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  • nemo/nemo
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  • hatfield/nemo
  • extdevs/nemo
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tests/C1D_ASICS/EXP00/file_def_nemo-oce.xml → cfgs/C1D/EXP_PAPA/file_def_nemo-oce.xml
View file @ 232914dd
......@@ -8,45 +8,26 @@
============================================================================================================
-->
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="1h" min_digits="4">
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="10d" min_digits="4">
<file_group id="1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="oce_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="oce_1h" output_freq="1h" output_level="10" enabled=".TRUE."/> <!-- 1h files -->
<file_group id="2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="oce_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="oce_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="oce_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="6h" output_freq="6h" output_level="10" enabled=".FALSE."> <!-- 6h files -->
<file_group id="oce_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file id="file61" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="e3t" />
<field field_ref="toce" name="votemper" operation="instant" freq_op="6h" > @toce_e3t / @e3t </field>
<field field_ref="soce" name="vosaline" operation="instant" freq_op="6h" > @soce_e3t / @e3t </field>
<field field_ref="mldkz5" />
<field field_ref="mldr10_1" />
<field field_ref="empmr" name="wfo" />
<field field_ref="qsr_oce" name="qsr_oce" />
<field field_ref="qns_oce" name="qns_oce" />
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
</file>
</file_group>
<file_group id="12h" output_freq="12h" output_level="10" enabled=".FALSE."> <!-- 12h files -->
<file_group id="oce_1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files -->
<file id="file1" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="e3t" />
<field field_ref="toce" name="votemper" operation="instant" freq_op="12h" > @toce_e3t / @e3t </field>
<field field_ref="soce" name="vosaline" operation="instant" freq_op="12h" > @soce_e3t / @e3t </field>
<field field_ref="toce" name="votemper" operation="instant" freq_op="1d" > @toce_e3t / @e3t </field>
<field field_ref="soce" name="vosaline" operation="instant" freq_op="1d" > @soce_e3t / @e3t </field>
<field field_ref="mldkz5" />
<field field_ref="mldr10_1" />
<field field_ref="empmr" name="wfo" />
......@@ -60,12 +41,12 @@
</file>
<file id="file2" name_suffix="_grid_U" description="ocean U grid variables" >
<field field_ref="uoce" name="uo" operation="instant" freq_op="12h" > @uoce_e3u / @e3u </field>
<field field_ref="uoce" name="uo" operation="instant" freq_op="1d" > @uoce_e3u / @e3u </field>
<field field_ref="utau" name="tauuo" />
</file>
<file id="file3" name_suffix="_grid_V" description="ocean V grid variables" >
<field field_ref="voce" name="vo" operation="instant" freq_op="12h" > @voce_e3v / @e3v </field>
<field field_ref="voce" name="vo" operation="instant" freq_op="1d" > @voce_e3v / @e3v </field>
<field field_ref="vtau" name="tauvo" />
</file>
......@@ -77,32 +58,12 @@
</file_group>
<file_group id="1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 1d files -->
<file id="file60" name_suffix="_grid_T" description="ocean T grid variables" >
<field field_ref="e3t" />
<field field_ref="toce" name="votemper" operation="instant" freq_op="1d" > @toce_e3t / @e3t </field>
<field field_ref="soce" name="vosaline" operation="instant" freq_op="1d" > @soce_e3t / @e3t </field>
<field field_ref="mldkz5" />
<field field_ref="mldr10_1" />
<field field_ref="empmr" name="wfo" />
<field field_ref="qsr_oce" name="qsr_oce" />
<field field_ref="qns_oce" name="qns_oce" />
<field field_ref="qt_oce" name="qt_oce" />
<field field_ref="saltflx" name="sfx" />
<field field_ref="taum" name="taum" />
<field field_ref="wspd" name="windsp" />
<field field_ref="precip" name="precip" />
</file>
</file_group>
<file_group id="3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="5d" output_freq="5d" output_level="10" enabled=".TRUE."/> <!-- 5d files -->
<file_group id="1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
<file_group id="2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
<file_group id="oce_3d" output_freq="3d" output_level="10" enabled=".TRUE."/> <!-- 3d files -->
<file_group id="oce_5d" output_freq="5d" output_level="10" enabled=".TRUE."/> <!-- 5d files -->
<file_group id="oce_1m" output_freq="1mo" output_level="10" enabled=".TRUE."/> <!-- real monthly files -->
<file_group id="oce_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="oce_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="oce_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
cfgs/C1D_PAPA/EXPREF/namelist_cfg → cfgs/C1D/EXP_PAPA/namelist_cfg
View file @ 232914dd
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! NEMO/OCE : Reference namelist_ref !!
