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  • nemo/nemo
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  • hatfield/nemo
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cfgs/GYRE_PISCES/EXPREF/file_def_nemo.xml
View file @ d7ad8c2e
<?xml version="1.0"?>
<!--
============================================================================================================
= output files definition =
......@@ -8,17 +10,17 @@
<file_definition type="multiple_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4">
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="oce_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="oce_1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="oce_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="oce_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="oce_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="oce_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."/> <!-- 1d files -->
<file_group id="3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file_group id="oce_1d" output_freq="1d" output_level="10" enabled=".TRUE."/> <!-- 1d files -->
<file_group id="oce_3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="oce_5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file1" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="toce" name="votemper" />
......@@ -32,16 +34,16 @@
<field field_ref="qt" name="sohefldo" />
<field field_ref="mldr10_1" name="somxl010" />
<field field_ref="mldkz5" name="somixhgt" />
<field field_ref="utau" name="sozotaux" />
<field field_ref="vtau" name="sometauy" />
</file>
<file id="file2" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="uoce" name="vozocrtx" />
<field field_ref="utau" name="sozotaux" />
</file>
<file id="file3" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="voce" name="vomecrty" />
<field field_ref="vtau" name="sometauy" />
</file>
<file id="file4" name_suffix="_grid_W" description="ocean W grid variables" >
......@@ -50,53 +52,55 @@
</file>
<file id="file5" name_suffix="_ptrc_T" description="lobster sms variables" >
<field field_ref="DET" />
<field field_ref="ZOO" />
<field field_ref="DIC" />
<field field_ref="Alkalini" />
<field field_ref="O2" />
<field field_ref="POC" />
<field field_ref="PHY" />
<field field_ref="ZOO" />
<field field_ref="DOC" />
<field field_ref="THETANANO"/>
<field field_ref="NO3" />
<field field_ref="NH4" />
<field field_ref="DOM" />
<field field_ref="Fer" />
</file>
</file_group>
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="oce_1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
<file_group id="oce_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="oce_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="oce_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="oce_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
<file_group id="oce_1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
<file id="file6" name_suffix="_diad_T" description="additional lobster diagnostics" >
<field field_ref="FNO3PHY" />
<field field_ref="FNH4PHY" />
<field field_ref="FNH4NO3" />
<field field_ref="TNO3PHY" />
<field field_ref="TNH4PHY" />
<field field_ref="TPHYDOM" />
<field field_ref="TPHYNH4" />
<field field_ref="TPHYZOO" />
<field field_ref="TPHYDET" />
<field field_ref="TDETZOO" />
<field field_ref="TDETSED" />
<field field_ref="TZOODET" />
<field field_ref="TZOOBOD" />
<field field_ref="TZOONH4" />
<field field_ref="TZOODOM" />
<field field_ref="TNH4NO3" />
<field field_ref="TDOMNH4" />
<field field_ref="TDETNH4" />
<field field_ref="TPHYTOT" />
<field field_ref="TZOOTOT" />
<field field_ref="SEDPOC" />
<file id="file11" name_suffix="_diad_T" description="additional lobster diagnostics" >
<field field_ref="PH" />
<field field_ref="CO3" />
<field field_ref="CO3sat" />
<field field_ref="PAR" />
<field field_ref="PPPHYN" />
<field field_ref="xfracal" />
<field field_ref="GRAZ1" />
<field field_ref="EPC100" />
<field field_ref="Cflx" />
<field field_ref="Oflx" />
<field field_ref="Kg" />
<field field_ref="Dpco2" />
<field field_ref="Dpo2" />
<field field_ref="Heup" />
<field field_ref="Nfix" />
<field field_ref="MuN" />
<field field_ref="LNnut" />
<field field_ref="LNlight" />
<field field_ref="Sdenit" />
</file>
</file_group>
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="oce_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="oce_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="oce_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
cfgs/GYRE_PISCES/EXPREF/namelist_cfg
View file @ d7ad8c2e
......@@ -10,10 +10,7 @@
!! namcfg parameters of the configuration (default: user defined GYRE)
!! namwad Wetting and drying (default: OFF)
!! namtsd data: temperature & salinity (default: OFF)
!! namcrs coarsened grid (for outputs and/or TOP) (ln_crs =T)
!! namc1d 1D configuration options (ln_c1d =T)
!! namc1d_dyndmp 1D newtonian damping applied on currents (ln_c1d =T)
!! namc1d_uvd 1D data (currents) (ln_c1d =T)
!!======================================================================
!
!-----------------------------------------------------------------------
......@@ -46,9 +43,7 @@
!-----------------------------------------------------------------------
&namdom ! time and space domain
!-----------------------------------------------------------------------
ln_linssh = .true. ! =T linear free surface ==>> model level are fixed in time
!
rn_Dt = 7200. ! time step for the dynamics
rn_Dt = 14400. ! time step for the dynamics
/
!!======================================================================
!! *** Surface Boundary Condition namelists *** !!
......@@ -177,6 +172,8 @@
&namdyn_spg ! surface pressure gradient (default: NO selection)
!-----------------------------------------------------------------------
ln_dynspg_ts = .true. ! split-explicit free surface
nn_bt_flt = 3 ! Time filtering with dissipative Forward Backward
rn_bt_alpha = 0.07 ! Dissipative Forward Backward parameter
/
!-----------------------------------------------------------------------
&namdyn_ldf ! lateral diffusion on momentum (default: NO selection)
......@@ -220,13 +217,10 @@
!! *** Diagnostics namelists *** !!
!! !!
!! namtrd dynamics and/or tracer trends (default: OFF)
!! namhsb Heat and salt budgets (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namflo float parameters (default: OFF)
!! nam_diadct transports through some sections (default: OFF)
!! nam_dia25h 25h Mean Output (default: OFF)
!! namnc4 netcdf4 chunking and compression settings ("key_netcdf4")
!! namnc4 netcdf4 chunking and compression settings
!!======================================================================
!
