_newtonian_relaxation" unit="kg/m2/s" />
<field id="taum" long_name="wind stress module" standard_name="magnitude_of_surface_downward_stress" unit="N/m2" />
<field id="wspd" long_name="wind speed module" standard_name="wind_speed" unit="m/s" />
<field id="erp" long_name="Surface Water Flux: Damping" standard_name="water_flux_out_of_sea_water_due_to_newtonian_relaxation" unit="kg/m2/s" />
<field id="taum" long_name="wind stress module" standard_name="magnitude_of_surface_downward_stress" unit="N/m2" />
<field id="wspd" long_name="wind speed module" standard_name="wind_speed" unit="m/s" />
<field id="utau" long_name="Wind Stress along i-axis" standard_name="surface_downward_x_stress" unit="N/m2" />
<field id="vtau" long_name="Wind Stress along j-axis" standard_name="surface_downward_y_stress" unit="N/m2" />
<!-- * variable relative to atmospheric pressure forcing : available with ln_apr_dyn -->
<field id="ssh_ib" long_name="Inverse barometer sea surface height" standard_name="sea_surface_height_correction_due_to_air_pressure_at_low_frequency" unit="m" />
<field id="ssh_ib" long_name="Inverse barometer sea surface height" standard_name="sea_surface_height_correction_due_to_air_pressure_at_low_frequency" unit="m" grid_ref="grid_T_2D" />
<!-- *_oce variables available with ln_blk_clio or ln_blk_core -->
<field id="rho_air" long_name="Air density at 10m above sea surface" standard_name="rho_air_10m" unit="kg/m3" />
......@@ -471,9 +473,9 @@ that are available in the tidal-forcing implementation (see
<field id="snow_ai_cea" long_name="Snow over sea-ice (cell average)" standard_name="snowfall_flux" unit="kg/m2/s" />
<field id="subl_ai_cea" long_name="Sublimation over sea-ice (cell average)" standard_name="surface_snow_and_ice_sublimation_flux" unit="kg/m2/s" />
<field id="icealb_cea" long_name="Ice albedo (cell average)" standard_name="sea_ice_albedo" unit="1" />
<field id="calving_cea" long_name="Calving" standard_name="water_flux_into_sea_water_from_icebergs" unit="kg/m2/s" />
<field id="iceberg_cea" long_name="Iceberg" standard_name="water_flux_into_sea_water_from_icebergs" unit="kg/m2/s" />
<field id="iceshelf_cea" long_name="Iceshelf" standard_name="water_flux_into_sea_water_from_iceshelf" unit="kg/m2/s" />
<field id="calving_cea" long_name="Calving" standard_name="water_flux_into_sea_water_from_icebergs" unit="kg/m2/s" grid_ref="grid_T_2D" />
<field id="iceberg_cea" long_name="Iceberg" standard_name="water_flux_into_sea_water_from_icebergs" unit="kg/m2/s" grid_ref="grid_T_2D" />
<field id="iceshelf_cea" long_name="Iceshelf" standard_name="water_flux_into_sea_water_from_iceshelf" unit="kg/m2/s" grid_ref="grid_T_2D" />
<!-- available if key_oasis3 + conservative method -->
......@@ -510,7 +512,7 @@ that are available in the tidal-forcing implementation (see
<field id="vflx_fwb_cea" long_name="volume flux due to fwb" standard_name="volume_flux_due_to_fwb" unit="kg/m2/s" />
<!-- ice field (nn_ice=1) -->
<field id="ice_cover" long_name="Ice fraction" standard_name="sea_ice_area_fraction" unit="1" />
<field id="ice_cover" long_name="Ice fraction" standard_name="sea_ice_area_fraction" unit="1" grid_ref="grid_T_2D" />
<!-- dilution -->
<field id="emp_x_sst" long_name="Concentration/Dilution term on SST" unit="kg*degC/m2/s" />
......@@ -519,13 +521,13 @@ that are available in the tidal-forcing implementation (see
<field id="rnf_x_sss" long_name="Runoff term on SSS" unit="kg*1e-3/m2/s" />
<!-- sbcssm variables -->
<field id="sst_m" unit="degC" />
<field id="sss_m" unit="psu" />
<field id="ssu_m" unit="m/s" />
<field id="ssv_m" unit="m/s" />
<field id="ssh_m" unit="m" />
<field id="e3t_m" unit="m" />
<field id="frq_m" unit="-" />
<field id="sst_m" unit="degC" grid_ref="grid_T_2D" />
<field id="sss_m" unit="psu" grid_ref="grid_T_2D" />
<field id="ssu_m" unit="m/s" grid_ref="grid_T_2D" />
<field id="ssv_m" unit="m/s" grid_ref="grid_T_2D" />
<field id="ssh_m" unit="m" grid_ref="grid_T_2D" />
<field id="e3t_m" unit="m" grid_ref="grid_T_2D" />
<field id="frq_m" unit="-" grid_ref="grid_T_2D" />
</field_group>
......@@ -583,7 +585,6 @@ that are available in the tidal-forcing implementation (see
<field id="e2u" long_name="U-cell width in meridional direction" standard_name="cell_width" unit="m" />
<field id="e3u" long_name="U-cell thickness" standard_name="cell_thickness" unit="m" grid_ref="grid_U_3D" />
<field id="e3u_0" long_name="Initial U-cell thickness" standard_name="ref_cell_thickness" unit="m" grid_ref="grid_U_3D"/>
<field id="utau" long_name="Wind Stress along i-axis" standard_name="surface_downward_x_stress" unit="N/m2" />
<field id="uoce" long_name="ocean current along i-axis" standard_name="sea_water_x_velocity" unit="m/s" grid_ref="grid_U_3D" />
<field id="uoce_e3u" long_name="ocean current along i-axis (thickness weighted)" unit="m/s" grid_ref="grid_U_3D" > uoce * e3u </field>
<field id="uoce_e3u_vsum" long_name="ocean current along i-axis * e3u summed on the vertical" field_ref="uoce_e3u" unit="m3/s" grid_ref="grid_U_vsum"/>
......@@ -651,7 +652,6 @@ that are available in the tidal-forcing implementation (see
<field id="e3v" long_name="V-cell thickness" standard_name="cell_thickness" unit="m" grid_ref="grid_V_3D" />
<field id="e3v_0" long_name="Initial V-cell thickness" standard_name="ref_cell_thickness" unit="m" grid_ref="grid_V_3D" />
<field id="hv" long_name="water column height at V point" standard_name="water_column_height_V" unit="m" />
<field id="vtau" long_name="Wind Stress along j-axis" standard_name="surface_downward_y_stress" unit="N/m2" />
<field id="voce" long_name="ocean current along j-axis" standard_name="sea_water_y_velocity" unit="m/s" grid_ref="grid_V_3D" />
<field id="voce_e3v" long_name="ocean current along j-axis (thickness weighted)" unit="m/s" grid_ref="grid_V_3D" > voce * e3v </field>
<field id="ssv" long_name="ocean surface current along j-axis" unit="m/s" />
......@@ -718,16 +718,16 @@ that are available in the tidal-forcing implementation (see
<field id="weiv_heattr3d" long_name="ocean bolus heat transport" standard_name="ocean_heat_z_transport_due_to_bolus_advection" unit="W" />
<field id="weiv_salttr3d" long_name="ocean bolus salt transport" standard_name="ocean_salt_z_transport_due_to_bolus_advection" unit="kg" />
<field id="avt" long_name="vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" />
<field id="avt" long_name="vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" grid_ref="grid_W_3D_inner" />
<field id="avt_e3w" long_name="vertical heat diffusivity * e3w" unit="m3/s" > avt * e3w </field>
<field id="logavt" long_name="logarithm of vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" />
<field id="logavt" long_name="logarithm of vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" grid_ref="grid_W_3D_inner" />
<field id="avm" long_name="vertical eddy viscosity" standard_name="ocean_vertical_momentum_diffusivity" unit="m2/s" />
<field id="avm_e3w" long_name="vertical eddy viscosity * e3w" unit="m3/s" > avm * e3w </field>
<!-- avs: /= avt with ln_zdfddm=T -->
<field id="avs" long_name="salt vertical eddy diffusivity" standard_name="ocean_vertical_salt_diffusivity" unit="m2/s" />
<field id="avs" long_name="salt vertical eddy diffusivity" standard_name="ocean_vertical_salt_diffusivity" unit="m2/s" grid_ref="grid_W_3D_inner" />
<field id="avs_e3w" long_name="vertical salt diffusivity * e3w" unit="m3/s" > avs * e3w </field>
