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  • nemo/nemo
  • sparonuz/nemo
  • hatfield/nemo
  • extdevs/nemo
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cfgs/AGRIF_DEMO/EXPREF/3_context_nemo.xml
View file @ dd59ced6
......@@ -4,7 +4,7 @@
==============================================================================================
-->
<context id="nemo">
<!-- $id$ -->
<variable_definition>
<!-- Year/Month/Day of time origin for NetCDF files; defaults to 1800-01-01 -->
<variable id="ref_year" type="int"> 1900 </variable>
......@@ -24,7 +24,6 @@
<field_definition src="./field_def_nemo-pisces.xml"/> <!-- NEMO ocean biogeochemical -->
<field_definition src="./field_def_nemo-innerttrc.xml"/> <!-- NEMO ocean inert passive tracer -->
<!-- Files definition -->
<file_definition src="./file_def_nemo-oce.xml"/> <!-- NEMO ocean dynamics -->
<file_definition src="./file_def_nemo-ice.xml"/> <!-- NEMO ocean sea ice -->
......@@ -38,6 +37,5 @@
<!-- Grids definition -->
<grid_definition src="./grid_def_nemo.xml"/>
</context>
cfgs/AGRIF_DEMO/EXPREF/3_namelist_cfg
View file @ dd59ced6
......@@ -10,7 +10,6 @@
!! namcfg parameters of the configuration (default: user defined GYRE)
!! namwad Wetting and drying (default: OFF)
!! namtsd data: temperature & salinity (default: OFF)
!! namcrs coarsened grid (for outputs and/or TOP) (ln_crs =T)
!! namc1d 1D configuration options (ln_c1d =T)
!! namc1d_dyndmp 1D newtonian damping applied on currents (ln_c1d =T)
!! namc1d_uvd 1D data (currents) (ln_c1d =T)
......@@ -28,9 +27,7 @@
!-----------------------------------------------------------------------
&namdom ! space and time domain
!-----------------------------------------------------------------------
ln_linssh = .false. ! =T linear free surface ==>> model level are fixed in time
!
rn_Dt = 450. ! time step for the dynamics (and tracer if nn_acc=0)
rn_Dt = 900. ! time step for the dynamics (and tracer if nn_acc=0)
ln_meshmask = .false. ! =T create a mesh file
/
!-----------------------------------------------------------------------
......@@ -242,7 +239,7 @@
!-----------------------------------------------------------------------
&namdyn_adv ! formulation of the momentum advection (default: NO selection)
!-----------------------------------------------------------------------
ln_dynadv_ubs = .true. ! flux form - 3rd order UBS scheme
ln_dynadv_up3 = .true. ! flux form - 3rd order UBS scheme
/
!-----------------------------------------------------------------------
&namdyn_vor ! Vorticity / Coriolis scheme (default: NO selection)
......@@ -258,6 +255,10 @@
&namdyn_spg ! surface pressure gradient (default: NO selection)
!-----------------------------------------------------------------------
ln_dynspg_ts = .true. ! split-explicit free surface
!MLF nn_bt_flt = 1 ! Time filtering with nn_e width boxcar averaging
!MLF rn_bt_alpha = 0. ! Dissipative Forward Backward parameter
nn_bt_flt = 3 ! Time filtering with dissipative Forward Backward
rn_bt_alpha = 0.09 ! Dissipative Forward Backward parameter
/
!-----------------------------------------------------------------------
&namdyn_ldf ! lateral diffusion on momentum (default: NO selection)
......@@ -308,12 +309,9 @@
!! *** Diagnostics namelists *** !!
!! !!
!! namtrd dynamics and/or tracer trends (default: OFF)
!! namhsb Heat and salt budgets (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namflo float parameters (default: OFF)
!! nam_diadct transports through some sections (default: OFF)
!! nam_dia25h 25h Mean Output (default: OFF)
!! namnc4 netcdf4 chunking and compression settings ("key_netcdf4")
!!======================================================================
!