!!======================================================================
......
cfgs/GYRE_PISCES/EXPREF/namelist_pisces_cfg
View file @ d7ad8c2e
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! PISCES (key_pisces) reference namelist (see below for key_pisces_reduced)
!! 1 - air-sea exchange (nampisext)
!! 2 - biological parameters (nampisbio)
!! 3 - parameters for nutrient limitations (nampislim)
!! 4 - parameters for phytoplankton (nampisprod,nampismort)
!! 5 - parameters for zooplankton (nampismes,nampiszoo)
!! 6 - parameters for remineralization (nampisrem)
!! 7 - parameters for calcite chemistry (nampiscal)
!! 8 - parameters for inputs deposition (nampissed)
!! 11 - Damping (nampisdmp)
!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!-----------------------------------------------------------------------
&nampismod ! Model used
!-----------------------------------------------------------------------
ln_p4z = .false.
ln_p2z = .true.
ln_p2z = .true. ! PISCES SIMPLIFIED model used
ln_p4z = .false. ! PISCES model used
ln_p5z = .false. ! PISCES QUOTA model used
/
!-----------------------------------------------------------------------
&nampisext ! air-sea exchange
......@@ -29,11 +18,11 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namp4zice ! parameters for nutrient limitations for PISCES std - ln_p4z
&namp4zlim ! parameters for nutrient limitations for PISCES std - ln_p4z
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namp5zice ! parameters for nutrient limitations PISCES QUOTA - ln_p5z
&namp5zlim ! parameters for nutrient limitations PISCES QUOTA - ln_p5z
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
......@@ -43,6 +32,7 @@
!-----------------------------------------------------------------------
&nampisopt ! parameters for optics
!-----------------------------------------------------------------------
ln_varpar = .false.
/
!-----------------------------------------------------------------------
&namp4zprod ! parameters for phytoplankton growth for PISCES std - ln_p4z
......@@ -85,73 +75,35 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampispoc ! parameters for organic particles
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampiscal ! parameters for Calcite chemistry
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampissbc ! parameters for inputs deposition
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampislig ! Namelist parameters for ligands, nampislig
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampisice ! Prescribed sea ice tracers
&nampisdiaz ! Namelist parameters for diazotrophy
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampisdmp ! Damping
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampismass ! Mass conservation
!-----------------------------------------------------------------------
/
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! PISCES reduced (key_pisces_reduced, ex LOBSTER) : namelists
!! 1 - biological parameters for phytoplankton (namlobphy)
!! 2 - biological parameters for nutrients (namlobnut)
!! 3 - biological parameters for zooplankton (namlobzoo)
!! 4 - biological parameters for detritus (namlobdet)
!! 5 - biological parameters for DOM (namlobdom)
!! 6 - parameters from aphotic layers to sediment (namlobsed)
!! 7 - general coefficients (namlobrat)
!! 8 - optical parameters (namlobopt)
!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!-----------------------------------------------------------------------
&namlobphy ! biological parameters for phytoplankton
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobnut ! biological parameters for nutrients
&nampispoc ! parameters for organic particles
!-----------------------------------------------------------------------
jcpoc = 5 ! Number of lability classes
/
!-----------------------------------------------------------------------
&namlobzoo ! biological parameters for zooplankton
&nampiscal ! parameters for Calcite chemistry
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobdet ! biological parameters for detritus
&nampisbc ! parameters for inputs deposition
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobdom ! biological parameters for DOM
&nampissed ! parameters for sediments mobilization
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobsed ! parameters from aphotic layers to sediment
&nampislig ! Namelist parameters for ligands, nampislig
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobrat ! general coefficients
&nampisice ! Prescribed sea ice tracers
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobopt ! optical parameters
&nampisdmp ! Damping
!-----------------------------------------------------------------------
/
cfgs/GYRE_PISCES/EXPREF/namelist_top_cfg
View file @ d7ad8c2e
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! NEMO/TOP : Configuration namelist : used to overwrite defaults values defined in SHARED/namelist_top_ref
!! NEMO/TOP1 : Configuration namelist : used to overwrite defaults values defined in SHARED/namelist_top_ref
!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!-----------------------------------------------------------------------
&namtrc_run ! run information
......@@ -8,22 +8,28 @@
!-----------------------------------------------------------------------
&namtrc ! tracers definition
!-----------------------------------------------------------------------
jp_bgc = 6
!
jp_bgc = 9
!
ln_pisces = .true.
ln_my_trc = .false.
ln_age = .false.
ln_cfc11 = .false.
ln_cfc12 = .false.
ln_c14 = .false.
ln_my_trc = .false.
!_____________!__________!________________________________!______________!________________!
! ! name ! title of the field ! units ! init from file !
sn_tracer(1) = 'DET' , 'Detritus ' , 'mmole-N/m3' , .false.
sn_tracer(2) = 'ZOO' , 'Zooplankton concentration ' , 'mmole-N/m3' , .false.
sn_tracer(3) = 'PHY' , 'Phytoplankton concentration' , 'mmole-N/m3' , .false.
sn_tracer(4) = 'NO3' , 'Nitrate concentration ' , 'mmole-N/m3' , .false.
sn_tracer(5) = 'NH4' , 'Ammonium concentration ' , 'mmole-N/m3' , .false.
sn_tracer(6) = 'DOM' , 'Dissolved organic matter ' , 'mmole-N/m3' , .false.
!
ln_trcdta = .false. ! Initialisation from data input file (T) or not (F)
ln_trcbc = .false. ! Enables Boundary conditions
! ! ! ! ! !
