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with 395 additions and 231 deletions
cfgs/C1D_PAPA/EXPREF/namelist_cfg → cfgs/C1D/EXP_PAPA/namelist_cfg
View file @ e3c1f33f
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! NEMO/OCE : Reference namelist_ref !!
!! NEMO/OCE Configuration namelist : overwrite default values defined in SHARED/namelist_ref
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! NEMO/OCE : 1 - Domain & run manager (namrun, namcfg, namdom, namtsd, namcrs, namc1d, namc1d_uvd)
!! namelists 2 - Surface boundary (namsbc, namsbc_flx, namsbc_blk, namsbc_cpl,
!! namsbc_sas, namtra_qsr, namsbc_rnf,
!! namsbc_isf, namsbc_iscpl, namsbc_apr,
!! namsbc_ssr, namsbc_wave, namberg)
!! 3 - lateral boundary (namlbc, namagrif, nambdy, nambdy_tide)
!! 4 - top/bot boundary (namdrg, namdrg_top, namdrg_bot, nambbc, nambbl)
!! 5 - Tracer (nameos, namtra_adv, namtra_ldf, namtra_eiv, namtra_dmp)
!! 6 - dynamics (namdyn_adv, namdyn_vor, namdyn_hpg, namdyn_spg, namdyn_ldf)
!! 7 - Vertical physics (namzdf, namzdf_ric, namzdf_tke, namzdf_gls, namzdf_iwm)
!! 8 - diagnostics (namnc4, namtrd, namspr, namflo, namhsb)
!! 9 - Obs & Assim (namobs, nam_asminc)
!! 10 - miscellaneous (nammpp, namctl, namsto)
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! C1D - PAPA configuration !!
!!======================================================================
!! *** Domain & Run management namelists *** !!
!! !!
......@@ -24,10 +10,7 @@
!! namcfg parameters of the configuration (default: user defined GYRE)
!! namwad Wetting and drying (default: OFF)
!! namtsd data: temperature & salinity (default: OFF)
!! namcrs coarsened grid (for outputs and/or TOP) (ln_crs =T)
!! namc1d 1D configuration options (ln_c1d =T)
!! namc1d_dyndmp 1D newtonian damping applied on currents (ln_c1d =T)
!! namc1d_uvd 1D data (currents) (ln_c1d =T)
!!======================================================================
!
!-----------------------------------------------------------------------
......@@ -44,12 +27,11 @@
nn_date0 = 20100615 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1)
nn_stock = 87600 ! frequency of creation of a restart file (modulo referenced to 1)
nn_write = 240 ! frequency of write in the output file (modulo referenced to nn_it000)
ln_top = .false. ! Consider (T) or bypass (F) the TOP routines when the key_top is activated
/
!-----------------------------------------------------------------------
&namdom ! time and space domain
!-----------------------------------------------------------------------
ln_linssh = .true. ! =T linear free surface ==>> model level are fixed in time
!
rn_Dt = 360. ! time step for the dynamics and tracer
!
ln_c1d = .true. ! Single column domain (1x1pt) (T => fill namc1d)
......@@ -68,7 +50,7 @@
! ! =T read T-S fields for:
ln_tsd_init = .true. ! ocean initialisation
cn_dir = './' ! root directory for the T-S data location
cn_dir = './PAPA/' ! root directory for the T-S data location
!___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! ! pairing ! filename !
......@@ -80,28 +62,16 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namcrs ! coarsened grid (for outputs and/or TOP) (ln_crs =T)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namc1d ! 1D configuration options (ln_c1d =T default: PAPA station)
!-----------------------------------------------------------------------
rn_lat1d = 50. ! Column latitude
rn_lon1d = -145. ! Column longitude
/
!-----------------------------------------------------------------------
&namc1d_dyndmp ! U & V newtonian damping (ln_c1d =T default: OFF)
!-----------------------------------------------------------------------
ln_dyndmp = .false. ! add a damping term (T) or not (F)
/
!-----------------------------------------------------------------------
&namc1d_uvd ! data: U & V currents (ln_c1d =T default: OFF)
!-----------------------------------------------------------------------
! ! =T read U-V fields for:
ln_uvd_init = .false. ! ocean initialisation
ln_uvd_dyndmp = .false. ! U-V restoring
cn_dir = './' ! root directory for the U-V data location
!
cn_dir = './PAPA/' ! root directory for the U-V data location
!___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! ! pairing ! filename !