......
cfgs/AGRIF_DEMO/EXPREF/context_nemo.xml
View file @ dd59ced6
......@@ -4,7 +4,7 @@
==============================================================================================
-->
<context id="nemo">
<!-- $id$ -->
<variable_definition>
<!-- Year/Month/Day of time origin for NetCDF files; defaults to 1800-01-01 -->
<variable id="ref_year" type="int"> 1900 </variable>
......
cfgs/AGRIF_DEMO/EXPREF/file_def_nemo-ice.xml
View file @ dd59ced6
<?xml version="1.0"?>
<!-- $id$ -->
<!--
============================================================================================================
......@@ -11,8 +10,8 @@
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="5d" min_digits="4">
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file21" name_suffix="_icemod" description="ice variables" enabled=".true." >
<file_group id="ice_5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file101" name_suffix="_icemod" description="ice variables" enabled=".true." >
<!-- ice mask -->
<field field_ref="icemask" name="simsk" />
......@@ -86,7 +85,7 @@
</file>
<file id="file22" name_suffix="_SBC_scalar" description="scalar variables" enabled=".true." >
<file id="file102" name_suffix="_SBC_scalar" description="scalar variables" enabled=".true." >
<!-- global contents -->
<field field_ref="ibgvol_tot" name="ibgvol_tot" />
<field field_ref="sbgvol_tot" name="sbgvol_tot" />
......@@ -113,20 +112,20 @@
</file_group>
<file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."/> <!-- real yearly files -->
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="ice_1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="ice_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="ice_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="ice_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="ice_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="ice_1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
<file_group id="ice_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="ice_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="ice_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="ice_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="ice_1y" output_freq="1y" output_level="10" enabled=".TRUE."/> <!-- real yearly files -->
<file_group id="ice_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="ice_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="ice_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
cfgs/AGRIF_DEMO/EXPREF/file_def_nemo-innerttrc.xml
View file @ dd59ced6
......@@ -9,38 +9,38 @@
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4">
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="trc_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="trc_1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="trc_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="trc_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="trc_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="trc_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files -->
<file_group id="trc_1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files -->
</file_group>
<file_group id="3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file40" name_suffix="_trc" description="passive tracers variables" >
<file id="file201" name_suffix="_trc" description="passive tracers variables" >
<field field_ref="Age" name="Age" operation="average" freq_op="5d" > @Age_e3t / @e3t </field>
</file>
</file_group>
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file_group id="trc_1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
</file_group>
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="trc_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="trc_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="trc_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="trc_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
<file id="file41" name_suffix="_trc" description="passive tracers variables" >
<file_group id="trc_1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
<file id="file211" name_suffix="_trc" description="passive tracers variables" >
<field field_ref="Age" name="Age" operation="average" freq_op="1y" > @Age_e3t / @e3t </field>
</file>
</file_group>
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="trc_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="trc_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="trc_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
cfgs/AGRIF_DEMO/EXPREF/file_def_nemo-oce.xml
View file @ dd59ced6
......@@ -10,8 +10,8 @@
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="5d" min_digits="4">
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file11" name_suffix="_grid_T" description="ocean T grid variables" >
<file_group id="oce_5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file1" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="e3t" />
<field field_ref="toce" name="thetao" operation="instant" freq_op="5d" > @toce_e3t / @e3t </field>