<field id="logavs" long_name="logarithm of salt vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" />
<field id="logavs" long_name="logarithm of salt vertical eddy diffusivity" standard_name="ocean_vertical_heat_diffusivity" unit="m2/s" grid_ref="grid_W_3D_inner" />
<!-- avt_evd and avm_evd: available with ln_zdfevd -->
<field id="avt_evd" long_name="convective enhancement of vertical diffusivity" standard_name="ocean_vertical_tracer_diffusivity_due_to_convection" unit="m2/s" />
......@@ -740,11 +740,11 @@ that are available in the tidal-forcing implementation (see
<!-- avt_tide: available with ln_zdfiwm=T -->
<field id="av_ratio" long_name="S over T diffusivity ratio" standard_name="salinity_over_temperature_diffusivity_ratio" unit="1" />
<field id="av_wave" long_name="internal wave-induced vertical diffusivity" standard_name="ocean_vertical_tracer_diffusivity_due_to_internal_waves" unit="m2/s" />
<field id="bflx_iwm" long_name="internal wave-induced buoyancy flux" standard_name="buoyancy_flux_due_to_internal_waves" unit="W/kg" />
<field id="pcmap_iwm" long_name="power consumed by wave-driven mixing" standard_name="vertically_integrated_power_consumption_by_wave_driven_mixing" unit="W/m2" grid_ref="grid_W_2D" />
<field id="emix_iwm" long_name="power density available for mixing" standard_name="power_available_for_mixing_from_breaking_internal_waves" unit="W/kg" />
<field id="av_ratio" long_name="S over T diffusivity ratio" standard_name="salinity_over_temperature_diffusivity_ratio" unit="1" grid_ref="grid_W_3D_inner" />
<field id="av_wave" long_name="internal wave-induced vertical diffusivity" standard_name="ocean_vertical_tracer_diffusivity_due_to_internal_waves" unit="m2/s" grid_ref="grid_W_3D_inner" />
<field id="bflx_iwm" long_name="internal wave-induced buoyancy flux" standard_name="buoyancy_flux_due_to_internal_waves" unit="W/kg" grid_ref="grid_W_3D_inner" />
<field id="pcmap_iwm" long_name="power consumed by wave-driven mixing" standard_name="vertically_integrated_power_consumption_by_wave_driven_mixing" unit="W/m2" grid_ref="grid_W_2D_inner" />
<field id="emix_iwm" long_name="power density available for mixing" standard_name="power_available_for_mixing_from_breaking_internal_waves" unit="W/kg" grid_ref="grid_W_3D_inner" />
<!-- variables available with WAVE (ln_wave=T) -->
<field id="wstokes" long_name="Stokes Drift vertical velocity" standard_name="upward_StokesDrift_velocity" unit="m/s" />
......@@ -757,11 +757,11 @@ that are available in the tidal-forcing implementation (see
<field id="bn2" long_name="squared Brunt-Vaisala frequency" unit="s-2" />
<!-- dissipation diagnostics (note: ediss_k is only available with tke scheme) -->
<field id="avt_k" long_name="vertical eddy diffusivity from closure schemes" standard_name="ocean_vertical_eddy_diffusivity" unit="m2/s" />
<field id="avm_k" long_name="vertical eddy viscosity from closure schemes" standard_name="ocean_vertical_eddy_viscosity" unit="m2/s" />
<field id="ediss_k" long_name="Kolmogorov energy dissipation (tke scheme)" standard_name="Kolmogorov_energy_dissipation" unit="W/kg" />
<field id="eshear_k" long_name="energy source from vertical shear" standard_name="energy_source_from_shear" unit="W/kg" />
<field id="estrat_k" long_name="energy sink from stratification" standard_name="energy_sink_from_stratification" unit="W/kg" />
<field id="avt_k" long_name="vertical eddy diffusivity from closure schemes" standard_name="ocean_vertical_eddy_diffusivity" unit="m2/s" grid_ref="grid_W_3D_inner" />
<field id="ediss_k" long_name="Kolmogorov energy dissipation (tke scheme)" standard_name="Kolmogorov_energy_dissipation" unit="W/kg" grid_ref="grid_W_3D_inner" />
<field id="eshear_k" long_name="energy source from vertical shear" standard_name="energy_source_from_shear" unit="W/kg" grid_ref="grid_W_3D_inner" />
<field id="estrat_k" long_name="energy sink from stratification" standard_name="energy_sink_from_stratification" unit="W/kg" grid_ref="grid_W_3D_inner" />
</field_group>
......@@ -1018,7 +1018,7 @@ that are available in the tidal-forcing implementation (see
</field_group>
<!-- Total trends calculated every time step-->
<field_group id="trendT" grid_ref="grid_T_3D">
<field_group id="trendT" grid_ref="grid_T_3D_inner">
<field id="ttrd_tot" long_name="temperature-trend: total model trend" unit="degC/s" />
<field id="strd_tot" long_name="salinity -trend: total model trend" unit="1e-3/s" />
<!-- Thickness weighted versions: -->
......@@ -1034,10 +1034,10 @@ that are available in the tidal-forcing implementation (see
<field id="ketrd_spg" long_name="ke-trend: surface pressure gradient" unit="W/s^3" />
<field id="ketrd_spgexp" long_name="ke-trend: surface pressure gradient (explicit)" unit="W/s^3" />
<field id="ketrd_spgflt" long_name="ke-trend: surface pressure gradient (filter)" unit="W/s^3" />
<field id="ssh_flt" long_name="filtered contribution to ssh (dynspg_flt)" unit="m" grid_ref="grid_T_2D" />
<field id="w0" long_name="surface vertical velocity" unit="m/s" grid_ref="grid_T_2D" />
<field id="pw0_exp" long_name="surface pressure flux due to ssh" unit="W/s^2" grid_ref="grid_T_2D" />
<field id="pw0_flt" long_name="surface pressure flux due to filtered ssh" unit="W/s^2" grid_ref="grid_T_2D" />
<field id="ssh_flt" long_name="filtered contribution to ssh (dynspg_flt)" unit="m" grid_ref="grid_T_2D_inner" />
<field id="w0" long_name="surface vertical velocity" unit="m/s" grid_ref="grid_T_2D_inner" />
<field id="pw0_exp" long_name="surface pressure flux due to ssh" unit="W/s^2" grid_ref="grid_T_2D_inner" />
<field id="pw0_flt" long_name="surface pressure flux due to filtered ssh" unit="W/s^2" grid_ref="grid_T_2D_inner" />
<field id="ketrd_keg" long_name="ke-trend: KE gradient or hor. adv." unit="W/s^3" />
<field id="ketrd_rvo" long_name="ke-trend: relative vorticity or metric term" unit="W/s^3" />
<field id="ketrd_pvo" long_name="ke-trend: planetary vorticity" unit="W/s^3" />
......@@ -1045,7 +1045,7 @@ that are available in the tidal-forcing implementation (see
<field id="ketrd_udx" long_name="ke-trend: U.dx[U]" unit="W/s^3" />
<field id="ketrd_ldf" long_name="ke-trend: lateral diffusion" unit="W/s^3" />
<field id="ketrd_zdf" long_name="ke-trend: vertical diffusion" unit="W/s^3" />
<field id="ketrd_tau" long_name="ke-trend: wind stress " unit="W/s^3" grid_ref="grid_T_2D" />
<field id="ketrd_tau" long_name="ke-trend: wind stress " unit="W/s^3" grid_ref="grid_T_2D_inner" />
<field id="ketrd_bfr" long_name="ke-trend: bottom friction (explicit)" unit="W/s^3" />
<field id="ketrd_bfri" long_name="ke-trend: bottom friction (implicit)" unit="W/s^3" />
<field id="ketrd_atf" long_name="ke-trend: asselin time filter trend" unit="W/s^3" />
......@@ -1062,7 +1062,7 @@ that are available in the tidal-forcing implementation (see
<field id="petrd_xad" long_name="pe-trend: i-advection" unit="W/m^3" />
<field id="petrd_yad" long_name="pe-trend: j-advection" unit="W/m^3" />
<field id="petrd_zad" long_name="pe-trend: k-advection" unit="W/m^3" />
<field id="petrd_sad" long_name="pe-trend: surface adv. (linssh true)" unit="W/m^3" grid_ref="grid_T_2D" />
<field id="petrd_sad" long_name="pe-trend: surface adv. (linssh true)" unit="W/m^3" grid_ref="grid_T_2D_inner" />
<field id="petrd_ldf" long_name="pe-trend: lateral diffusion" unit="W/m^3" />
<field id="petrd_zdf" long_name="pe-trend: vertical diffusion" unit="W/m^3" />
<field id="petrd_zdfp" long_name="pe-trend: pure vert. diffusion" unit="W/m^3" />