......@@ -152,7 +122,7 @@
rn_zqt = 2. ! Air temperature & humidity reference height (m)
rn_zu = 10. ! Wind vector reference height (m)
cn_dir = './' ! root directory for the bulk data location
cn_dir = './PAPA/' ! root directory for the bulk data location
!___________!_________________________!___________________!___________!_____________!________!___________!______________________________________!__________!_______________!
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! ! pairing ! filename !
......@@ -165,7 +135,6 @@
sn_prec = 'forcing_C1D_PAPA' , 3. , 'sowaprec', .false. , .false. , 'yearly' , '' , '' , ''
sn_snow = 'forcing_C1D_PAPA' , 3. , 'sososnow', .false. , .false. , 'yearly' , '' , '' , ''
sn_slp = 'forcing_C1D_PAPA' , 3. , 'somslpre', .true. , .false. , 'yearly' , '' , '' , ''
/
!-----------------------------------------------------------------------
&namsbc_cpl ! coupled ocean/atmosphere model ("key_oasis3")
......@@ -183,13 +152,20 @@
&namtra_qsr ! penetrative solar radiation (ln_traqsr =T)
!-----------------------------------------------------------------------
! ! type of penetration (default: NO selection)
ln_qsr_rgb = .true. ! RGB light penetration (Red-Green-Blue)
ln_qsr_5bd = .true. ! 5BD light penetration (IR-Red-Green-Blue-UV)
! ! RGB, 2BD & 5BD choices:
rn_abs = 0.45 ! RGB, 2BD & 5BD : fraction absorbed in the very near surface
nn_chldta = 1 ! RGB & 5BD: cst value (=0) or Chl data (=1)
nn_chlprfl = 0 ! Chl vertical profile (nn_chldta = 1)
! 0 = vertical extrapolation of surface data
! 1 = vertical analytical profile deduced from surface data
! 2 = 3D Chl data
rn_par = 0.47 ! 5BD : fraction of photosynthetically active radiation
cn_dir = './' ! root directory for the chlorophyl data location
cn_dir = './PAPA/' ! root directory for the chlorophyl data location
!___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! ! pairing ! filename !
sn_chl ='chlorophyll_PAPASTATION', -1. , 'CHLA' , .true. , .true. , 'yearly' , '' , '' , ''
/
!-----------------------------------------------------------------------
......@@ -418,13 +394,10 @@
!! *** Diagnostics namelists *** !!
!! !!
!! namtrd dynamics and/or tracer trends (default: OFF)
!! namhsb Heat and salt budgets (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namflo float parameters (default: OFF)
!! nam_diadct transports through some sections (default: OFF)
!! nam_dia25h 25h Mean Output (default: OFF)
!! namnc4 netcdf4 chunking and compression settings ("key_netcdf4")
!! namnc4 netcdf4 chunking and compression settings
!!======================================================================
!
!-----------------------------------------------------------------------
......@@ -432,27 +405,15 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namhsb ! Heat and salt budgets (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namdiu ! Cool skin and warm layer models (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namflo ! float parameters (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nam_diadct ! transports through some sections (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nam_dia25h ! 25h Mean Output (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namnc4 ! netcdf4 chunking and compression settings ("key_netcdf4")
&namnc4 ! netcdf4 chunking and compression settings
!-----------------------------------------------------------------------
/
......