<field field_ref="soce" name="so" operation="instant" freq_op="5d" > @soce_e3t / @e3t </field>
......@@ -34,17 +34,18 @@
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="utau" name="tauuo" />
<field field_ref="vtau" name="tauvo" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
<!-- ice and snow -->
<field field_ref="snowpre" />
</file>
<file id="file12" name_suffix="_grid_U" description="ocean U grid variables" >
<file id="file2" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="e3u" />
<field field_ref="ssu" name="uos" />
<field field_ref="uoce" name="uo" operation="instant" freq_op="5d" > @uoce_e3u / @e3u </field>
<field field_ref="utau" name="tauuo" />
<field field_ref="uocetr_eff" name="uocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="u_masstr" name="vozomatr" />
......@@ -52,11 +53,10 @@
<field field_ref="u_salttr" name="sozosatr" />
</file>
<file id="file13" name_suffix="_grid_V" description="ocean V grid variables" >
<file id="file3" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="e3v" />
<field field_ref="ssv" name="vos" />
<field field_ref="voce" name="vo" operation="instant" freq_op="5d" > @voce_e3v / @e3v </field>
<field field_ref="vtau" name="tauvo" />
<field field_ref="vocetr_eff" name="vocetr_eff" />
<!-- available with diaar5 -->
<field field_ref="v_masstr" name="vomematr" />
......@@ -64,7 +64,7 @@
<field field_ref="v_salttr" name="somesatr" />
</file>
<file id="file14" name_suffix="_grid_W" description="ocean W grid variables" >
<file id="file4" name_suffix="_grid_W" description="ocean W grid variables" >
<field field_ref="e3w" />
<field field_ref="woce" name="wo" />
<field field_ref="avt" name="difvho" />
......@@ -82,24 +82,24 @@
</file_group>
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file_group id="oce_1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
</file_group>
<file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
<file_group id="oce_1y" output_freq="1y" output_level="10" enabled=".TRUE."> <!-- real yearly files -->
</file_group>
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="oce_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="oce_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="oce_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="oce_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="oce_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="oce_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="oce_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="oce_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="oce_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="oce_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="oce_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
......
cfgs/AGRIF_DEMO/EXPREF/namelist_cfg
View file @ dd59ced6
......@@ -10,10 +10,7 @@
!! namcfg parameters of the configuration (default: user defined GYRE)
!! namwad Wetting and drying (default: OFF)
!! namtsd data: temperature & salinity (default: OFF)
!! namcrs coarsened grid (for outputs and/or TOP) (ln_crs =T)
!! namc1d 1D configuration options (ln_c1d =T)
!! namc1d_dyndmp 1D newtonian damping applied on currents (ln_c1d =T)
!! namc1d_uvd 1D data (currents) (ln_c1d =T)
!!======================================================================
!
!-----------------------------------------------------------------------
......@@ -27,9 +24,7 @@
!-----------------------------------------------------------------------
&namdom ! time and space domain
!-----------------------------------------------------------------------
ln_linssh = .false. ! =T linear free surface ==>> model level are fixed in time
!
rn_Dt = 5400. ! time step for the dynamics and tracer
rn_Dt = 10800. ! time step for the dynamics and tracer
ln_meshmask = .false. ! =T create a mesh file
/
!-----------------------------------------------------------------------
......@@ -93,7 +88,7 @@
ln_traqsr = .true. ! Light penetration in the ocean (T => fill namtra_qsr)
ln_ssr = .true. ! Sea Surface Restoring on T and/or S (T => fill namsbc_ssr)
ln_rnf = .true. ! runoffs (T => fill namsbc_rnf)
nn_fwb = 0 ! FreshWater Budget: =0 unchecked
nn_fwb = 1 ! FreshWater Budget: =0 unchecked
/
!-----------------------------------------------------------------------
&namsbc_blk ! namsbc_blk generic Bulk formula (ln_blk =T)
......@@ -121,6 +116,10 @@
ln_qsr_rgb = .true. ! RGB light penetration (Red-Green-Blue)
!
nn_chldta = 1 ! RGB : Chl data (=1) or cst value (=0)
nn_chlprfl = 1 ! Chl vertical profile (nn_chldta = 1)
! 0 = vertical extrapolation of surface data
! 1 = vertical analytical profile deduced from surface data
! 2 = 3D Chl data
cn_dir = './' ! root directory for the chlorophyl data location
!___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
......@@ -273,8 +272,6 @@
! ! time invariant coefficients: aei0 = 1/2 Ue*Le
rn_Ue = 0.03 ! lateral diffusive velocity [m/s] (nn_aht_ijk_t= 0, 10, 20, 30)
rn_Le = 200.e+3 ! lateral diffusive length [m] (nn_aht_ijk_t= 0, 10)
!