......@@ -1080,42 +1080,42 @@ that are available in the tidal-forcing implementation (see
<field_group id="trendU" grid_ref="grid_U_3D">
<!-- variables available with ln_dyn_trd -->
<field id="utrd_hpg" long_name="i-trend: hydrostatic pressure gradient" unit="m/s^2" />
<field id="utrd_spg" long_name="i-trend: surface pressure gradient" unit="m/s^2" />
<field id="utrd_spgexp" long_name="i-trend: surface pressure gradient (explicit)" unit="m/s^2" />
<field id="utrd_spgflt" long_name="i-trend: surface pressure gradient (filtered)" unit="m/s^2" />
<field id="utrd_keg" long_name="i-trend: KE gradient or hor. adv." unit="m/s^2" />
<field id="utrd_rvo" long_name="i-trend: relative vorticity or metric term" unit="m/s^2" />
<field id="utrd_pvo" long_name="i-trend: planetary vorticity" unit="m/s^2" />
<field id="utrd_zad" long_name="i-trend: vertical advection" unit="m/s^2" />
<field id="utrd_udx" long_name="i-trend: U.dx[U]" unit="m/s^2" />
<field id="utrd_ldf" long_name="i-trend: lateral diffusion" unit="m/s^2" />
<field id="utrd_zdf" long_name="i-trend: vertical diffusion" unit="m/s^2" />
<field id="utrd_tau" long_name="i-trend: wind stress " unit="m/s^2" grid_ref="grid_U_2D" />
<field id="utrd_bfr" long_name="i-trend: bottom friction (explicit)" unit="m/s^2" />
<field id="utrd_bfri" long_name="i-trend: bottom friction (implicit)" unit="m/s^2" />
<field id="utrd_tot" long_name="i-trend: total momentum trend before atf" unit="m/s^2" />
<field id="utrd_atf" long_name="i-trend: asselin time filter trend" unit="m/s^2" />
<field id="utrd_hpg" long_name="i-trend: hydrostatic pressure gradient" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_spg" long_name="i-trend: surface pressure gradient" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_spgexp" long_name="i-trend: surface pressure gradient (explicit)" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_spgflt" long_name="i-trend: surface pressure gradient (filtered)" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_keg" long_name="i-trend: KE gradient or hor. adv." unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_rvo" long_name="i-trend: relative vorticity or metric term" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_pvo" long_name="i-trend: planetary vorticity" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_zad" long_name="i-trend: vertical advection" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_udx" long_name="i-trend: U.dx[U]" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_ldf" long_name="i-trend: lateral diffusion" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_zdf" long_name="i-trend: vertical diffusion" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_tau" long_name="i-trend: wind stress " unit="m/s^2" grid_ref="grid_U_2D_inner" />
<field id="utrd_bfr" long_name="i-trend: bottom friction (explicit)" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_bfri" long_name="i-trend: bottom friction (implicit)" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_tot" long_name="i-trend: total momentum trend before atf" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="utrd_atf" long_name="i-trend: asselin time filter trend" unit="m/s^2" grid_ref="grid_T_3D_inner" />
</field_group>
<field_group id="trendV" grid_ref="grid_V_3D">
<!-- variables available with ln_dyn_trd -->
<field id="vtrd_hpg" long_name="j-trend: hydrostatic pressure gradient" unit="m/s^2" />
<field id="vtrd_spg" long_name="j-trend: surface pressure gradient" unit="m/s^2" />
<field id="vtrd_spgexp" long_name="j-trend: surface pressure gradient (explicit)" unit="m/s^2" />
<field id="vtrd_spgflt" long_name="j-trend: surface pressure gradient (filtered)" unit="m/s^2" />
<field id="vtrd_keg" long_name="j-trend: KE gradient or hor. adv." unit="m/s^2" />
<field id="vtrd_rvo" long_name="j-trend: relative vorticity or metric term" unit="m/s^2" />
<field id="vtrd_pvo" long_name="j-trend: planetary vorticity" unit="m/s^2" />
<field id="vtrd_zad" long_name="j-trend: vertical advection" unit="m/s^2" />
<field id="vtrd_vdy" long_name="i-trend: V.dx[V]" unit="m/s^2" />
<field id="vtrd_ldf" long_name="j-trend: lateral diffusion" unit="m/s^2" />
<field id="vtrd_zdf" long_name="j-trend: vertical diffusion" unit="m/s^2" />
<field id="vtrd_tau" long_name="j-trend: wind stress " unit="m/s^2" grid_ref="grid_V_2D" />
<field id="vtrd_bfr" long_name="j-trend: bottom friction (explicit)" unit="m/s^2" />
<field id="vtrd_bfri" long_name="j-trend: bottom friction (implicit)" unit="m/s^2" />
<field id="vtrd_tot" long_name="j-trend: total momentum trend before atf" unit="m/s^2" />
<field id="vtrd_atf" long_name="j-trend: asselin time filter trend" unit="m/s^2" />
<field id="vtrd_hpg" long_name="j-trend: hydrostatic pressure gradient" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_spg" long_name="j-trend: surface pressure gradient" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_spgexp" long_name="j-trend: surface pressure gradient (explicit)" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_spgflt" long_name="j-trend: surface pressure gradient (filtered)" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_keg" long_name="j-trend: KE gradient or hor. adv." unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_rvo" long_name="j-trend: relative vorticity or metric term" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_pvo" long_name="j-trend: planetary vorticity" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_zad" long_name="j-trend: vertical advection" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_vdy" long_name="i-trend: V.dx[V]" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_ldf" long_name="j-trend: lateral diffusion" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_zdf" long_name="j-trend: vertical diffusion" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_tau" long_name="j-trend: wind stress " unit="m/s^2" grid_ref="grid_V_2D_inner" />
<field id="vtrd_bfr" long_name="j-trend: bottom friction (explicit)" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_bfri" long_name="j-trend: bottom friction (implicit)" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_tot" long_name="j-trend: total momentum trend before atf" unit="m/s^2" grid_ref="grid_T_3D_inner" />
<field id="vtrd_atf" long_name="j-trend: asselin time filter trend" unit="m/s^2" grid_ref="grid_T_3D_inner" />
</field_group>
<!-- shared variables available with TOP interface -->
......@@ -1189,6 +1189,8 @@ that are available in the tidal-forcing implementation (see
<field field_ref="qsr" name="rsntds" long_name="surface_net_downward_shortwave_flux" />
<field field_ref="qt" name="tohfls" long_name="surface_net_downward_total_heat_flux" />
<field field_ref="taum" />
<field field_ref="utau" name="tauuo" long_name="surface_downward_x_stress" />
<field field_ref="vtau" name="tauvo" long_name="surface_downward_y_stress" />
<field field_ref="20d" />
<field field_ref="mldkz5" />
<field field_ref="mldr10_1" />
......@@ -1203,12 +1205,10 @@ that are available in the tidal-forcing implementation (see
<field_group id="groupU" >
<field field_ref="uoce" name="uo" long_name="sea_water_x_velocity" />
<field field_ref="utau" name="tauuo" long_name="surface_downward_x_stress" />
</field_group>
<field_group id="groupV" >
<field field_ref="voce" name="vo" long_name="sea_water_y_velocity" />
<field field_ref="vtau" name="tauvo" long_name="surface_downward_y_stress" />
</field_group>
<field_group id="groupW" >
......