!! NEMO/OCE Configuration namelist : overwrite default values defined in SHARED/namelist_ref
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! NEMO/OCE : 1 - Domain & run manager (namrun, namcfg, namdom, namtsd, namcrs, namc1d, namc1d_uvd)
!! namelists 2 - Surface boundary (namsbc, namsbc_flx, namsbc_blk, namsbc_cpl,
!! namsbc_sas, namtra_qsr, namsbc_rnf,
!! namsbc_isf, namsbc_iscpl, namsbc_apr,
!! namsbc_ssr, namsbc_wave, namberg)
!! 3 - lateral boundary (namlbc, namagrif, nambdy, nambdy_tide)
!! 4 - top/bot boundary (namdrg, namdrg_top, namdrg_bot, nambbc, nambbl)
!! 5 - Tracer (nameos, namtra_adv, namtra_ldf, namtra_eiv, namtra_dmp)
!! 6 - dynamics (namdyn_adv, namdyn_vor, namdyn_hpg, namdyn_spg, namdyn_ldf)
!! 7 - Vertical physics (namzdf, namzdf_ric, namzdf_tke, namzdf_gls, namzdf_iwm)
!! 8 - diagnostics (namnc4, namtrd, namspr, namflo, namhsb)
!! 9 - Obs & Assim (namobs, nam_asminc)
!! 10 - miscellaneous (nammpp, namctl, namsto)
!!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
!! C1D - PAPA configuration !!
!!======================================================================
!! *** Domain & Run management namelists *** !!
!! !!
......@@ -24,10 +10,7 @@
!! namcfg parameters of the configuration (default: user defined GYRE)
!! namwad Wetting and drying (default: OFF)
!! namtsd data: temperature & salinity (default: OFF)
!! namcrs coarsened grid (for outputs and/or TOP) (ln_crs =T)
!! namc1d 1D configuration options (ln_c1d =T)
!! namc1d_dyndmp 1D newtonian damping applied on currents (ln_c1d =T)
!! namc1d_uvd 1D data (currents) (ln_c1d =T)
!!======================================================================
!
!-----------------------------------------------------------------------
......@@ -44,12 +27,11 @@
nn_date0 = 20100615 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1)
nn_stock = 87600 ! frequency of creation of a restart file (modulo referenced to 1)
nn_write = 240 ! frequency of write in the output file (modulo referenced to nn_it000)
ln_top = .false. ! Consider (T) or bypass (F) the TOP routines when the key_top is activated
/
!-----------------------------------------------------------------------
&namdom ! time and space domain
!-----------------------------------------------------------------------
ln_linssh = .true. ! =T linear free surface ==>> model level are fixed in time
!
rn_Dt = 360. ! time step for the dynamics and tracer
!
ln_c1d = .true. ! Single column domain (1x1pt) (T => fill namc1d)
......@@ -68,7 +50,7 @@
! ! =T read T-S fields for:
ln_tsd_init = .true. ! ocean initialisation
cn_dir = './' ! root directory for the T-S data location
cn_dir = './PAPA/' ! root directory for the T-S data location
!___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! ! pairing ! filename !