ln_ldfeiv_dia =.true. ! diagnose eiv stream function and velocities
/
!-----------------------------------------------------------------------
&namtra_dmp ! tracer: T & S newtonian damping (default: OFF)
......@@ -314,6 +311,8 @@
&namdyn_spg ! surface pressure gradient (default: NO selection)
!-----------------------------------------------------------------------
ln_dynspg_ts = .true. ! split-explicit free surface
nn_bt_flt = 3 ! Time filtering with dissipative Forward Backward
rn_bt_alpha = 0.09 ! Dissipative Forward Backward parameter
/
!-----------------------------------------------------------------------
&namdyn_ldf ! lateral diffusion on momentum (default: NO selection)
......@@ -366,13 +365,10 @@
!! *** Diagnostics namelists *** !!
!! !!
!! namtrd dynamics and/or tracer trends (default: OFF)
!! namhsb Heat and salt budgets (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namflo float parameters (default: OFF)
!! nam_diadct transports through some sections (default: OFF)
!! nam_dia25h 25h Mean Output (default: OFF)
!! namnc4 netcdf4 chunking and compression settings ("key_netcdf4")
!! namnc4 netcdf4 chunking and compression settings
!!======================================================================
!
!!======================================================================
......
cfgs/AGRIF_DEMO/EXPREF/namelist_top_cfg
View file @ dd59ced6
......@@ -36,6 +36,10 @@
ln_trcldf_tra = .true. ! use active tracer setting
/
!-----------------------------------------------------------------------
&namtrc_snk ! Sedimentation of particles
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namtrc_rad ! treatment of negative concentrations
!-----------------------------------------------------------------------
/
......
cfgs/AGRIF_DEMO/cpp_AGRIF_DEMO.fcm
View file @ dd59ced6
bld::tool::fppkeys key_si3 key_top key_xios key_agrif key_qco
bld::tool::fppkeys key_si3 key_top key_xios key_agrif key_qco key_vco_3d
cfgs/AMM12/EXPREF/context_nemo.xml
View file @ dd59ced6
......@@ -4,7 +4,7 @@
==============================================================================================
-->
<context id="nemo">
<!-- $id$ -->
<variable_definition>
<!-- Year/Month/Day of time origin for NetCDF files; defaults to 1800-01-01 -->
<variable id="ref_year" type="int"> 1900 </variable>
......@@ -65,6 +65,36 @@
<field id="diamlr_r036" enabled=".FALSE." />
<field id="diamlr_r037" enabled=".FALSE." />
<field id="diamlr_r038" enabled=".FALSE." />
<field id="diamlr_r039" enabled=".FALSE." />
<field id="diamlr_r040" enabled=".FALSE." />
<field id="diamlr_r041" enabled=".FALSE." />
<field id="diamlr_r042" enabled=".FALSE." />
<field id="diamlr_r043" enabled=".FALSE." />
<field id="diamlr_r044" enabled=".FALSE." />
<field id="diamlr_r045" enabled=".FALSE." />
<field id="diamlr_r046" enabled=".FALSE." />
<field id="diamlr_r047" enabled=".FALSE." />
<field id="diamlr_r048" enabled=".FALSE." />
<field id="diamlr_r049" enabled=".FALSE." />
<field id="diamlr_r050" enabled=".FALSE." />
<field id="diamlr_r051" enabled=".FALSE." />
<field id="diamlr_r052" enabled=".FALSE." />
<field id="diamlr_r053" enabled=".FALSE." />
<field id="diamlr_r054" enabled=".FALSE." />
<field id="diamlr_r055" enabled=".FALSE." />
<field id="diamlr_r056" enabled=".FALSE." />
<field id="diamlr_r057" enabled=".FALSE." />
<field id="diamlr_r058" enabled=".FALSE." />
<field id="diamlr_r059" enabled=".FALSE." />
<field id="diamlr_r060" enabled=".FALSE." />
<field id="diamlr_r061" enabled=".FALSE." />
<field id="diamlr_r062" enabled=".FALSE." />
<field id="diamlr_r063" enabled=".FALSE." />
<field id="diamlr_r064" enabled=".FALSE." />
<field id="diamlr_r065" enabled=".FALSE." />