cfgs/SHARED/field_def_nemo-pisces.xml
View file @ 5bc9e5ca
......@@ -172,113 +172,113 @@
<!-- PISCES additional diagnostics on T grid -->
<field_group id="diad_T" grid_ref="grid_T_2D">
<field id="PH" long_name="PH" unit="1" grid_ref="grid_T_3D" />
<field id="CO3" long_name="Bicarbonates" unit="mol/m3" grid_ref="grid_T_3D" />
<field id="CO3sat" long_name="CO3 saturation" unit="mol/m3" grid_ref="grid_T_3D" />
<field id="PAR" long_name="Photosynthetically Available Radiation" unit="W/m2" grid_ref="grid_T_3D" />
<field id="PPPHYN" long_name="Primary production of nanophyto" unit="molC/m3/s" grid_ref="grid_T_3D" />
<field id="PPPHYP" long_name="Primary production of picophyto" unit="molC/m3/s" grid_ref="grid_T_3D" />
<field id="PPPHYD" long_name="Primary production of diatoms" unit="molC/m3/s" grid_ref="grid_T_3D" />
<field id="PPNEWN" long_name="New Primary production of nanophyto" unit="molC/m3/s" grid_ref="grid_T_3D" />
<field id="PPNEWP" long_name="New Primary production of picophyto" unit="molC/m3/s" grid_ref="grid_T_3D" />
<field id="PPNEWD" long_name="New Primary production of diatoms" unit="molC/m3/s" grid_ref="grid_T_3D" />
<field id="PBSi" long_name="Primary production of Si diatoms" unit="molC/m3/s" grid_ref="grid_T_3D" />
<field id="PFeN" long_name="Primary production of nano iron" unit="molC/m3/s" grid_ref="grid_T_3D" />
<field id="PFeP" long_name="Primary production of pico iron" unit="molC/m3/s" grid_ref="grid_T_3D" />
<field id="PFeD" long_name="Primary production of diatoms iron" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="xfracal" long_name="Calcifying fraction" unit="1" grid_ref="grid_T_3D" />
<field id="PCAL" long_name="Calcite production" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="DCAL" long_name="Calcite dissolution" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="GRAZ1" long_name="Grazing by microzooplankton" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="GRAZ2" long_name="Grazing by mesozooplankton" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="REMIN" long_name="Oxic remineralization of OM" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="DENIT" long_name="Anoxic remineralization of OM" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="REMINP" long_name="Oxic remineralization rate of POC" unit="d-1" grid_ref="grid_T_3D" />
<field id="REMING" long_name="Oxic remineralization rate of GOC" unit="d-1" grid_ref="grid_T_3D" />
<field id="Nfix" long_name="Nitrogen fixation" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="Mumax" long_name="Maximum growth rate" unit="s-1" grid_ref="grid_T_3D" />
<field id="MuN" long_name="Realized growth rate for nanophyto" unit="s-1" grid_ref="grid_T_3D" />
<field id="MuP" long_name="Realized growth rate for picophyto" unit="s-1" grid_ref="grid_T_3D" />
<field id="MuD" long_name="Realized growth rate for diatomes" unit="s-1" grid_ref="grid_T_3D" />
<field id="MunetN" long_name="Net growth rate for nanophyto" unit="s-1" grid_ref="grid_T_3D" />
<field id="MunetP" long_name="Net growth rate for picophyto" unit="s-1" grid_ref="grid_T_3D" />
<field id="MunetD" long_name="Net growth rate for diatomes" unit="s-1" grid_ref="grid_T_3D" />
<field id="LNnut" long_name="Nutrient limitation term in Nanophyto" unit="" grid_ref="grid_T_3D" />
<field id="LPnut" long_name="Nutrient limitation term in Picophyto" unit="-" grid_ref="grid_T_3D" />
<field id="LDnut" long_name="Nutrient limitation term in Diatoms" unit="" grid_ref="grid_T_3D" />
<field id="LNFe" long_name="Iron limitation term in Nanophyto" unit="" grid_ref="grid_T_3D" />
<field id="LPFe" long_name="Iron limitation term in Picophyto" unit="-" grid_ref="grid_T_3D" />
<field id="LDFe" long_name="Iron limitation term in Diatoms" unit="" grid_ref="grid_T_3D" />
<field id="LNlight" long_name="Light limitation term in Nanophyto" unit="" grid_ref="grid_T_3D" />
<field id="LPlight" long_name="Light limitation term in Picophyto" unit="-" grid_ref="grid_T_3D" />
<field id="LDlight" long_name="Light limitation term in Diatoms" unit="" grid_ref="grid_T_3D" />
<field id="SIZEN" long_name="Mean relative size of nanophyto." unit="-" grid_ref="grid_T_3D" />
<field id="SIZEP" long_name="Mean relative size of picophyto." unit="-" grid_ref="grid_T_3D" />
<field id="SIZED" long_name="Mean relative size of diatoms" unit="-" grid_ref="grid_T_3D" />
<field id="RASSD" long_name="Size of the protein machinery (Diat.)" unit="-" grid_ref="grid_T_3D" />
<field id="RASSN" long_name="Size of the protein machinery (Nano.)" unit="-" grid_ref="grid_T_3D" />
<field id="RASSP" long_name="Size of the protein machinery (Pico.)" unit="-" grid_ref="grid_T_3D" />
<field id="Fe3" long_name="Iron III concentration" unit="nmol/m3" grid_ref="grid_T_3D" />
<field id="FeL1" long_name="Complexed Iron concentration with L1" unit="nmol/m3" grid_ref="grid_T_3D" />
<field id="TL1" long_name="Total L1 concentration" unit="nmol/m3" grid_ref="grid_T_3D" />
<field id="pdust" long_name="dust concentration" unit="g/m3" />
<field id="Totlig" long_name="Total ligand concentation" unit="nmol/m3" grid_ref="grid_T_3D" />
<field id="Biron" long_name="Bioavailable iron" unit="nmol/m3" grid_ref="grid_T_3D" />
<field id="Sdenit" long_name="Nitrate reduction in the sediments" unit="mol/m2/s" />
<field id="Ironice" long_name="Iron input/uptake due to sea ice" unit="mol/m2/s" />
<field id="SedCal" long_name="Calcite burial in the sediments" unit="molC/m2/s" />
<field id="SedSi" long_name="Silicon burial in the sediments" unit="molSi/m2/s" />
<field id="SedC" long_name="Organic C burial in the sediments" unit="molC/m2/s" />
<field id="HYDR" long_name="Iron input from hydrothemal vents" unit="mol/m2/s" grid_ref="grid_T_3D" />
<field id="EPC100" long_name="Export of carbon particles at 100 m" unit="mol/m2/s" />
<field id="EPFE100" long_name="Export of biogenic iron at 100 m" unit="mol/m2/s" />
<field id="EPSI100" long_name="Export of Silicate at 100 m" unit="mol/m2/s" />
<field id="EPCAL100" long_name="Export of Calcite at 100 m" unit="mol/m2/s" />
<field id="EXPC" long_name="Export of carbon" unit="mol/m2/s" grid_ref="grid_T_3D" />
<field id="EXPFE" long_name="Export of biogenic iron" unit="mol/m2/s" grid_ref="grid_T_3D" />
<field id="EXPSI" long_name="Export of Silicate" unit="mol/m2/s" grid_ref="grid_T_3D" />
<field id="EXPCAL" long_name="Export of Calcite" unit="mol/m2/s" grid_ref="grid_T_3D" />
<field id="Cflx" long_name="DIC flux" unit="mol/m2/s" />
<field id="Oflx" long_name="Oxygen flux" unit="mol/m2/s" />
<field id="Kg" long_name="Gas transfer" unit="mol/m2/s/uatm" />
<field id="Dpco2" long_name="Delta CO2" unit="uatm" />
<field id="pCO2sea" long_name="surface ocean pCO2" unit="uatm" />
<field id="Dpo2" long_name="Delta O2" unit="uatm" />
<field id="Heup" long_name="Euphotic layer depth" unit="m" />
<field id="AtmCo2" long_name="Atmospheric CO2 concentration" unit="ppm" />