! ! name ! title of the field ! units ! init ! sbc ! cbc ! obc ! ais
sn_tracer(1) = 'DIC ' , 'Dissolved inorganic Concentration ', 'mol-C/L' , .true. , .false., .true. , .false. , .false.
sn_tracer(2) = 'Alkalini' , 'Total Alkalinity Concentration ', 'eq/L ' , .true. , .false., .true. , .false. , .false.
sn_tracer(3) = 'O2 ' , 'Dissolved Oxygen Concentration ', 'mol-C/L' , .true. , .false., .false., .false. , .false.
sn_tracer(4) = 'POC ' , 'Small organic carbon Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(5) = 'PHY ' , 'Nanophytoplankton Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(6) = 'ZOO ' , 'Microzooplankton Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
sn_tracer(7) = 'DOC ' , 'Dissolved organic Concentration ', 'mol-C/L' , .true. , .false., .true. , .false. , .false.
sn_tracer(8) = 'NO3 ' , 'Nitrates Concentration ', 'mol-C/L' , .true. , .true. , .true. , .false. , .false.
sn_tracer(9) = 'Fer ' , 'Dissolved Iron Concentration ', 'mol-C/L' , .true. , .true. , .true. , .false. , .true.
/
!-----------------------------------------------------------------------
&namage ! AGE
......@@ -32,13 +38,15 @@
!-----------------------------------------------------------------------
&namtrc_dta ! Initialisation from data input file
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
/
!-----------------------------------------------------------------------
&namtrc_adv ! advection scheme for passive tracer (default: NO selection)
!-----------------------------------------------------------------------
ln_trcadv_fct = .true. ! FCT scheme
nn_fct_h = 2 ! =2/4, horizontal 2nd / 4th order
nn_fct_v = 2 ! =2/4, vertical 2nd / COMPACT 4th order
ln_trcadv_fct = .true. ! FCT scheme
nn_fct_h = 2 ! =2/4, horizontal 2nd / 4th order
nn_fct_v = 2 ! =2/4, vertical 2nd / COMPACT 4th order
/
!-----------------------------------------------------------------------
&namtrc_ldf ! lateral diffusion scheme for passive tracer (default: NO selection)
......@@ -48,10 +56,18 @@
!-----------------------------------------------------------------------
&namtrc_rad ! treatment of negative concentrations
!-----------------------------------------------------------------------
ln_trcrad = .false. ! artificially correct negative concentrations (T) or not (F)
/
!-----------------------------------------------------------------------
&namtrc_dmp ! passive tracer newtonian damping (ln_trcdmp=T)
&namtrc_snk ! sedimentation of particles
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc_opt ! light availability in the water column
!-----------------------------------------------------------------------
ln_varpar = .false. ! Read PAR from file
/
!-----------------------------------------------------------------------
&namtrc_dmp ! passive tracer newtonian damping
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
......@@ -65,8 +81,14 @@
!----------------------------------------------------------------------
&namtrc_bc ! data for boundary conditions
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
/
!----------------------------------------------------------------------
&namtrc_bdy ! Setup of tracer boundary conditions
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc_ais ! Representation of Antarctic Ice Sheet tracers supply
!-----------------------------------------------------------------------
/
cfgs/GYRE_PISCES/cpp_GYRE_PISCES.fcm
View file @ d7ad8c2e
bld::tool::fppkeys key_top key_linssh key_xios
bld::tool::fppkeys key_top key_linssh key_vco_1d key_xios
cfgs/ORCA2_ICE_ABL/EXPREF/context_nemo.xml deleted 100644 → 0
View file @ 465ac38c
<!--
==============================================================================================
NEMO context
==============================================================================================
-->
<context id="nemo">
<!-- $id$ -->
<!-- Fields definition -->
<field_definition src="./field_def_nemo-oce.xml"/> <!-- NEMO ocean dynamics -->
<field_definition src="./field_def_nemo-ice.xml"/> <!-- NEMO sea-ice model -->
<!-- Files definition -->
<file_definition src="./file_def_nemo-oce.xml"/> <!-- NEMO ocean dynamics -->
<file_definition src="./file_def_nemo-ice.xml"/> <!-- NEMO sea-ice model -->
<!--
============================================================================================================
= grid definition = = DO NOT CHANGE =
============================================================================================================
-->
<axis_definition>
<axis id="deptht" long_name="Vertical T levels" unit="m" positive="down" />
<axis id="depthu" long_name="Vertical U levels" unit="m" positive="down" />
<axis id="depthv" long_name="Vertical V levels" unit="m" positive="down" />
<axis id="depthw" long_name="Vertical W levels" unit="m" positive="down" />
<axis id="profsed" long_name="Vertical S levels" unit="cm" positive="down" />
<axis id="nfloat" long_name="Float number" unit="-" />
<axis id="icbcla" long_name="Iceberg class" unit="1" />
<axis id="ncatice" long_name="Ice category" unit="1" />
<axis id="iax_20C" long_name="20 degC isotherm" unit="degC" />
<axis id="iax_28C" long_name="28 degC isotherm" unit="degC" />
<!-- ABL vertical axis definition -->
<axis id="ght_abl" long_name="ABL Vertical T levels" unit="m" positive="up" />
<axis id="ghw_abl" long_name="ABL Vertical W levels" unit="m" positive="up" />
</axis_definition>
<domain_definition src="./domain_def_nemo.xml"/>
<grid_definition src="./grid_def_nemo.xml"/>
</context>
cfgs/ORCA2_ICE_ABL/EXPREF/file_def_nemo-oce.xml deleted 100644 → 0
View file @ 465ac38c
<?xml version="1.0"?>
<!--
============================================================================================================