<field id="diamlr_r066" enabled=".FALSE." />
<field id="diamlr_r067" enabled=".FALSE." />
<field id="diamlr_r068" enabled=".FALSE." />
<field id="diamlr_r101" field_ref="diamlr_time" expr="diamlr_time^0.0" enabled=".TRUE." comment="mean" />
<!-- Fields selected for regression analysis -->
<field id="diamlr_f001" field_ref="ssh" enabled=".TRUE." />
......@@ -77,26 +107,6 @@
<!-- Files definition -->
<file_definition src="./file_def_nemo-oce.xml"/> <!-- NEMO ocean dynamics -->
<file_definition type="multiple_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4">
<!-- Activation of intermediate output for multiple-linear-regression analysis (diamlr) -->
<file_group id="diamlr_files" output_freq="1d" output_level="10" enabled=".TRUE."/>
<!-- Activation and selection of daily detided model diagnostics (diadetide) -->
<file_group id="diadetide_files" output_freq="1d" output_level="10" enabled=".TRUE.">
<file id="file22" name_suffix="_M2detided_grid_T" description="M2-detided ocean T-grid variables">
<field id="diadetide_ssh" field_ref="diadetide_weight_grid_T_2D" operation="accumulate"> this * ssh </field>
</file>
<file id="file23" name_suffix="_M2detided_grid_U" description="M2-detided ocean U-grid variables">
<field id="diadetide_uoce" field_ref="diadetide_weight_grid_U_3D" operation="accumulate"> this * uoce </field>
</file>
<file id="file24" name_suffix="_M2detided_grid_V" description="M2-detided ocean V-grid variables">
<field id="diadetide_voce" field_ref="diadetide_weight_grid_V_3D" operation="accumulate"> this * voce </field>
</file>
</field_group>
</file_definition>
<!-- Axis definition -->
<axis_definition src="./axis_def_nemo.xml"/>
......
cfgs/AMM12/EXPREF/file_def_nemo-oce.xml
View file @ dd59ced6
......@@ -10,85 +10,97 @@
<file_definition type="multiple_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4">
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="oce_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<!--old <file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> old --> <!-- 1h files -->
<!-- TB files -->
<file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE." >
<file_group id="oce_1h" output_freq="1h" output_level="10" enabled=".TRUE." >
<file id="file9" name_suffix="_shelftb_grid_T" description="TB ocean T grid variables" enabled=".TRUE." >
<file id="file1" name_suffix="_shelftb_grid_T" description="TB ocean T grid variables" enabled=".TRUE." >
<field field_ref="sst" operation="instant" enabled=".TRUE." />
<field field_ref="sbt" operation="instant" enabled=".TRUE." />
<field field_ref="sss" operation="instant" enabled=".TRUE." />
<field field_ref="sbs" operation="instant" enabled=".TRUE." />
</file>
<file id="file10" name_suffix="_shelftb_grid_U" description="TB ocean U grid variables" enabled=".TRUE." >
<file id="file2" name_suffix="_shelftb_grid_U" description="TB ocean U grid variables" enabled=".TRUE." >
<field field_ref="ssu" operation="instant" enabled=".TRUE." />
<field field_ref="sbu" operation="instant" enabled=".TRUE." />
</file>
<file id="file11" name_suffix="_shelftb_grid_V" description="TB ocean V grid variables" enabled=".TRUE." >
<file id="file3" name_suffix="_shelftb_grid_V" description="TB ocean V grid variables" enabled=".TRUE." >
<field field_ref="ssv" operation="instant" enabled=".TRUE." />
<field field_ref="sbv" operation="instant" enabled=".TRUE." />
</file>
</file_group>
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="25h_mean" output_freq="1d" output_level="10" enabled=".TRUE.">
<file id="file12" name_suffix="_25hourm_grid_T" description="ocean T grid variables, 25h meaned" enabled=".TRUE." >