<field id="Irondep" long_name="Iron deposition from dust" unit="mol/m2/s" />
<field id="Ironsed" long_name="Iron deposition from sediment" unit="mol/m2/s" grid_ref="grid_T_3D" />
<field id="FESCAV" long_name="Scavenging of Iron" unit="mmol-Fe/m3/s" grid_ref="grid_T_3D" />
<field id="FECOLL" long_name="Colloidal Pumping of FeL" unit="mmol-FeL/m3/s" grid_ref="grid_T_3D" />
<field id="LGWCOLL" long_name="Coagulation loss of ligands" unit="mmol-L/m3/s" grid_ref="grid_T_3D" />
<field id="REMINF" long_name="Oxic remineralization suppy of Fe" unit="mmol-Fe/m3/s" grid_ref="grid_T_3D" />
<field id="BACT" long_name="Bacterial Biomass" unit="mmol/m3" grid_ref="grid_T_3D" />
<field id="FEBACT" long_name="Bacterial uptake of Fe" unit="molFe/m3/s" grid_ref="grid_T_3D" />
<field id="FEPREC" long_name="Precipitation of Fe" unit="molFe/m3/s" grid_ref="grid_T_3D" />
<field id="LPRODR" long_name="OM remineralisation ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D" />
<field id="LPRODP" long_name="phytoplankton ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D" />
<field id="LIGREM" long_name="Remineralisation loss of ligands" unit="nmol-L/m3/s" grid_ref="grid_T_3D" />
<field id="LIGPR" long_name="Photochemical loss of ligands" unit="nmol-L/m3/s" grid_ref="grid_T_3D" />
<field id="LDETP" long_name="Ligand destruction during phytoplankton uptake" unit="nmol-L/m3/s" grid_ref="grid_T_3D" />
<field id="LPRODZ2" long_name="mesozooplankton ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D" />
<field id="LPRODZ" long_name="microzooplankton ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D" />
<field id="FEZOO" long_name="microzooplankton iron recycling rate" unit="nmol-FeL/m3/s" grid_ref="grid_T_3D" />
<field id="FEZOO2" long_name="mesozooplankton iron recycling rate" unit="nmol-FeL/m3/s" grid_ref="grid_T_3D" />
<field_group id="diad_T" grid_ref="grid_T_2D_inner" >
<field id="PH" long_name="PH" unit="1" grid_ref="grid_T_3D_inner" />
<field id="CO3" long_name="Bicarbonates" unit="mol/m3" grid_ref="grid_T_3D_inner" />
<field id="CO3sat" long_name="CO3 saturation" unit="mol/m3" grid_ref="grid_T_3D_inner" />
<field id="DCAL" long_name="Calcite dissolution" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="PAR" long_name="Photosynthetically Available Radiation" unit="W/m2" grid_ref="grid_T_3D_inner" />
<field id="PPPHYN" long_name="Primary production of nanophyto" unit="molC/m3/s" grid_ref="grid_T_3D_inner" />
<field id="PPPHYP" long_name="Primary production of picophyto" unit="molC/m3/s" grid_ref="grid_T_3D_inner" />
<field id="PPPHYD" long_name="Primary production of diatoms" unit="molC/m3/s" grid_ref="grid_T_3D_inner" />
<field id="PPNEWN" long_name="New Primary production of nanophyto" unit="molC/m3/s" grid_ref="grid_T_3D_inner" />
<field id="PPNEWP" long_name="New Primary production of picophyto" unit="molC/m3/s" grid_ref="grid_T_3D_inner" />
<field id="PPNEWD" long_name="New Primary production of diatoms" unit="molC/m3/s" grid_ref="grid_T_3D_inner" />
<field id="PBSi" long_name="Primary production of Si diatoms" unit="molC/m3/s" grid_ref="grid_T_3D_inner" />
<field id="PFeN" long_name="Primary production of nano iron" unit="molC/m3/s" grid_ref="grid_T_3D_inner" />
<field id="PFeP" long_name="Primary production of pico iron" unit="molC/m3/s" grid_ref="grid_T_3D_inner" />
<field id="PFeD" long_name="Primary production of diatoms iron" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="xfracal" long_name="Calcifying fraction" unit="1" grid_ref="grid_T_3D_inner" />
<field id="PCAL" long_name="Calcite production" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="GRAZ1" long_name="Grazing by microzooplankton" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="GRAZ2" long_name="Grazing by mesozooplankton" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="REMIN" long_name="Oxic remineralization of OM" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="DENIT" long_name="Anoxic remineralization of OM" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="REMINP" long_name="Oxic remineralization rate of POC" unit="d-1" grid_ref="grid_T_3D_inner" />
<field id="REMING" long_name="Oxic remineralization rate of GOC" unit="d-1" grid_ref="grid_T_3D_inner" />
<field id="Nfix" long_name="Nitrogen fixation" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="Mumax" long_name="Maximum growth rate" unit="s-1" grid_ref="grid_T_3D_inner" />
<field id="MuN" long_name="Realized growth rate for nanophyto" unit="s-1" grid_ref="grid_T_3D_inner" />
<field id="MuP" long_name="Realized growth rate for picophyto" unit="s-1" grid_ref="grid_T_3D_inner" />
<field id="MuD" long_name="Realized growth rate for diatomes" unit="s-1" grid_ref="grid_T_3D_inner" />
<field id="MunetN" long_name="Net growth rate for nanophyto" unit="s-1" grid_ref="grid_T_3D_inner" />
<field id="MunetP" long_name="Net growth rate for picophyto" unit="s-1" grid_ref="grid_T_3D_inner" />
<field id="MunetD" long_name="Net growth rate for diatomes" unit="s-1" grid_ref="grid_T_3D_inner" />
<field id="LNnut" long_name="Nutrient limitation term in Nanophyto" unit="" grid_ref="grid_T_3D_inner" />
<field id="LPnut" long_name="Nutrient limitation term in Picophyto" unit="-" grid_ref="grid_T_3D_inner" />
<field id="LDnut" long_name="Nutrient limitation term in Diatoms" unit="" grid_ref="grid_T_3D_inner" />
<field id="LNFe" long_name="Iron limitation term in Nanophyto" unit="" grid_ref="grid_T_3D_inner" />
<field id="LPFe" long_name="Iron limitation term in Picophyto" unit="-" grid_ref="grid_T_3D_inner" />
<field id="LDFe" long_name="Iron limitation term in Diatoms" unit="" grid_ref="grid_T_3D_inner" />
<field id="LNlight" long_name="Light limitation term in Nanophyto" unit="" grid_ref="grid_T_3D_inner" />
<field id="LPlight" long_name="Light limitation term in Picophyto" unit="-" grid_ref="grid_T_3D_inner" />
<field id="LDlight" long_name="Light limitation term in Diatoms" unit="" grid_ref="grid_T_3D_inner" />
<field id="SIZEN" long_name="Mean relative size of nanophyto." unit="-" grid_ref="grid_T_3D_inner" />
<field id="SIZEP" long_name="Mean relative size of picophyto." unit="-" grid_ref="grid_T_3D_inner" />
<field id="SIZED" long_name="Mean relative size of diatoms" unit="-" grid_ref="grid_T_3D_inner" />
<field id="RASSD" long_name="Size of the protein machinery (Diat.)" unit="-" grid_ref="grid_T_3D_inner" />
<field id="RASSN" long_name="Size of the protein machinery (Nano.)" unit="-" grid_ref="grid_T_3D_inner" />
<field id="RASSP" long_name="Size of the protein machinery (Pico.)" unit="-" grid_ref="grid_T_3D_inner" />
<field id="Fe3" long_name="Iron III concentration" unit="nmol/m3" grid_ref="grid_T_3D_inner" />
<field id="FeL1" long_name="Complexed Iron concentration with L1" unit="nmol/m3" grid_ref="grid_T_3D_inner" />
<field id="TL1" long_name="Total L1 concentration" unit="nmol/m3" grid_ref="grid_T_3D_inner" />