cfgs/C1D/EXP_PISCES_BATS/axis_def_nemo.xml 0 → 120000
View file @ e3c1f33f
../../SHARED/axis_def_nemo.xml
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/context_nemo.xml 0 → 100644
View file @ e3c1f33f
<!--
==============================================================================================
NEMO context
==============================================================================================
-->
<context id="nemo">
<variable_definition>
<!-- Year/Month/Day of time origin for NetCDF files; defaults to 1800-01-01 -->
<variable id="ref_year" type="int"> 1900 </variable>
<variable id="ref_month" type="int"> 01 </variable>
<variable id="ref_day" type="int"> 01 </variable>
<variable id="rau0" type="float" > 1026.0 </variable>
<variable id="cpocean" type="float" > 3991.86795711963 </variable>
<variable id="convSpsu" type="float" > 0.99530670233846 </variable>
<variable id="rhoic" type="float" > 917.0 </variable>
<variable id="rhosn" type="float" > 330.0 </variable>
<variable id="missval" type="float" > 1.e20 </variable>
</variable_definition>
<!-- Fields definition -->
<field_definition src="./field_def_nemo-oce.xml"/> <!-- NEMO ocean dynamics -->
<field_definition src="./field_def_nemo-ice.xml"/> <!-- NEMO sea-ice model -->
<field_definition src="./field_def_nemo-pisces.xml"/> <!-- NEMO ocean biology -->
<!-- Files definition -->
<file_definition src="./file_def_nemo.xml"/> <!-- NEMO ocean biology -->
<!-- Axis definition -->
<axis_definition src="./axis_def_nemo.xml"/>
<!-- Domain definition -->
<domain_definition src="./domain_def_nemo.xml"/>
<!-- Grids definition -->
<grid_definition src="./grid_def_nemo.xml"/>
</context>
cfgs/C1D/EXP_PISCES_BATS/domain_def_nemo.xml 0 → 120000
View file @ e3c1f33f
../../SHARED/domain_def_nemo.xml
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/field_def_nemo-innerttrc.xml 0 → 120000
View file @ e3c1f33f
../../SHARED/field_def_nemo-innerttrc.xml
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/field_def_nemo-oce.xml 0 → 120000
View file @ e3c1f33f
../../SHARED/field_def_nemo-oce.xml
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/field_def_nemo-pisces.xml 0 → 120000
View file @ e3c1f33f
../../SHARED/field_def_nemo-pisces.xml
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/file_def_nemo.xml 0 → 100644
View file @ e3c1f33f
<?xml version="1.0"?>
<!--
============================================================================================================
= output files definition =
= Define your own filesfor ocean dynamics context =
= put the variables you want... =
============================================================================================================
-->
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="1mo" min_digits="4">
<file_group id="oce_1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
</file_group>
<file_group id="oce_1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file id="file1" name_suffix="_nemo" description="pisces sms variables" >
<field field_ref="toce" />
<field field_ref="soce" />
<field field_ref="sst" />
<field field_ref="sss" />
<field field_ref="empmr" />
<field field_ref="wspd" />
<field field_ref="mldr10_1" name="mld" />
<field field_ref="qsr" name="qsr" />
<field field_ref="DIC" />
<field field_ref="Alkalini" />
<field field_ref="O2" />
<field field_ref="CaCO3" />
<field field_ref="PO4" />
<field field_ref="POC" />
<field field_ref="Si" />
<field field_ref="PHY" />
<field field_ref="ZOO" />
<field field_ref="DOC" />
<field field_ref="PHY2" />
<field field_ref="ZOO2" />
<field field_ref="DSi" />
<field field_ref="Fer" />
<field field_ref="BFe" />
<field field_ref="GOC" />
<field field_ref="SFe" />
<field field_ref="DFe" />
<field field_ref="GSi" />
<field field_ref="NFe" />
<field field_ref="NCHL" />
<field field_ref="DCHL" />
<field field_ref="NO3" />
<field field_ref="NH4" />
<field field_ref="INTPP" name="INTPP" />
<field field_ref="PAR" />
<field field_ref="PPPHYN" />
<field field_ref="PPPHYD" />
<field field_ref="PPNEWN" />
<field field_ref="PPNEWD" />
<field field_ref="PBSi" />
<field field_ref="PFeN" />
<field field_ref="PFeD" />
<field field_ref="GRAZ1" />
<field field_ref="GRAZ2" />
<field field_ref="EPC100" />
<field field_ref="EPFE100" />
<field field_ref="EPSI100" />
<field field_ref="EPCAL100" />
<field field_ref="Cflx" />
<field field_ref="Heup" />
</file>
</file_group>
<file_group id="oce_1y" output_freq="1y" output_level="10" enabled=".FALSE."> <!-- real yearly files -->
</file_group>