= output files definition =
= Define your own filesfor ocean dynamics context =
= put the variables you want... =
============================================================================================================
-->
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="5d" min_digits="4">
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file11" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="e3t" />
<field field_ref="toce" name="thetao" />
<field field_ref="soce" name="so" />
<field field_ref="sst" name="tos" />
<field field_ref="sss" name="sos" />
<field field_ref="ssh" name="zos" />
<field field_ref="mldkz5" />
<field field_ref="mldr10_1" />
<field field_ref="sbt" />
<field field_ref="heatc" name="heatc" />
<field field_ref="saltc" name="saltc" />
<field field_ref="empmr" name="wfo" />
<field field_ref="qsr_oce" name="qsr_oce" />
<field field_ref="qns_oce" name="qns_oce" />
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
<!-- ice and snow -->
<field field_ref="snowpre" />
</file>
<file id="file12" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="e3u" />
<field field_ref="ssu" name="uos" />
<field field_ref="uoce" name="uo" />
<field field_ref="utau" name="tauuo" />
</file>
<file id="file13" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="e3v" />
<field field_ref="ssv" name="vos" />
<field field_ref="voce" name="vo" />
<field field_ref="vtau" name="tauvo" />
</file>
<file id="file14" name_suffix="_grid_ABL" description="ABL grid variables" >
<field field_ref="u_abl" />
<field field_ref="v_abl" />
<field field_ref="t_abl" />
<field field_ref="q_abl" />
<field field_ref="uvz1_abl" />
<field field_ref="tz1_abl" />
<field field_ref="qz1_abl" />
<field field_ref="uvz1_dta" />
<field field_ref="tz1_dta" />
<field field_ref="qz1_dta" />
<field field_ref="pblh" />
</file>
</file_group>
</file_definition>
cfgs/ORCA2_ICE_ABL/cpp_ORCA2_ICE_ABL.fcm deleted 100644 → 0
View file @ 465ac38c
bld::tool::fppkeys key_si3 key_xios key_qco
cfgs/ORCA2_ICE_PISCES/EXPREF/context_nemo.xml
View file @ d7ad8c2e
......@@ -4,7 +4,7 @@
==============================================================================================
-->
<context id="nemo">
<!-- $id$ -->
<variable_definition>
<!-- Year/Month/Day of time origin for NetCDF files; defaults to 1800-01-01 -->
<variable id="ref_year" type="int"> 1900 </variable>
......@@ -28,7 +28,6 @@
<file_definition src="./file_def_nemo-ice.xml"/> <!-- NEMO sea-ice model -->
<file_definition src="./file_def_nemo-pisces.xml"/> <!-- NEMO ocean biology -->
<!-- Axis definition -->
<axis_definition src="./axis_def_nemo.xml"/>
......@@ -38,5 +37,4 @@
<!-- Grids definition -->
<grid_definition src="./grid_def_nemo.xml"/>
</context>
cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-ice.xml
View file @ d7ad8c2e
<?xml version="1.0"?>
<!-- $id$ -->
<!--
============================================================================================================
......@@ -11,8 +10,8 @@
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="1mo" min_digits="4">
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file21" name_suffix="_icemod" description="ice variables" enabled=".true." >
<file_group id="ice_5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file101" name_suffix="_icemod" description="ice variables" enabled=".true." >
<!-- ice mask -->
<field field_ref="icemask" name="simsk" />
......@@ -89,7 +88,7 @@
</file>
<file id="file22" name_suffix="_SBC_scalar" description="scalar variables" enabled=".true." >
<file id="file102" name_suffix="_SBC_scalar" description="scalar variables" enabled=".true." >
<!-- global contents -->
<field field_ref="ibgvol_tot" name="ibgvol_tot" />
<field field_ref="sbgvol_tot" name="sbgvol_tot" />
......@@ -116,17 +115,17 @@
</file_group>
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="ice_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="ice_1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="ice_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="ice_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="ice_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="ice_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file_group id="ice_1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<!-- To compute transport through straits : need to read ice mask at ice iteration at freq_offset = 1mo - nn_fsbc
<file id="file23" name_suffix="_strait_ice" description="transport variables through straits" >
<file id="file111" name_suffix="_strait_ice" description="transport variables through straits" >
<field field_ref="strait_mifl" name="simassacrossline" freq_offset="1mo-4ts" />
<field field_ref="strait_msfl" name="snmassacrossline" freq_offset="1mo-4ts" />
<field field_ref="strait_arfl" name="siareaacrossline" freq_offset="1mo-4ts" />
......@@ -135,14 +134,14 @@
</file_group>
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."/> <!-- real yearly files -->
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="ice_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="ice_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="ice_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="ice_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="ice_1y" output_freq="1y" output_level="10" enabled=".TRUE."/> <!-- real yearly files -->
<file_group id="ice_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="ice_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="ice_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<!-- To compute transport through straits : need to read ice mask at ice iteration at freq_offset = - nn_fsbc + 1
<file id="maskMFO" name="maskMFO" enabled="true" mode="read" output_freq="1mo" cyclic="true" >
......
cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-oce.xml
View file @ d7ad8c2e
......@@ -10,8 +10,8 @@
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="1mo" min_digits="4">
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file11" name_suffix="_grid_T" description="ocean T grid variables" >
<file_group id="oce_5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file1" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="e3t" />
<field field_ref="toce" name="thetao" operation="instant" freq_op="5d" > @toce_e3t / @e3t </field>
<field field_ref="soce" name="so" operation="instant" freq_op="5d" > @soce_e3t / @e3t </field>
......@@ -34,17 +34,20 @@
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="utau" name="tauuo" />
<field field_ref="vtau" name="tauvo" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
<!-- ice and snow -->
<field field_ref="snowpre" />
<field field_ref="snowpre" />
<field field_ref="berg_melt" />
<!-- <field field_ref="berg_melt_basins" /> -->
</file>
<file id="file12" name_suffix="_grid_U" description="ocean U grid variables" >
<file id="file2" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="e3u" />
<field field_ref="ssu" name="uos" />
<field field_ref="uoce" name="uo" operation="instant" freq_op="5d" > @uoce_e3u / @e3u </field>
<field field_ref="utau" name="tauuo" />
<field field_ref="uocetr_eff" name="uocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="u_masstr" name="vozomatr" />
......@@ -52,11 +55,10 @@
<field field_ref="u_salttr" name="sozosatr" />
</file>
<file id="file13" name_suffix="_grid_V" description="ocean V grid variables" >
<file id="file3" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="e3v" />
<field field_ref="ssv" name="vos" />
<field field_ref="voce" name="vo" operation="instant" freq_op="5d" > @voce_e3v / @e3v </field>
<field field_ref="vtau" name="tauvo" />
<field field_ref="vocetr_eff" name="vocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="v_masstr" name="vomematr" />
......@@ -64,7 +66,7 @@
<field field_ref="v_salttr" name="somesatr" />
</file>
<file id="file14" name_suffix="_grid_W" description="ocean W grid variables" >
<file id="file4" name_suffix="_grid_W" description="ocean W grid variables" >
<field field_ref="e3w" />
<field field_ref="woce" name="wo" />
<field field_ref="avt" name="difvho" />
......@@ -78,7 +80,7 @@
<field field_ref="av_ratio" name="av_ratio" />
</file>
<file id="file15" name_suffix="_scalar" description="scalar variables" >
<file id="file5" name_suffix="_scalar" description="scalar variables" >
<!-- global drifts (conservation checks) -->
<field field_ref="bgtemper" name="bgtemper" />
<field field_ref="bgsaline" name="bgsaline" />
......@@ -105,9 +107,9 @@
</file_group>
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file_group id="oce_1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file id="file16" name_suffix="_diaptr2D" description="zonal mean variables" >
<file id="file11" name_suffix="_diaptr2D" description="zonal mean variables" >
<field field_ref="sophtove" name="htovovrt" grid_ref="grid_ptr_T_2D" />
<field field_ref="sopstove" name="sltovovrt" grid_ref="grid_ptr_T_2D" />
<field field_ref="sophtgyre" name="htovgyre" grid_ref="grid_ptr_T_2D" />
......@@ -125,7 +127,7 @@
</file>
<file id="file17" name_suffix="_diaptr3D" description="zonal mean variables" >
<file id="file12" name_suffix="_diaptr3D" description="zonal mean variables" >
<field field_ref="zomsf" name="msftyz" grid_ref="grid_ptr_W_3D" />
<field field_ref="zotem" name="znltem" grid_ref="grid_ptr_T_3D" />
<field field_ref="zosal" name="znlsal" grid_ref="grid_ptr_T_3D" />
......@@ -133,14 +135,14 @@
</file>
<!--
<file id="file18" name_suffix="_strait_oce" description="transport variables through straits" >
<file id="file13" name_suffix="_strait_oce" description="transport variables through straits" >
<field field_ref="masstr_strait" name="mfo" />
</file>
-->
</file_group>
<file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
<file_group id="oce_1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
</file_group>
<!-- To compute transport through straits : need to read mask file ( every month is the best otherwise costly )
......@@ -153,18 +155,18 @@
-->
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="oce_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="oce_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="oce_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="oce_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="oce_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="oce_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="oce_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="oce_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="oce_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="oce_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="oce_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="oce_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
......
cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-pisces.xml
View file @ d7ad8c2e
......@@ -10,9 +10,9 @@
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="1mo" min_digits="4">
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file_group id="trc_5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file31" name_suffix="_bioscalar" description="pisces sms variables" >
<file id="file201" name_suffix="_bioscalar" description="pisces sms variables" >
<field field_ref="tdenit" name="tdenit" unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field>
<field field_ref="tnfix" name="tnfix" unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field>
<field field_ref="tcflx" name="tcflx" unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
......@@ -29,9 +29,9 @@
</file_group>
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file_group id="trc_1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file id="file32" name_suffix="_ptrc_T" description="pisces sms variables" >
<file id="file211" name_suffix="_ptrc_T" description="pisces sms variables" >
<field field_ref="DIC" name="DIC" operation="average" freq_op="1mo" > @DIC_e3t / @e3t </field>
<field field_ref="Alkalini" name="Alkalini" operation="average" freq_op="1mo" > @Alkalini_e3t / @e3t </field>
<field field_ref="O2" name="O2" operation="average" freq_op="1mo" > @O2_e3t / @e3t </field>
......@@ -43,16 +43,16 @@
<field field_ref="NO3" name="NO3" operation="average" freq_op="1mo" > @NO3_e3t / @e3t </field>
</file>
<file id="file33" name_suffix="_diad_T" description="additional pisces diagnostics" >
<file id="file212" name_suffix="_diad_T" description="additional pisces diagnostics" >
<field field_ref="Cflx" />
<field field_ref="Dpco2" />
</file>
</file_group>
<file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
<file_group id="trc_1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
<file id="file34" name_suffix="_ptrc_T" description="pisces sms variables" >
<file id="file221" name_suffix="_ptrc_T" description="pisces sms variables" >
<field field_ref="DIC" name="DIC" operation="average" freq_op="1y" > @DIC_e3t / @e3t </field>
<field field_ref="Alkalini" name="Alkalini" operation="average" freq_op="1y" > @Alkalini_e3t / @e3t </field>
<field field_ref="O2" name="O2" operation="average" freq_op="1y" > @O2_e3t / @e3t </field>
......@@ -79,7 +79,7 @@
<field field_ref="NH4" name="NH4" operation="average" freq_op="1y" > @NH4_e3t / @e3t </field>
</file>
<file id="file35" name_suffix="_diad_T" description="additional pisces diagnostics" >
<file id="file222" name_suffix="_diad_T" description="additional pisces diagnostics" >
<field field_ref="PH" />
<field field_ref="PAR" />
<field field_ref="PPPHYN" />
......@@ -108,18 +108,18 @@
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="trc_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="trc_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="trc_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="trc_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="trc_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="trc_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="trc_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="trc_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="trc_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="trc_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="trc_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="trc_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
......
cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_cfg
View file @ d7ad8c2e
......@@ -10,10 +10,7 @@
!! namcfg parameters of the configuration (default: user defined GYRE)
!! namwad Wetting and drying (default: OFF)
!! namtsd data: temperature & salinity (default: OFF)
!! namcrs coarsened grid (for outputs and/or TOP) (ln_crs =T)
!! namc1d 1D configuration options (ln_c1d =T)
!! namc1d_dyndmp 1D newtonian damping applied on currents (ln_c1d =T)
!! namc1d_uvd 1D data (currents) (ln_c1d =T)
!!======================================================================
!