<field id="pdust" long_name="dust concentration" unit="g/m3" />
<field id="Totlig" long_name="Total ligand concentation" unit="nmol/m3" grid_ref="grid_T_3D_inner" />
<field id="Biron" long_name="Bioavailable iron" unit="nmol/m3" grid_ref="grid_T_3D_inner" />
<field id="Sdenit" long_name="Nitrate reduction in the sediments" unit="mol/m2/s" />
<field id="Ironice" long_name="Iron input/uptake due to sea ice" unit="mol/m2/s" />
<field id="SedCal" long_name="Calcite burial in the sediments" unit="molC/m2/s" />
<field id="SedSi" long_name="Silicon burial in the sediments" unit="molSi/m2/s" />
<field id="SedC" long_name="Organic C burial in the sediments" unit="molC/m2/s" />
<field id="HYDR" long_name="Iron input from hydrothemal vents" unit="mol/m2/s" grid_ref="grid_T_3D_inner" />
<field id="EPC100" long_name="Export of carbon particles at 100 m" unit="mol/m2/s" />
<field id="EPFE100" long_name="Export of biogenic iron at 100 m" unit="mol/m2/s" />
<field id="EPSI100" long_name="Export of Silicate at 100 m" unit="mol/m2/s" />
<field id="EPCAL100" long_name="Export of Calcite at 100 m" unit="mol/m2/s" />
<field id="EXPC" long_name="Export of carbon" unit="mol/m2/s" grid_ref="grid_T_3D_inner" />
<field id="EXPFE" long_name="Export of biogenic iron" unit="mol/m2/s" grid_ref="grid_T_3D_inner" />
<field id="EXPSI" long_name="Export of Silicate" unit="mol/m2/s" grid_ref="grid_T_3D_inner" />
<field id="EXPCAL" long_name="Export of Calcite" unit="mol/m2/s" grid_ref="grid_T_3D_inner" />
<field id="Cflx" long_name="DIC flux" unit="mol/m2/s" />
<field id="Oflx" long_name="Oxygen flux" unit="mol/m2/s" />
<field id="Kg" long_name="Gas transfer" unit="mol/m2/s/uatm" />
<field id="Dpco2" long_name="Delta CO2" unit="uatm" />
<field id="pCO2sea" long_name="surface ocean pCO2" unit="uatm" />
<field id="Dpo2" long_name="Delta O2" unit="uatm" />
<field id="Heup" long_name="Euphotic layer depth" unit="m" grid_ref="grid_T_2D_inner" />
<field id="AtmCo2" long_name="Atmospheric CO2 concentration" unit="ppm" />
<field id="Irondep" long_name="Iron deposition from dust" unit="mol/m2/s" />
<field id="Ironsed" long_name="Iron deposition from sediment" unit="mol/m2/s" grid_ref="grid_T_3D_inner" />
<field id="FESCAV" long_name="Scavenging of Iron" unit="mmol-Fe/m3/s" grid_ref="grid_T_3D_inner" />
<field id="FECOLL" long_name="Colloidal Pumping of FeL" unit="mmol-FeL/m3/s" grid_ref="grid_T_3D_inner" />
<field id="LGWCOLL" long_name="Coagulation loss of ligands" unit="mmol-L/m3/s" grid_ref="grid_T_3D_inner" />
<field id="REMINF" long_name="Oxic remineralization suppy of Fe" unit="mmol-Fe/m3/s" grid_ref="grid_T_3D_inner" />
<field id="BACT" long_name="Bacterial Biomass" unit="mmol/m3" grid_ref="grid_T_3D_inner" />
<field id="FEBACT" long_name="Bacterial uptake of Fe" unit="molFe/m3/s" grid_ref="grid_T_3D_inner" />
<field id="FEPREC" long_name="Precipitation of Fe" unit="molFe/m3/s" grid_ref="grid_T_3D_inner" />
<field id="LPRODR" long_name="OM remineralisation ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D_inner" />
<field id="LPRODP" long_name="phytoplankton ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D_inner" />
<field id="LIGREM" long_name="Remineralisation loss of ligands" unit="nmol-L/m3/s" grid_ref="grid_T_3D_inner" />
<field id="LIGPR" long_name="Photochemical loss of ligands" unit="nmol-L/m3/s" grid_ref="grid_T_3D_inner" />
<field id="LDETP" long_name="Ligand destruction during phytoplankton uptake" unit="nmol-L/m3/s" grid_ref="grid_T_3D_inner" />
<field id="LPRODZ2" long_name="mesozooplankton ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D_inner" />
<field id="LPRODZ" long_name="microzooplankton ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D_inner" />
<field id="FEZOO" long_name="microzooplankton iron recycling rate" unit="nmol-FeL/m3/s" grid_ref="grid_T_3D_inner" />
<field id="FEZOO2" long_name="mesozooplankton iron recycling rate" unit="nmol-FeL/m3/s" grid_ref="grid_T_3D_inner" />
<!-- PISCES tracers trends -->
<field id="INTdtAlk" long_name="Vertically int. of change of alkalinity" unit="mol/m2/s" />
<field id="INTdtDIC" long_name="Vertically int. of change of dissic " unit="mol/m2/s" />
<field id="INTdtFer" long_name="Vertically int. of change of iron " unit="mol/m2/s" />
<field id="INTdtDIN" long_name="Vertically int. of change of nitrogen " unit="mol/m2/s" />
<field id="INTdtDIP" long_name="Vertically int. of change of phophate " unit="mol/m2/s" />
<field id="INTdtSil" long_name="Vertically int. of change of silicon " unit="mol/m2/s" />
<field id="INTdtAlk" long_name="Vertically int. of change of alkalinity" unit="mol/m2/s" />
<field id="INTdtDIC" long_name="Vertically int. of change of dissic " unit="mol/m2/s" />
<field id="INTdtFer" long_name="Vertically int. of change of iron " unit="mol/m2/s" />
<field id="INTdtDIN" long_name="Vertically int. of change of nitrogen " unit="mol/m2/s" />
<field id="INTdtDIP" long_name="Vertically int. of change of phophate " unit="mol/m2/s" />
<field id="INTdtSil" long_name="Vertically int. of change of silicon " unit="mol/m2/s" />
<!-- dbio_T on T grid : variables available with diaar5 -->
<field id="TPP" long_name="Total Primary production of phyto" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="TPNEW" long_name="New Primary production of phyto" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="TPBFE" long_name="Total biogenic iron production" unit="mol/m3/s" grid_ref="grid_T_3D" />
<field id="TPP" long_name="Total Primary production of phyto" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="TPNEW" long_name="New Primary production of phyto" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="TPBFE" long_name="Total biogenic iron production" unit="mol/m3/s" grid_ref="grid_T_3D_inner" />
<field id="INTDIC" long_name="DIC content" unit="kg/m2" />
<field id="O2MIN" long_name="Oxygen minimum concentration" unit="mol/m3" />
<field id="ZO2MIN" long_name="Depth of oxygen minimum concentration" unit="m" />
......@@ -292,9 +292,9 @@
<field id="INTPBSI" long_name="Vertically integrated of biogenic Si production" unit="mol/m2/s" grid_ref="grid_T_vsum" detect_missing_value="true" > PBSi * e3t </field >
<!-- PISCES light : variables available with key_pisces_reduced -->
<field id="FNO3PHY" long_name="FNO3PHY" unit="" grid_ref="grid_T_3D" />
<field id="FNH4PHY" long_name="FNH4PHY" unit="" grid_ref="grid_T_3D" />
<field id="FNH4NO3" long_name="FNH4NO3" unit="" grid_ref="grid_T_3D" />
<field id="FNO3PHY" long_name="FNO3PHY" unit="" grid_ref="grid_T_3D_inner" />
<field id="FNH4PHY" long_name="FNH4PHY" unit="" grid_ref="grid_T_3D_inner" />
<field id="FNH4NO3" long_name="FNH4NO3" unit="" grid_ref="grid_T_3D_inner" />
<field id="TNO3PHY" long_name="TNO3PHY" unit="" />
<field id="TNH4PHY" long_name="TNH4PHY" unit="" />
<field id="TPHYDOM" long_name="TPHYDOM" unit="" />
......