<file_group id="oce_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="oce_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="oce_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="oce_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="oce_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="oce_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="oce_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="oce_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="oce_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="oce_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="oce_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="oce_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
cfgs/C1D/EXP_PISCES_BATS/grid_def_nemo.xml 0 → 120000
View file @ e3c1f33f
../../SHARED/grid_def_nemo.xml
\ No newline at end of file
tests/DIA_GPU/EXPREF/namelist_pisces_cfg → cfgs/C1D/EXP_PISCES_BATS/namelist_pisces_cfg
View file @ e3c1f33f
......@@ -5,6 +5,7 @@
!-----------------------------------------------------------------------
&nampisext ! air-sea exchange
!-----------------------------------------------------------------------
atcco2 = 280. ! Constant value atmospheric pCO2 - ln_co2int = F
/
!-----------------------------------------------------------------------
&nampisatm ! Atmospheric prrssure
......@@ -13,10 +14,17 @@
!-----------------------------------------------------------------------
&nampisbio ! biological parameters
!-----------------------------------------------------------------------
nrdttrc = 1 ! time step frequency for biology
wsbio = 2. ! POC sinking speed
wsbio2 = 50. ! Big particles sinking speed
/
!-----------------------------------------------------------------------
&namp4zlim ! parameters for nutrient limitations for PISCES std - ln_p4z
!-----------------------------------------------------------------------
concnno3 = 1.e-6 ! Nitrate half saturation of nanophytoplankton
concdno3 = 3.E-6 ! Nitrate half saturation for diatoms
concnnh4 = 1.E-6 ! NH4 half saturation for phyto
concdnh4 = 3.E-6 ! NH4 half saturation for diatoms
/
!-----------------------------------------------------------------------
&namp5zlim ! parameters for nutrient limitations PISCES QUOTA - ln_p5z
......@@ -29,10 +37,18 @@
!-----------------------------------------------------------------------
&nampisopt ! parameters for optics
!-----------------------------------------------------------------------
sn_par = 'par_fr_gewex_clim_BATS.nc' , 24. , 'fr_par' , .true. , .true. , 'yearly' , '' , '' , ''
cn_dir = './BATS/' ! root directory for the location of the dynamical files
ln_varpar = .true. ! boolean for PAR variable
parlux = 0.43 ! Fraction of shortwave as PAR
/
!-----------------------------------------------------------------------
&namp4zprod ! parameters for phytoplankton growth for PISCES std - ln_p4z
!-----------------------------------------------------------------------
pislopen = 2.0 ! P-I slope
pisloped = 2.0 ! P-I slope for diatoms
fecnm = 60E-6 ! Maximum Fe/C in nanophytoplankton
fecdm = 60E-6 ! Maximum Fe/C in diatoms
/
!-----------------------------------------------------------------------
&namp5zprod ! parameters for phytoplankton growth for PISCES quota- ln_p5z
......@@ -49,6 +65,7 @@
!-----------------------------------------------------------------------
&namp4zmes ! parameters for mesozooplankton for PISCES std - ln_p4z
!-----------------------------------------------------------------------
grazrat2 = 0.5 ! maximal mesozoo grazing rate
/
!-----------------------------------------------------------------------
&namp5zmes ! parameters for mesozooplankton
......@@ -57,6 +74,7 @@
!-----------------------------------------------------------------------
&namp4zzoo ! parameters for microzooplankton for PISCES std - ln_p4z
!-----------------------------------------------------------------------
grazrat = 2.0 ! maximal zoo grazing rate
/
!-----------------------------------------------------------------------
&namp5zzoo ! parameters for microzooplankton
......@@ -65,6 +83,7 @@
!-----------------------------------------------------------------------
&nampisfer ! parameters for iron chemistry
!-----------------------------------------------------------------------
xlam1 = 0.02 ! scavenging rate of Iron by biogenic particles
/
!-----------------------------------------------------------------------
&nampisrem ! parameters for remineralization
......@@ -81,10 +100,13 @@
!-----------------------------------------------------------------------
&nampisbc ! parameters for inputs deposition
!-----------------------------------------------------------------------
sn_dust = 'dust.orca.new' , -1 , 'dust' , .true. , .true. , 'yearly' , '' , '' , ''
ln_ironsed = .true. ! boolean for Fe input from sediments
ln_ironice = .true. ! boolean for Fe input from sea ice
ln_hydrofe = .true. ! boolean for from hydrothermal vents
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
sn_dust = 'DustNew_BATS' , -1 , 'dust' , .true. , .true. , 'yearly' , '' , '' , ''
sn_ironsed = 'pmarge_etopo_BATS', -12. , 'bathy' , .false. , .true. , 'yearly' , '' , '' , ''
!
