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Update documentation related to BDY use in NEMO and TOP

Tomas Lovato requested to merge bdy_chapter into main

Modifies the documentation of BDY for the following items

  • improve description of BDY usage through nambdy_index in NEMO manual
  • update use of BDY within TOP interface (according to changes from 2022WP activities)
  • fix small issues with TOP manual cross references

Other minor changes

  • update the gallery submodule revision (updated CMCC logo)
Edited by Tomas Lovato

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