!-----------------------------------------------------------------------
......@@ -27,7 +24,7 @@
!-----------------------------------------------------------------------
&namdom ! time and space domain
!-----------------------------------------------------------------------
rn_Dt = 5400. ! time step for the dynamics and tracer
rn_Dt = 10800. ! time step for the dynamics and tracer
/
!-----------------------------------------------------------------------
&namcfg ! parameters of the configuration (default: use namusr_def in namelist_cfg)
......@@ -78,7 +75,7 @@
!-----------------------------------------------------------------------
&namsbc ! Surface Boundary Condition manager (default: NO selection)
!-----------------------------------------------------------------------
nn_fsbc = 4 ! frequency of SBC module call
nn_fsbc = 2 ! frequency of SBC module call
! (also = the frequency of sea-ice & iceberg model call)
! Type of air-sea fluxes
ln_blk = .true. ! Bulk formulation (T => fill namsbc_blk )
......@@ -117,6 +114,18 @@
!-----------------------------------------------------------------------
&namsbc_abl ! Atmospheric Boundary Layer formulation (ln_abl = T)
!-----------------------------------------------------------------------
cn_dom = 'dom_cfg_abl_L25Z10'
nn_dyn_restore = 2 ! restoring option for dynamical ABL variables: = 0 no restoring
! = 1 equatorial restoring
! = 2 global restoring
! = 1 equatorial restoring
! = 2 global restoring
rn_ldyn_min = 24. ! dynamics nudging magnitude inside the ABL [hour] (~3 rn_Dt)
rn_ldyn_max = 6. ! dynamics nudging magnitude above the ABL [hour] (~1 rn_Dt)
rn_ltra_min = 24. ! tracers nudging magnitude inside the ABL [hour] (~3 rn_Dt)
rn_ltra_max = 6. ! tracers nudging magnitude above the ABL [hour] (~1 rn_Dt)
rn_vfac = 1.
/
!-----------------------------------------------------------------------
&namtra_qsr ! penetrative solar radiation (ln_traqsr =T)
......@@ -125,6 +134,10 @@
ln_qsr_rgb = .true. ! RGB light penetration (Red-Green-Blue)
!
nn_chldta = 1 ! RGB : Chl data (=1) or cst value (=0)
nn_chlprfl = 1 ! Chl vertical profile (nn_chldta = 1)
! 0 = vertical extrapolation of surface data
! 1 = vertical analytical profile deduced from surface data
! 2 = 3D Chl data
cn_dir = './' ! root directory for the chlorophyl data location
!___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
......@@ -306,8 +319,6 @@
! ! time invariant coefficients: aei0 = 1/2 Ue*Le
rn_Ue = 0.03 ! lateral diffusive velocity [m/s] (nn_aht_ijk_t= 0, 10, 20, 30)
rn_Le = 200.e+3 ! lateral diffusive length [m] (nn_aht_ijk_t= 0, 10)
!
ln_ldfeiv_dia =.true. ! diagnose eiv stream function and velocities
/
!-----------------------------------------------------------------------
&namtra_dmp ! tracer: T & S newtonian damping (default: OFF)
......@@ -347,6 +358,8 @@
&namdyn_spg ! surface pressure gradient (default: NO selection)
!-----------------------------------------------------------------------
ln_dynspg_ts = .true. ! split-explicit free surface
nn_bt_flt = 3 ! Time filtering with dissipative Forward Backward
rn_bt_alpha = 0.09 ! Dissipative Forward Backward parameter
/
!-----------------------------------------------------------------------
&namdyn_ldf ! lateral diffusion on momentum (default: NO selection)
......@@ -395,6 +408,10 @@
! ! = 2 add a tke source just at the base of the ML
! ! = 3 as = 1 applied on HF part of the stress (ln_cpl=T)
ln_mxhsw = .false. ! surface mixing length scale = F(wave height)
nn_mxlice = 2 ! type of scaling under sea-ice
! ! = 0 no scaling under sea-ice
! ! = 1 scaling with constant sea-ice thickness
! ! = 2 scaling with mean sea-ice thickness ( only with SI3 sea-ice model )
/
!-----------------------------------------------------------------------
&namzdf_iwm ! internal wave-driven mixing parameterization (ln_zdfiwm =T)
......@@ -417,13 +434,10 @@
!! *** Diagnostics namelists *** !!
!! !!
!! namtrd dynamics and/or tracer trends (default: OFF)
!! namhsb Heat and salt budgets (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namflo float parameters (default: OFF)
!! nam_diadct transports through some sections (default: OFF)
!! nam_dia25h 25h Mean Output (default: OFF)
!! namnc4 netcdf4 chunking and compression settings ("key_netcdf4")
!! namnc4 netcdf4 chunking and compression settings
!!======================================================================
!
!!======================================================================
......
cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_pisces_cfg
View file @ d7ad8c2e
!-----------------------------------------------------------------------
&nampismod ! Model used
!-----------------------------------------------------------------------
ln_p2z = .false. ! PISCES SIMPLIFIED model used
ln_p4z = .true. ! PISCES model used
ln_p5z = .false. ! PISCES QUOTA model used
/
!-----------------------------------------------------------------------
&nampisext ! air-sea exchange
......@@ -71,6 +74,10 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampisdiaz ! Namelist parameters for diazotrophy
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampispoc ! parameters for organic particles
!-----------------------------------------------------------------------
/
......@@ -100,42 +107,5 @@
/
!-----------------------------------------------------------------------
&nampisdmp ! Damping
!-----------------------------------------------------------------------
nn_pisdmp = 5840 ! Frequency of Relaxation
/
!-----------------------------------------------------------------------
&nampismass ! Mass conservation
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobphy ! biological parameters for phytoplankton
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobnut ! biological parameters for nutrients
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobzoo ! biological parameters for zooplankton
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobdet ! biological parameters for detritus
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobdom ! biological parameters for DOM
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobsed ! parameters from aphotic layers to sediment
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobrat ! general coefficients
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobopt ! optical parameters
!-----------------------------------------------------------------------
/
cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_top_cfg
View file @ d7ad8c2e
......@@ -4,7 +4,6 @@
!-----------------------------------------------------------------------
&namtrc_run ! run information
!-----------------------------------------------------------------------
ln_top_euler = .true.