......@@ -80,28 +62,16 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namcrs ! coarsened grid (for outputs and/or TOP) (ln_crs =T)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namc1d ! 1D configuration options (ln_c1d =T default: PAPA station)
!-----------------------------------------------------------------------
rn_lat1d = 50. ! Column latitude
rn_lon1d = -145. ! Column longitude
/
!-----------------------------------------------------------------------
&namc1d_dyndmp ! U & V newtonian damping (ln_c1d =T default: OFF)
!-----------------------------------------------------------------------
ln_dyndmp = .false. ! add a damping term (T) or not (F)
/
!-----------------------------------------------------------------------
&namc1d_uvd ! data: U & V currents (ln_c1d =T default: OFF)
!-----------------------------------------------------------------------
! ! =T read U-V fields for:
ln_uvd_init = .false. ! ocean initialisation
ln_uvd_dyndmp = .false. ! U-V restoring
cn_dir = './' ! root directory for the U-V data location
!
cn_dir = './PAPA/' ! root directory for the U-V data location
!___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! ! pairing ! filename !
......@@ -152,7 +122,7 @@
rn_zqt = 2. ! Air temperature & humidity reference height (m)
rn_zu = 10. ! Wind vector reference height (m)
cn_dir = './' ! root directory for the bulk data location
cn_dir = './PAPA/' ! root directory for the bulk data location
!___________!_________________________!___________________!___________!_____________!________!___________!______________________________________!__________!_______________!
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! ! pairing ! filename !
......@@ -165,7 +135,6 @@
sn_prec = 'forcing_C1D_PAPA' , 3. , 'sowaprec', .false. , .false. , 'yearly' , '' , '' , ''
sn_snow = 'forcing_C1D_PAPA' , 3. , 'sososnow', .false. , .false. , 'yearly' , '' , '' , ''
sn_slp = 'forcing_C1D_PAPA' , 3. , 'somslpre', .true. , .false. , 'yearly' , '' , '' , ''
/
!-----------------------------------------------------------------------
&namsbc_cpl ! coupled ocean/atmosphere model ("key_oasis3")
......@@ -183,13 +152,20 @@
&namtra_qsr ! penetrative solar radiation (ln_traqsr =T)
!-----------------------------------------------------------------------
! ! type of penetration (default: NO selection)
ln_qsr_rgb = .true. ! RGB light penetration (Red-Green-Blue)
ln_qsr_5bd = .true. ! 5BD light penetration (IR-Red-Green-Blue-UV)
! ! RGB, 2BD & 5BD choices:
rn_abs = 0.45 ! RGB, 2BD & 5BD : fraction absorbed in the very near surface
nn_chldta = 1 ! RGB & 5BD: cst value (=0) or Chl data (=1)
nn_chlprfl = 0 ! Chl vertical profile (nn_chldta = 1)
! 0 = vertical extrapolation of surface data
! 1 = vertical analytical profile deduced from surface data
! 2 = 3D Chl data
rn_par = 0.47 ! 5BD : fraction of photosynthetically active radiation
cn_dir = './' ! root directory for the chlorophyl data location
cn_dir = './PAPA/' ! root directory for the chlorophyl data location
!___________!_________________________!___________________!___________!_____________!________!___________!__________________!__________!_______________!
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ ! weights filename ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! ! pairing ! filename !
sn_chl ='chlorophyll_PAPASTATION', -1. , 'CHLA' , .true. , .true. , 'yearly' , '' , '' , ''
/
!-----------------------------------------------------------------------
......@@ -418,13 +394,10 @@
!! *** Diagnostics namelists *** !!
!! !!
!! namtrd dynamics and/or tracer trends (default: OFF)
!! namhsb Heat and salt budgets (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namdiu Cool skin and warm layer models (default: OFF)
!! namflo float parameters (default: OFF)
!! nam_diadct transports through some sections (default: OFF)
!! nam_dia25h 25h Mean Output (default: OFF)
!! namnc4 netcdf4 chunking and compression settings ("key_netcdf4")
!! namnc4 netcdf4 chunking and compression settings
!!======================================================================
!