cn_dir = './BATS/' ! root directory for the location of the dynamical files
ln_ironsed = .true. ! boolean for Fe input from sediments
/
!-----------------------------------------------------------------------
&nampissed ! parameters for sediments mobilization
......@@ -101,7 +123,7 @@
!-----------------------------------------------------------------------
&nampisdmp ! Damping
!-----------------------------------------------------------------------
nn_pisdmp = 5840 ! Frequency of Relaxation
ln_pisdmp = .false. ! Relaxation for some tracers to a mean value
/
!-----------------------------------------------------------------------
&nampismass ! Mass conservation
......
cfgs/C1D/EXP_PISCES_BATS/namelist_pisces_ref 0 → 120000
View file @ e3c1f33f
../../SHARED/namelist_pisces_ref
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/namelist_ref 0 → 120000
View file @ e3c1f33f
../../SHARED/namelist_ref
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/namelist_top_cfg 0 → 100644
View file @ e3c1f33f
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! NEMO/TOP1 : Configuration namelist : used to overwrite defaults values defined in SHARED/namelist_top_ref
!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!-----------------------------------------------------------------------
&namtrc_run ! run information
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc ! tracers definition
!-----------------------------------------------------------------------
jp_bgc = 24
!
ln_pisces = .true.
ln_my_trc = .false.
ln_age = .false.
ln_cfc11 = .false.
ln_cfc12 = .false.
ln_c14 = .false.
!
ln_trcdta = .true. ! Initialisation from data input file (T) or not (F)
ln_trcbc = .true. ! Enables Boundary conditions
! ! ! ! ! !
! ! name ! title of the field ! units ! init ! sbc ! cbc ! obc ! ais
sn_tracer(1) = 'DIC ' , 'Dissolved inorganic Concentration ', 'mol-C/L' , .true. , .false., .false. , .false. , .false.
sn_tracer(2) = 'Alkalini' , 'Total Alkalinity Concentration ', 'eq/L ' , .true. , .false., .false. , .false. , .false.
sn_tracer(3) = 'O2 ' , 'Dissolved Oxygen Concentration ', 'mol-C/L' , .true. , .false., .false., .false. , .false.
sn_tracer(4) = 'CaCO3 ' , 'Calcite Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(5) = 'PO4 ' , 'Phosphate Concentration ', 'mol-C/L' , .true. , .true. , .false. , .false. , .false.
sn_tracer(6) = 'POC ' , 'Small organic carbon Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(7) = 'Si ' , 'Silicate Concentration ', 'mol-C/L' , .true. , .true. , .false. , .false. , .false.
sn_tracer(8) = 'PHY ' , 'Nanophytoplankton Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(9) = 'ZOO ' , 'Microzooplankton Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(10) = 'DOC ' , 'Dissolved organic Concentration ', 'mol-C/L' , .true. , .false., .false. , .false. , .false.
sn_tracer(11) = 'PHY2 ' , 'Diatoms Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(12) = 'ZOO2 ' , 'Mesozooplankton Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(13) = 'DSi ' , 'Diatoms Silicate Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(14) = 'Fer ' , 'Dissolved Iron Concentration ', 'mol-C/L' , .true. , .true. , .false. , .false. , .true.
sn_tracer(15) = 'BFe ' , 'Big iron particles Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(16) = 'GOC ' , 'Big organic carbon Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(17) = 'SFe ' , 'Small iron particles Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(18) = 'DFe ' , 'Diatoms iron Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(19) = 'GSi ' , 'Sinking biogenic Silicate Concentration', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(20) = 'NFe ' , 'Nano iron Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(21) = 'NCHL ' , 'Nano chlorophyl Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(22) = 'DCHL ' , 'Diatoms chlorophyl Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(23) = 'NO3 ' , 'Nitrates Concentration ', 'mol-C/L' , .true. , .true. , .false. , .false. , .false.