/
!-----------------------------------------------------------------------
&namtrc ! tracers definition
......@@ -93,6 +92,15 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc_opt ! light availability in the water column
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
sn_par = 'par.orca' , 24 , 'fr_par' , .true. , .true. , 'yearly' , '' , '' , ''
cn_dir = './' ! root directory for the location of the dynamical files
ln_varpar = .true. ! Read PAR from file
parlux = 0.43 ! Fraction of shortwave as PAR
!-----------------------------------------------------------------------
&namtrc_dmp ! passive tracer newtonian damping
!-----------------------------------------------------------------------
/
......@@ -113,8 +121,8 @@
sn_trcsbc(7) = 'dust.orca.new' , -1 , 'dustsi' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcsbc(14) = 'dust.orca.new' , -1 , 'dustfer' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcsbc(23) = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly' , '' , '' , ''
rn_trsfac(5) = 7.9258065e-02 ! ( 0.021 / 31. * 117 )
rn_trsfac(7) = 3.1316726e-01 ! ( 8.8 / 28.1 )
rn_trsfac(5) = 3.774194e-03 ! ( 1E-3 / 31. * 117 )
rn_trsfac(7) = 9.572954e-03 ! ( 0.269 / 28.1 )
rn_trsfac(14) = 6.2667860e-04 ! ( 0.035 / 55.85 )
rn_trsfac(23) = 5.2232143e-01 ! ( From kgN m-2 s-1 to molC l-1 ====> zfact = 7.3125/14 )
rn_sbc_time = 1. ! Time scaling factor for SBC and CBC data (seconds in a day)
......@@ -126,7 +134,7 @@
sn_trccbc(10) = 'river.orca' , 120 , 'riverdoc' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trccbc(14) = 'river.orca' , 120 , 'riverdic' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trccbc(23) = 'river.orca' , 120 , 'riverdin' , .true. , .true. , 'yearly' , '' , '' , ''
rn_trcfac(1) = 8.333333e+01 ! ( data in Mg/m2/yr : 1e3/12/ryyss)
rn_trcfac(1) = 8.333333e+01 ! ( data in Mg/yr : 1e3/12)
rn_trcfac(2) = 8.333333e+01 ! ( 1e3 /12 )
rn_trcfac(5) = 3.774193e+03 ! ( 1e3 / 31. * 117 )
rn_trcfac(7) = 3.558719e+01 ! ( 1e3 / 28.1 )
......
cfgs/ORCA2_ICE_PISCES/cpp_ORCA2_ICE_PISCES.fcm
View file @ d7ad8c2e
bld::tool::fppkeys key_si3 key_top key_xios key_qco
bld::tool::fppkeys key_si3 key_top key_xios key_qco key_vco_1d3d
cfgs/ORCA2_OFF_PISCES/EXPREF/context_nemo.xml
View file @ d7ad8c2e
......@@ -4,7 +4,7 @@
==============================================================================================
-->
<context id="nemo">
<!-- $id$ -->
<variable_definition>
<!-- Year/Month/Day of time origin for NetCDF files; defaults to 1800-01-01 -->
<variable id="ref_year" type="int"> 1900 </variable>
......@@ -25,7 +25,6 @@
<!-- Files definition -->
<file_definition src="./file_def_nemo-pisces.xml"/> <!-- NEMO ocean biology -->
<!-- Axis definition -->
<axis_definition src="./axis_def_nemo.xml"/>
......
cfgs/ORCA2_OFF_PISCES/EXPREF/file_def_nemo-pisces.xml
View file @ d7ad8c2e
......@@ -9,15 +9,15 @@
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4">
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="trc_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="trc_1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="trc_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="trc_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="trc_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="trc_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files -->
<file id="file1" name_suffix="_bioscalar" description="pisces sms variables" >
<file_group id="trc_1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files -->
<file id="file201" name_suffix="_bioscalar" description="pisces sms variables" >
<field field_ref="tdenit" name="tdenit" unit="TgN/yr" operation="instant" > tdenit * 14. * 86400. * 365. / 1e12 </field>
<field field_ref="tnfix" name="tnfix" unit="TgN/yr" operation="instant" > tnfix * 14. * 86400. * 365. / 1e12 </field>
<field field_ref="tcflx" name="tcflx" unit="PgC/yr" operation="instant" > tcflx * -1. * 12. * 86400. * 365. / 1e15 </field>
......@@ -32,12 +32,12 @@
</file>
</file_group>
<file_group id="3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."/> <!-- 5d files -->
<file_group id="trc_3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="trc_5d" output_freq="5d" output_level="10" enabled=".TRUE."/> <!-- 5d files -->
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file_group id="trc_1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file id="file2" name_suffix="_ptrc_T" description="pisces sms variables" >
<file id="file211" name_suffix="_ptrc_T" description="pisces sms variables" >
<field field_ref="DIC" />
<field field_ref="Alkalini" />
<field field_ref="O2" />
......@@ -49,20 +49,20 @@
<field field_ref="NO3" />
</file>
<file id="file3" name_suffix="_diad_T" description="additional pisces diagnostics" >
<file id="file212" name_suffix="_diad_T" description="additional pisces diagnostics" >
<field field_ref="Cflx" />
<field field_ref="Dpco2" />
</file>
</file_group>
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="trc_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="trc_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="trc_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="trc_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
<file_group id="trc_1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
<file id="file4" name_suffix="_ptrc_T" description="pisces sms variables" >
<file id="file221" name_suffix="_ptrc_T" description="pisces sms variables" >
<field field_ref="DIC" />
<field field_ref="Alkalini" />
<field field_ref="O2" />
......@@ -89,7 +89,7 @@
<field field_ref="NH4" />
</file>
<file id="file5" name_suffix="_diad_T" description="additional pisces diagnostics" >
<file id="file222" name_suffix="_diad_T" description="additional pisces diagnostics" >
<field field_ref="PH" />
<field field_ref="CO3" />
<field field_ref="CO3sat" />
......@@ -137,9 +137,9 @@
</file>
</file_group>
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="trc_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="trc_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="trc_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
cfgs/ORCA2_OFF_PISCES/EXPREF/namelist_cfg
View file @ d7ad8c2e
......@@ -10,10 +10,7 @@
!! namcfg parameters of the configuration (default: user defined GYRE)
!! namwad Wetting and drying (default: OFF)
!! namtsd data: temperature & salinity (default: OFF)
!! namcrs coarsened grid (for outputs and/or TOP) (ln_crs =T)
!! namc1d 1D configuration options (ln_c1d =T)
!! namc1d_dyndmp 1D newtonian damping applied on currents (ln_c1d =T)
!! namc1d_uvd 1D data (currents) (ln_c1d =T)
!!======================================================================
!