<field field_ref="temper25h" name="votemper" operation="instant" enabled=".TRUE."/>
<field field_ref="tempis25h" name="votempis" operation="instant" enabled=".TRUE."/>
<field field_ref="salin25h" name="vosaline" operation="instant" enabled=".TRUE."/>
<field field_ref="ssh25h" name="sossheig" operation="instant" enabled=".TRUE."/>
</file>
<file id="file13" name_suffix="_25hourm_grid_U" description="ocean U grid variables, 25h meaned" enabled=".TRUE." >
<field field_ref="vozocrtx25h" name="vozocrtx" operation="instant" enabled=".TRUE."/>
</file>
<file id="file14" name_suffix="_25hourm_grid_V" description="ocean V grid variables, 25h meaned" enabled=".TRUE." >
<field field_ref="vomecrty25h" name="vomecrty" operation="instant" enabled=".TRUE."/>
</file>
<file id="file15" name_suffix="_25hourm_grid_W" description="ocean W grid variables, 25h meaned" enabled=".TRUE." >
<field field_ref="vovecrtz25h" name="vovecrtz" operation="instant" enabled=".TRUE."/>
<field field_ref="avt25h" name="votkeavt" operation="instant" enabled=".TRUE."/>
<field field_ref="avm25h" name="votkeavm" operation="instant" enabled=".TRUE."/>
<field field_ref="tke25h" name="votke" operation="instant" enabled=".TRUE."/>
<field field_ref="mxln25h" name="mxln" operation="instant" enabled=".TRUE."/>
</file>
<file_group id="oce_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="oce_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="oce_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="oce_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="oce_25h_mean" output_freq="1d" output_level="10" enabled=".TRUE.">
<file id="file11" name_suffix="_25hourm_grid_T" description="ocean T grid variables, 25h meaned" enabled=".TRUE." >
<field field_ref="temper25h" name="votemper" operation="instant" enabled=".TRUE."/>
<field field_ref="tempis25h" name="votempis" operation="instant" enabled=".TRUE."/>
<field field_ref="salin25h" name="vosaline" operation="instant" enabled=".TRUE."/>
<field field_ref="ssh25h" name="sossheig" operation="instant" enabled=".TRUE."/>
</file>
<file id="file12" name_suffix="_25hourm_grid_U" description="ocean U grid variables, 25h meaned" enabled=".TRUE." >
<field field_ref="vozocrtx25h" name="vozocrtx" operation="instant" enabled=".TRUE."/>
</file>
<file id="file13" name_suffix="_25hourm_grid_V" description="ocean V grid variables, 25h meaned" enabled=".TRUE." >
<field field_ref="vomecrty25h" name="vomecrty" operation="instant" enabled=".TRUE."/>
</file>
<file id="file14" name_suffix="_25hourm_grid_W" description="ocean W grid variables, 25h meaned" enabled=".TRUE." >
<field field_ref="vovecrtz25h" name="vovecrtz" operation="instant" enabled=".TRUE."/>
<field field_ref="avt25h" name="votkeavt" operation="instant" enabled=".TRUE."/>
<field field_ref="avm25h" name="votkeavm" operation="instant" enabled=".TRUE."/>
<field field_ref="tke25h" name="votke" operation="instant" enabled=".TRUE."/>
<field field_ref="mxln25h" name="mxln" operation="instant" enabled=".TRUE."/>
</file>
</file_group>
<file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files -->
<file_group id="oce_1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files -->
<file id="file1" name_suffix="_grid_T" description="ocean T grid variables" >
<file id="file21" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="sst" name="tos" />
<field field_ref="sss" name="sos" />
<field field_ref="ssh" name="zos" />
</file>
<file id="file2" name_suffix="_grid_U" description="ocean U grid variables" >
<file id="file22" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="ssu" name="uos" />
</file>
<file id="file3" name_suffix="_grid_V" description="ocean V grid variables" >