cfgs/SHARED/grid_def_nemo.xml
View file @ 5bc9e5ca
......@@ -336,41 +336,44 @@
<scalar />
</grid>
<grid id="diamlr_grid_T_2D" >
<domain domain_ref="grid_T" />
<domain domain_ref="grid_T_inner" />
<scalar />
</grid>
<grid id="diamlr_grid_T_2D_inner" >
<domain domain_ref="grid_T_inner" />
</grid>
<grid id="diamlr_grid_U_2D" >
<domain domain_ref="grid_U" />
<domain domain_ref="grid_U_inner" />
<scalar />
</grid>
<grid id="diamlr_grid_V_2D" >
<domain domain_ref="grid_V" />
<domain domain_ref="grid_V_inner" />
<scalar />
</grid>
<grid id="diamlr_grid_W_2D" >
<domain domain_ref="grid_W" />
<domain domain_ref="grid_W_inner" />
<scalar />
</grid>
<grid id="diamlr_grid_2D_to_grid_T_3D" >
<domain domain_ref="grid_T" />
<domain domain_ref="grid_T_inner" />
<axis axis_ref="deptht">
<duplicate_scalar />
</axis>
</grid>
<grid id="diamlr_grid_2D_to_grid_U_3D" >
<domain domain_ref="grid_U" />
<domain domain_ref="grid_U_inner" />
<axis axis_ref="depthu">
<duplicate_scalar />
</axis>
</grid>
<grid id="diamlr_grid_2D_to_grid_V_3D" >
<domain domain_ref="grid_V" />
<domain domain_ref="grid_V_inner" />
<axis axis_ref="depthv">
<duplicate_scalar />
</axis>
</grid>
<grid id="diamlr_grid_2D_to_grid_W_3D" >
<domain domain_ref="grid_W" />
<domain domain_ref="grid_W_inner" />
<axis axis_ref="depthw">
<duplicate_scalar />
</axis>
......@@ -383,37 +386,37 @@
</grid>
<!-- grid definitions for the computation of daily detided model diagnostics (diadetide) -->
<grid id="diadetide_grid_T_2D" >
<domain domain_ref="grid_T" />
<domain domain_ref="grid_T_inner" />
<scalar />
</grid>
<grid id="diadetide_grid_U_2D" >
<domain domain_ref="grid_U" />
<domain domain_ref="grid_U_inner" />
<scalar />
</grid>
<grid id="diadetide_grid_V_2D" >
<domain domain_ref="grid_V" />
<domain domain_ref="grid_V_inner" />
<scalar />
</grid>
<grid id="diadetide_grid_2D_to_grid_T_3D" >
<domain domain_ref="grid_T" />
<domain domain_ref="grid_T_inner" />
<axis axis_ref="deptht">
<duplicate_scalar />
</axis>
</grid>
<grid id="diadetide_grid_2D_to_grid_U_3D" >
<domain domain_ref="grid_U" />
<domain domain_ref="grid_U_inner" />
<axis axis_ref="depthu">
<duplicate_scalar />
</axis>
</grid>
<grid id="diadetide_grid_2D_to_grid_V_3D" >
<domain domain_ref="grid_V" />
<domain domain_ref="grid_V_inner" />
<axis axis_ref="depthv">
<duplicate_scalar />
</axis>
</grid>
<grid id="diadetide_grid_2D_to_grid_W_3D" >
<domain domain_ref="grid_W" />
<domain domain_ref="grid_W_inner" />
<axis axis_ref="depthw">
<duplicate_scalar />
</axis>
......
cfgs/SHARED/namelist_ref
View file @ 5bc9e5ca
......@@ -369,7 +369,7 @@
!*** receive ***
sn_rcv_w10m = 'none' , 'no' , '' , '' , ''
sn_rcv_taumod = 'coupled' , 'no' , '' , '' , ''
sn_rcv_tau = 'oce only' , 'no' , 'cartesian' , 'eastward-northward' , 'U,V'
sn_rcv_tau = 'oce only' , 'no' , 'cartesian' , 'eastward-northward' , ''
sn_rcv_dqnsdt = 'coupled' , 'no' , '' , '' , ''
sn_rcv_qsr = 'oce and ice' , 'no' , '' , '' , ''
sn_rcv_qns = 'oce and ice' , 'no' , '' , '' , ''
......@@ -380,21 +380,22 @@
sn_rcv_iceflx = 'none' , 'no' , '' , '' , ''
sn_rcv_mslp = 'none' , 'no' , '' , '' , ''
sn_rcv_ts_ice = 'none' , 'no' , '' , '' , ''
sn_rcv_qtrice = 'none' , 'no' , '' , '' , ''
sn_rcv_isf = 'none' , 'no' , '' , '' , ''
sn_rcv_icb = 'none' , 'no' , '' , '' , ''
sn_rcv_hsig = 'none' , 'no' , '' , '' , 'T'
sn_rcv_phioc = 'none' , 'no' , '' , '' , 'T'
sn_rcv_sdrfx = 'none' , 'no' , '' , '' , 'T'
sn_rcv_sdrfy = 'none' , 'no' , '' , '' , 'T'
sn_rcv_wper = 'none' , 'no' , '' , '' , 'T'
sn_rcv_wnum = 'none' , 'no' , '' , '' , 'T'
sn_rcv_wstrf = 'none' , 'no' , '' , '' , 'T'
sn_rcv_wdrag = 'none' , 'no' , '' , '' , 'T'
sn_rcv_charn = 'none' , 'no' , '' , '' , 'T'
sn_rcv_taw = 'none' , 'no' , '' , '' , 'U,V'
sn_rcv_bhd = 'none' , 'no' , '' , '' , 'T'
sn_rcv_tusd = 'none' , 'no' , '' , '' , 'T'
sn_rcv_tvsd = 'none' , 'no' , '' , '' , 'T'
sn_rcv_hsig = 'none' , 'no' , '' , '' , ''
sn_rcv_phioc = 'none' , 'no' , '' , '' , ''
sn_rcv_sdrfx = 'none' , 'no' , '' , '' , ''
sn_rcv_sdrfy = 'none' , 'no' , '' , '' , ''
sn_rcv_wper = 'none' , 'no' , '' , '' , ''
sn_rcv_wnum = 'none' , 'no' , '' , '' , ''
sn_rcv_wstrf = 'none' , 'no' , '' , '' , ''
sn_rcv_wdrag = 'none' , 'no' , '' , '' , ''
sn_rcv_charn = 'none' , 'no' , '' , '' , ''
sn_rcv_taw = 'none' , 'no' , '' , '' , ''
sn_rcv_bhd = 'none' , 'no' , '' , '' , ''
sn_rcv_tusd = 'none' , 'no' , '' , '' , ''
sn_rcv_tvsd = 'none' , 'no' , '' , '' , ''
/
!-----------------------------------------------------------------------
&namsbc_sas ! Stand-Alone Surface module: ocean data (SAS_SRC only)
......@@ -882,6 +883,9 @@
!
! ! S-EOS coefficients (ln_seos=T):
! ! rd(T,S,Z)*rho0 = -a0*(1+.5*lambda*dT+mu*Z+nu*dS)*dT+b0*dS
! ! dT = T-rn_T0 ; dS = S-rn_S0
rn_T0 = 10. ! reference temperature
rn_S0 = 35. ! reference salinity
rn_a0 = 1.6550e-1 ! thermal expension coefficient
rn_b0 = 7.6554e-1 ! saline expension coefficient
rn_lambda1 = 5.9520e-2 ! cabbeling coeff in T^2 (=0 for linear eos)
......
cfgs/SPITZ12/EXPREF/file_def_nemo-oce.xml
View file @ 5bc9e5ca
......@@ -34,6 +34,8 @@
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="utau" name="tauuo" />
<field field_ref="vtau" name="tauvo" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
<!-- ice and snow -->
......@@ -44,7 +46,6 @@
<field field_ref="e3u" />
<field field_ref="ssu" name="uos" />
<field field_ref="uoce" name="uo" operation="instant" freq_op="5d" > @uoce_e3u / @e3u </field>
<field field_ref="utau" name="tauuo" />
<field field_ref="uocetr_eff" name="uocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="u_masstr" name="vozomatr" />
......@@ -56,7 +57,6 @@
<field field_ref="e3v" />
<field field_ref="ssv" name="vos" />
<field field_ref="voce" name="vo" operation="instant" freq_op="5d" > @voce_e3v / @e3v </field>
<field field_ref="vtau" name="tauvo" />
<field field_ref="vocetr_eff" name="vocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="v_masstr" name="vomematr" />
......
cfgs/WED025/EXPREF/file_def_nemo-oce.xml
View file @ 5bc9e5ca
......@@ -31,6 +31,8 @@
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="utau" name="tauuo" />
<field field_ref="vtau" name="tauvo" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
<field field_ref="snowpre" />
......@@ -67,14 +69,12 @@
<field field_ref="e3u" />
<field field_ref="ssu" name="uos" />
<field field_ref="uoce" name="uo" operation="instant" freq_op="5d" > @uoce_e3u / @e3u </field>
<field field_ref="utau" name="tauuo" />
</file>
<file id="file13" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="e3v" />
<field field_ref="ssv" name="vos" />
<field field_ref="voce" name="vo" operation="instant" freq_op="5d" > @voce_e3v / @e3v </field>
<field field_ref="vtau" name="tauvo" />
</file>
<file id="file14" name_suffix="_grid_W" description="ocean W grid variables" >
......