!-----------------------------------------------------------------------
......@@ -31,8 +28,6 @@
!-----------------------------------------------------------------------
&namdom ! time and space domain
!-----------------------------------------------------------------------
ln_linssh = .true. ! =T linear free surface ==>> model level are fixed in time
!
rn_Dt = 21600. ! time step for the dynamics and tracer
/
!-----------------------------------------------------------------------
......@@ -56,21 +51,9 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namcrs ! coarsened grid (for outputs and/or TOP) (ln_crs =T)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namc1d ! 1D configuration options (ln_c1d =T default: PAPA station)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namc1d_dyndmp ! U & V newtonian damping (ln_c1d =T default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namc1d_uvd ! data: U & V currents (ln_c1d =T default: OFF)
!-----------------------------------------------------------------------
/
!!======================================================================
!! *** Surface Boundary Condition namelists *** !!
!! !!
......@@ -325,7 +308,7 @@
sn_sal = 'dyna_grid_T' , 120. , 'vosaline' , .true. , .true. , 'yearly' , '' , '' , ''
sn_mld = 'dyna_grid_T' , 120. , 'somixhgt' , .true. , .true. , 'yearly' , '' , '' , ''
sn_emp = 'dyna_grid_T' , 120. , 'sowaflcd' , .true. , .true. , 'yearly' , '' , '' , ''
sn_fmf = 'dyna_grid_T' , 120. , 'iowaflup' , .true. , .true. , 'yearly' , '' , '' , ''
sn_fwf = 'dyna_grid_T' , 120. , 'iowaflup' , .true. , .true. , 'yearly' , '' , '' , ''
sn_ice = 'dyna_grid_T' , 120. , 'soicecov' , .true. , .true. , 'yearly' , '' , '' , ''
sn_qsr = 'dyna_grid_T' , 120. , 'soshfldo' , .true. , .true. , 'yearly' , '' , '' , ''
sn_wnd = 'dyna_grid_T' , 120. , 'sowindsp' , .true. , .true. , 'yearly' , '' , '' , ''
......@@ -376,13 +359,10 @@
!! *** Diagnostics namelists *** !!
!! !!
!! namtrd dynamics and/or tracer trends (default: OFF)
!! namhsb Heat and salt budgets (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namflo float parameters (default: OFF)
!! nam_diadct transports through some sections (default: OFF)
!! nam_dia25h 25h Mean Output (default: OFF)
!! namnc4 netcdf4 chunking and compression settings ("key_netcdf4")
!! namnc4 netcdf4 chunking and compression settings
!!======================================================================
!
!-----------------------------------------------------------------------
......@@ -390,27 +370,15 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namhsb ! Heat and salt budgets (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namdiu ! Cool skin and warm layer models (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namflo ! float parameters (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nam_diadct ! transports through some sections (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nam_dia25h ! 25h Mean Output (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namnc4 ! netcdf4 chunking and compression settings ("key_netcdf4")
&namnc4 ! netcdf4 chunking and compression settings
!-----------------------------------------------------------------------
/
!!======================================================================
......
cfgs/ORCA2_OFF_PISCES/EXPREF/namelist_pisces_cfg
View file @ d7ad8c2e
!-----------------------------------------------------------------------
&nampismod ! Model used
!-----------------------------------------------------------------------
ln_p2z = .false. ! PISCES SIMPLIFIED model used
ln_p4z = .true. ! PISCES model used
ln_p5z = .false. ! PISCES QUOTA model used
/
!-----------------------------------------------------------------------
&nampisext ! air-sea exchange
......@@ -72,6 +75,10 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampisdiaz ! Namelist parameters for diazotrophy
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nampispoc ! parameters for organic particles
!-----------------------------------------------------------------------
/
......@@ -101,42 +108,5 @@
/
!-----------------------------------------------------------------------
&nampisdmp ! Damping
!-----------------------------------------------------------------------
nn_pisdmp = 1460 ! Frequency of Relaxation
/
!-----------------------------------------------------------------------
&nampismass ! Mass conservation
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobphy ! biological parameters for phytoplankton
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobnut ! biological parameters for nutrients
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobzoo ! biological parameters for zooplankton
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobdet ! biological parameters for detritus
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobdom ! biological parameters for DOM
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobsed ! parameters from aphotic layers to sediment
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobrat ! general coefficients
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namlobopt ! optical parameters
!-----------------------------------------------------------------------
/