<file id="file23" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="ssv" name="vos" />
</file>
<file id="file24" name_suffix="_M2detided_grid_T" description="M2-detided ocean T-grid variables">
<field id="diadetide_ssh" field_ref="diadetide_weight_grid_T_2D" operation="accumulate"> this * ssh </field>
</file>
<file id="file25" name_suffix="_M2detided_grid_U" description="M2-detided ocean U-grid variables">
<field id="diadetide_uoce" field_ref="diadetide_weight_grid_U_3D" operation="accumulate"> this * uoce </field>
</file>
<file id="file26" name_suffix="_M2detided_grid_V" description="M2-detided ocean V-grid variables">
<field id="diadetide_voce" field_ref="diadetide_weight_grid_V_3D" operation="accumulate"> this * voce </field>
</file>
</file_group>
<file_group id="3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="oce_3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file_group id="oce_5d" output_freq="5d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
<file id="file4" name_suffix="_grid_T" description="ocean T grid variables" >
<file id="file31" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="toce" name="thetao" />
<field field_ref="soce" name="so" />
<field field_ref="sst" name="tos" />
......@@ -100,39 +112,39 @@
<field field_ref="qsr" name="rsntds" />
<field field_ref="qt" name="tohfls" />
<field field_ref="taum" />
<field field_ref="utau" name="tauuo" />
<field field_ref="vtau" name="tauvo" />
<field field_ref="mldkz5" />
<field field_ref="mldr10_1" />
</file>
<file id="file5" name_suffix="_grid_U" description="ocean U grid variables" >
<file id="file32" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="uoce" name="uo" />
<field field_ref="ssu" name="uos" />
<field field_ref="utau" name="tauuo" />
</file>
<file id="file6" name_suffix="_grid_V" description="ocean V grid variables" >
<file id="file33" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="voce" name="vo" />
<field field_ref="ssv" name="vos" />
<field field_ref="vtau" name="tauvo" />
</file>
<file id="file7" name_suffix="_grid_W" description="ocean W grid variables" >
<file id="file34" name_suffix="_grid_W" description="ocean W grid variables" >
<field field_ref="woce" name="wo" />
<field field_ref="avt" name="difvho" />
</file>
</file_group>
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
<file_group id="2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="oce_1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
<file_group id="oce_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="oce_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="oce_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="oce_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="1y" output_freq="1y" output_level="10" enabled=".TRUE."/> <!-- real yearly files -->
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="oce_1y" output_freq="1y" output_level="10" enabled=".TRUE."/> <!-- real yearly files -->
<file_group id="oce_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="oce_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="oce_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
......
cfgs/AMM12/EXPREF/namelist_cfg
View file @ dd59ced6
......@@ -10,10 +10,7 @@
!! namcfg parameters of the configuration (default: user defined GYRE)
!! namwad Wetting and drying (default: OFF)
!! namtsd data: temperature & salinity (default: OFF)
!! namcrs coarsened grid (for outputs and/or TOP) (ln_crs =T)
!! namc1d 1D configuration options (ln_c1d =T)
!! namc1d_dyndmp 1D newtonian damping applied on currents (ln_c1d =T)
!! namc1d_uvd 1D data (currents) (ln_c1d =T)
!!======================================================================
!