sette/BATCH_TEMPLATE/batch-X64_JEANZAY
View file @ 5bc9e5ca
......@@ -2,6 +2,7 @@
#SBATCH -A GROUP_IDRIS@cpu
#SBATCH --job-name=SETTE_JOB # nom du job
#SBATCH --partition=cpu_p1 # Nom de la partition d'exécution
#SBATCH --qos=qos_cpu-dev # quality of service
#SBATCH --ntasks=NPROCS # Nombre total de processus MPI
#SBATCH --ntasks-per-node=40 # Nombre de processus MPI par noeud
# /!\ Attention, la ligne suivante est trompeuse mais dans le vocabulaire
......
sette/all_functions.sh
View file @ 5bc9e5ca
......@@ -172,7 +172,8 @@ clean_config() {
# define validation dir
set_valid_dir () {
if [ ${DETACHED_HEAD} == "no" ] ; then
REVISION_NB=`git -C ${MAIN_DIR} rev-list --abbrev-commit origin | head -1l`
branchname=$( git branch --show-current )
REVISION_NB=$( git -C ${MAIN_DIR} rev-list --abbrev-commit origin/$branchname | head -1l )
else
REVISION_NB=${DETACHED_CMIT}
fi
......
sette/sette_eval.sh
View file @ 5bc9e5ca
......@@ -272,7 +272,7 @@ if [[ $? == 0 ]] ; then
branchname="Unknown"
fi
else
revision=`git rev-list --abbrev-commit origin | head -1l`
revision=$( git rev-list --abbrev-commit origin/$branchname | head -1l )
fi
else
branchname="Unknown"
......
sette/sette_rpt.sh
View file @ 5bc9e5ca
......@@ -584,7 +584,7 @@ if [[ $? == 0 ]] ; then
branchname="Unknown"
fi
else
revision=`git rev-list --abbrev-commit origin | head -1l`
revision=$( git rev-list --abbrev-commit origin/$branchname | head -1l )
fi
else
branchname="Unknown"
......
src/ABL/ablmod.F90
View file @ 5bc9e5ca
......@@ -98,8 +98,8 @@ CONTAINS
REAL(wp) , INTENT(in ), DIMENSION(:,: ) :: pevp_ice ! Ce x Du over ice (T-point)
REAL(wp) , INTENT(in ), DIMENSION(:,: ) :: pwndm_ice ! ||uwnd - uice||
REAL(wp) , INTENT(in ), DIMENSION(:,: ) :: pfrac_oce ! ocean fraction
REAL(wp) , INTENT( out), DIMENSION(:,: ) :: ptaui_ice ! ice-surface taux stress (U-point)
REAL(wp) , INTENT( out), DIMENSION(:,: ) :: ptauj_ice ! ice-surface tauy stress (V-point)
REAL(wp) , INTENT( out), DIMENSION(:,: ) :: ptaui_ice ! ice-surface taux stress (T-point)
REAL(wp) , INTENT( out), DIMENSION(:,: ) :: ptauj_ice ! ice-surface tauy stress (T-point)
#endif
!
REAL(wp), DIMENSION(1:jpi,1:jpj ) :: zwnd_i, zwnd_j
......@@ -617,25 +617,17 @@ CONTAINS
zwnd_i(ji,jj) = zztmp * zwnd_i(ji,jj)
zwnd_j(ji,jj) = zztmp * zwnd_j(ji,jj)
END_2D
! ... utau, vtau at U- and V_points, resp.
! Note the use of 0.5*(2-umask) in order to unmask the stress along coastlines
! Note the use of MAX(tmask(i,j),tmask(i+1,j) is to mask tau over ice shelves
DO_2D( 0, 0, 0, 0 )
zcff = 0.5_wp * ( 2._wp - msk_abl(ji,jj)*msk_abl(ji+1,jj) )
zztmp = MAX(msk_abl(ji,jj),msk_abl(ji+1,jj))
ptaui(ji,jj) = zcff * zztmp * ( zwnd_i(ji,jj) + zwnd_i(ji+1,jj ) )
zcff = 0.5_wp * ( 2._wp - msk_abl(ji,jj)*msk_abl(ji,jj+1) )
zztmp = MAX(msk_abl(ji,jj),msk_abl(ji,jj+1))
ptauj(ji,jj) = zcff * zztmp * ( zwnd_j(ji,jj) + zwnd_j(ji ,jj+1) )
! ... utau, vtau at T-points
DO_2D( nn_hls, nn_hls, nn_hls, nn_hls )
ptaui(ji,jj) = zwnd_i(ji,jj) * msk_abl(ji,jj) !!clem tau: check
ptauj(ji,jj) = zwnd_j(ji,jj) * msk_abl(ji,jj) !!clem tau: check
END_2D
!
CALL lbc_lnk( 'ablmod', ptaui(:,:), 'U', -1.0_wp, ptauj(:,:), 'V', -1.0_wp )
CALL iom_put( "taum_oce", ptaum )
IF(sn_cfctl%l_prtctl) THEN
CALL prt_ctl( tab2d_1=ptaui , clinfo1=' abl_stp: utau : ', mask1=umask, &
& tab2d_2=ptauj , clinfo2=' vtau : ', mask2=vmask )
CALL prt_ctl( tab2d_1=ptaui , clinfo1=' abl_stp: utau : ', mask1=tmask, &
& tab2d_2=ptauj , clinfo2=' vtau : ', mask2=tmask )
CALL prt_ctl( tab2d_1=pwndm , clinfo1=' abl_stp: wndm : ' )
ENDIF
......@@ -657,23 +649,14 @@ CONTAINS
! ------------------------------------------------------------ !
! Wind stress relative to the moving ice ( U10m - U_ice ) !
! ------------------------------------------------------------ !
DO_2D( 0, 0, 0, 0 )
zztmp1 = 0.5_wp * ( u_abl(ji+1,jj ,2,nt_a) + u_abl(ji,jj,2,nt_a) )
zztmp2 = 0.5_wp * ( v_abl(ji ,jj+1,2,nt_a) + v_abl(ji,jj,2,nt_a) )
ptaui_ice(ji,jj) = 0.5_wp * ( rhoa(ji+1,jj) * pCd_du_ice(ji+1,jj) &
& + rhoa(ji ,jj) * pCd_du_ice(ji ,jj) ) &
& * ( zztmp1 - pssu_ice(ji,jj) * rn_vfac )
ptauj_ice(ji,jj) = 0.5_wp * ( rhoa(ji,jj+1) * pCd_du_ice(ji,jj+1) &
& + rhoa(ji,jj ) * pCd_du_ice(ji,jj ) ) &
& * ( zztmp2 - pssv_ice(ji,jj) * rn_vfac )
DO_2D( nn_hls, nn_hls, nn_hls, nn_hls )
ptaui_ice(ji,jj) = rhoa(ji,jj) * pCd_du_ice(ji,jj) * ( u_abl(ji,jj,2,nt_a) - pssu_ice(ji,jj) * rn_vfac )
ptauj_ice(ji,jj) = rhoa(ji,jj) * pCd_du_ice(ji,jj) * ( v_abl(ji,jj,2,nt_a) - pssv_ice(ji,jj) * rn_vfac )
END_2D
CALL lbc_lnk( 'ablmod', ptaui_ice, 'U', -1.0_wp, ptauj_ice,'V', -1.0_wp )
!
IF(sn_cfctl%l_prtctl) THEN
CALL prt_ctl( tab2d_1=ptaui_ice , clinfo1=' abl_stp: utau_ice : ', mask1=umask, &
& tab2d_2=ptauj_ice , clinfo2=' vtau_ice : ', mask2=vmask )
CALL prt_ctl( tab2d_1=ptaui_ice , clinfo1=' abl_stp: utau_ice : ', mask1=tmask, &
& tab2d_2=ptauj_ice , clinfo2=' vtau_ice : ', mask2=tmask )
END IF
#endif
! !<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
......