sn_tracer(24) = 'NH4 ' , 'Ammonium Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
/
!-----------------------------------------------------------------------
&namage ! AGE
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc_dta ! Initialisation from data input file
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
sn_trcdta(1) = 'Glodapv2.1_annual_l75_BATS.nc', -12. , 'TDIC' , .false. , .true. , 'yearly' , '' , '' , ''
sn_trcdta(2) = 'Glodapv2.1_annual_l75_BATS.nc', -12. , 'Alkalini', .false. , .true. , 'yearly' , '' , '' , ''
sn_trcdta(3) = 'WOA2009_monthly_l75_BATS.nc' , -1. , 'O2' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcdta(5) = 'WOA2009_monthly_l75_BATS.nc' , -1. , 'PO4' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcdta(7) = 'WOA2009_monthly_l75_BATS.nc' , -1. , 'Si' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcdta(10) = 'PISCES_monthly_l75_BATS.nc' , -1. , 'DOC' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcdta(14) = 'PISCES_monthly_l75_BATS.nc' , -1. , 'Fer' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcdta(23) = 'WOA2009_monthly_l75_BATS.nc' , -1. , 'NO3' , .true. , .true. , 'yearly' , '' , '' , ''
!
cn_dir = './BATS/' ! root directory for the location of the data files
!
rn_trfac(1) = 1.0e-06 ! multiplicative factor
rn_trfac(2) = 1.0e-06 ! - - - -
rn_trfac(3) = 44.6e-06 ! - - - -
rn_trfac(5) = 117.0e-06 ! - - - -
rn_trfac(7) = 1.0e-06 ! - - - -
rn_trfac(10) = 1.0e-06 ! - - - -
rn_trfac(14) = 1.0e-06 ! - - - -
rn_trfac(23) = 7.3125e-06 ! - - - -
/
!-----------------------------------------------------------------------
&namtrc_adv ! advection scheme for passive tracer (default: NO selection)
!-----------------------------------------------------------------------
ln_trcadv_OFF = .true. ! No advection
/
!-----------------------------------------------------------------------
&namtrc_ldf ! lateral diffusion scheme for passive tracer (default: NO selection)
!-----------------------------------------------------------------------
ln_trcldf_OFF = .true. ! No lateral diffusion
/
!-----------------------------------------------------------------------
&namtrc_rad ! treatment of negative concentrations
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc_snk ! sedimentation of particles
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc_opt ! light availability in the water column
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
!-----------------------------------------------------------------------
&namtrc_dmp ! passive tracer newtonian damping
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc_ice ! Representation of sea ice growth & melt effects
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc_trd ! diagnostics on tracer trends ('key_trdtrc')
!----------------------------------------------------------------------
/
!----------------------------------------------------------------------
&namtrc_bc ! data for boundary conditions
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
sn_trcsbc(5) = 'DustNew_BATS' , -1 , 'dustpo4' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcsbc(7) = 'DustNew_BATS' , -1 , 'dustsi' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcsbc(14) = 'DustNew_BATS' , -1 , 'dustfer' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcsbc(23) = 'Ndep_BATS' , -12 , 'ndep2' , .false. , .true. , 'yearly' , '' , '' , ''
rn_trsfac(5) = 3.774194e-03 ! ( 1E-3 / 31. * 117 )
rn_trsfac(7) = 9.572954e-03 ! ( 0.269 / 28.1 )
rn_trsfac(14) = 6.2667860e-04 ! ( 0.035 / 55.85 )
rn_trsfac(23) = 5.2232143e-01 ! ( From kgN m-2 s-1 to molC l-1 ====> zfact = 7.3125/14 )
rn_sbc_time = 1. ! Time scaling factor for SBC and CBC data (seconds in a day)
/
!----------------------------------------------------------------------
&namtrc_bdy ! Setup of tracer boundary conditions
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc_ais ! Representation of Antarctic Ice Sheet tracers supply
!-----------------------------------------------------------------------
/
cfgs/C1D/EXP_PISCES_BATS/namelist_top_ref 0 → 120000
View file @ e3c1f33f
../../SHARED/namelist_top_ref
\ No newline at end of file