!-----------------------------------------------------------------------
......@@ -25,7 +22,7 @@
nn_date0 = 20120102 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1)
nn_leapy = 1 ! Leap year calendar (1) or not (0)
ln_rstart = .true. ! start from rest (F) or from a restart file (T)
cn_ocerst_in = "amm12_restart_oce" ! suffix of ocean restart name (input)
cn_ocerst_in = "amm12_restart_oce_rk3" ! suffix of ocean restart name (input)
cn_ocerst_out = "restart" ! suffix of ocean restart name (input)
nn_stock = 1296 ! frequency of creation of a restart file (modulo referenced to 1)
nn_write = 144 ! frequency of write in the output file (modulo referenced to nit000)
......@@ -33,7 +30,7 @@
!-----------------------------------------------------------------------
&namdom ! time and space domain
!-----------------------------------------------------------------------
rn_Dt = 600. ! time step for the dynamics (and tracer if nn_acc=0)
rn_Dt = 1200. ! time step for the dynamics (and tracer if nn_acc=0)
/
!-----------------------------------------------------------------------
&namcfg ! parameters of the configuration (default: user defined GYRE)
......@@ -307,7 +304,9 @@
!-----------------------------------------------------------------------
ln_dynspg_ts = .true. ! split-explicit free surface
ln_bt_auto = .false. ! Number of sub-step defined from:
nn_e = 30 ! =F : the number of sub-step in rn_Dt seconds
nn_bt_flt = 3 ! Time filtering with dissipative Forward Backward
rn_bt_alpha = 0.07 ! Dissipative Forward Backward parameter
nn_e = 60 ! =F : the number of sub-step in rn_Dt seconds
/
!-----------------------------------------------------------------------
&namdyn_ldf ! lateral diffusion on momentum (default: NO selection)
......@@ -349,20 +348,12 @@
!! *** Diagnostics namelists *** !!
!! !!
!! namtrd dynamics and/or tracer trends (default: OFF)
!! namhsb Heat and salt budgets (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namflo float parameters (default: OFF)
!! nam_diadct transports through some sections (default: OFF)
!! nam_dia25h 25h Mean Output (default: OFF)
!! namnc4 netcdf4 chunking and compression settings ("key_netcdf4")
!! namnc4 netcdf4 chunking and compression settings
!!======================================================================
!
!-----------------------------------------------------------------------
&nam_dia25h ! 25h Mean Output (default F)
!-----------------------------------------------------------------------
ln_dia25h = .true. ! Choose 25h mean output or not
/
!!======================================================================
!! *** Observation & Assimilation *** !!
!! !!
......
cfgs/AMM12/cpp_AMM12.fcm
View file @ dd59ced6
bld::tool::fppkeys key_diainstant key_xios key_qco
bld::tool::fppkeys key_diainstant key_xios key_qco key_vco_3d
cfgs/C1D/EXPREF 0 → 120000
View file @ dd59ced6
EXP_PAPA
\ No newline at end of file
tests/C1D_ASICS/EXP00/context_nemo.xml → cfgs/C1D/EXP_ASICS/context_nemo.xml
View file @ dd59ced6
......@@ -4,7 +4,6 @@
==============================================================================================
-->
<context id="nemo">
<!-- $id$ -->
<!-- Fields definition -->
<field_definition src="./field_def_nemo-oce.xml"/> <!-- NEMO ocean dynamics -->
......@@ -20,6 +19,5 @@
<!-- Grids definition -->
<grid_definition src="./grid_def_nemo.xml"/>
</context>
cfgs/C1D_PAPA/EXPREF/file_def_nemo-oce.xml → cfgs/C1D/EXP_ASICS/file_def_nemo-oce.xml
View file @ dd59ced6
......@@ -10,19 +10,19 @@
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4">
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="oce_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="oce_1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="oce_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="oce_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="oce_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="oce_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files -->
<file_group id="oce_1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files -->
<file id="file1" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="e3t" />
......@@ -58,12 +58,12 @@
</file_group>
<file_group id="3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."/> <!-- 5d files -->
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="oce_3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="oce_5d" output_freq="5d" output_level="10" enabled=".TRUE."/> <!-- 5d files -->
<file_group id="oce_1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
<file_group id="oce_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="oce_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="oce_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>