!-----------------------------------------------------------------------
......@@ -432,27 +405,15 @@
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namhsb ! Heat and salt budgets (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namdiu ! Cool skin and warm layer models (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namflo ! float parameters (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nam_diadct ! transports through some sections (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&nam_dia25h ! 25h Mean Output (default: OFF)
!-----------------------------------------------------------------------
/
!-----------------------------------------------------------------------
&namnc4 ! netcdf4 chunking and compression settings ("key_netcdf4")
&namnc4 ! netcdf4 chunking and compression settings
!-----------------------------------------------------------------------
/
......
cfgs/C1D/EXP_PISCES_BATS/axis_def_nemo.xml 0 → 120000
View file @ 232914dd
../../SHARED/axis_def_nemo.xml
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/context_nemo.xml 0 → 100644
View file @ 232914dd
<!--
==============================================================================================
NEMO context
==============================================================================================
-->
<context id="nemo">
<variable_definition>
<!-- Year/Month/Day of time origin for NetCDF files; defaults to 1800-01-01 -->
<variable id="ref_year" type="int"> 1900 </variable>
<variable id="ref_month" type="int"> 01 </variable>
<variable id="ref_day" type="int"> 01 </variable>
<variable id="rau0" type="float" > 1026.0 </variable>
<variable id="cpocean" type="float" > 3991.86795711963 </variable>
<variable id="convSpsu" type="float" > 0.99530670233846 </variable>
<variable id="rhoic" type="float" > 917.0 </variable>
<variable id="rhosn" type="float" > 330.0 </variable>
<variable id="missval" type="float" > 1.e20 </variable>
</variable_definition>
<!-- Fields definition -->
<field_definition src="./field_def_nemo-oce.xml"/> <!-- NEMO ocean dynamics -->
<field_definition src="./field_def_nemo-ice.xml"/> <!-- NEMO sea-ice model -->
<field_definition src="./field_def_nemo-pisces.xml"/> <!-- NEMO ocean biology -->
<!-- Files definition -->
<file_definition src="./file_def_nemo.xml"/> <!-- NEMO ocean biology -->
<!-- Axis definition -->
<axis_definition src="./axis_def_nemo.xml"/>
<!-- Domain definition -->
<domain_definition src="./domain_def_nemo.xml"/>
<!-- Grids definition -->
<grid_definition src="./grid_def_nemo.xml"/>
</context>
cfgs/C1D/EXP_PISCES_BATS/domain_def_nemo.xml 0 → 120000
View file @ 232914dd
../../SHARED/domain_def_nemo.xml
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/field_def_nemo-innerttrc.xml 0 → 120000
View file @ 232914dd
../../SHARED/field_def_nemo-innerttrc.xml
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/field_def_nemo-oce.xml 0 → 120000
View file @ 232914dd
../../SHARED/field_def_nemo-oce.xml
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/field_def_nemo-pisces.xml 0 → 120000
View file @ 232914dd
../../SHARED/field_def_nemo-pisces.xml
\ No newline at end of file
cfgs/C1D/EXP_PISCES_BATS/file_def_nemo.xml 0 → 100644
View file @ 232914dd
<?xml version="1.0"?>
<!--
============================================================================================================
= output files definition =
= Define your own filesfor ocean dynamics context =
= put the variables you want... =
============================================================================================================
-->
<file_definition type="one_file" name="@expname@_@freq@_@startdate@_@enddate@" sync_freq="1mo" min_digits="4">
<file_group id="oce_1d" output_freq="1d" output_level="10" enabled=".TRUE."> <!-- 5d files -->
</file_group>
<file_group id="oce_1m" output_freq="1mo" output_level="10" enabled=".TRUE."> <!-- real monthly files -->
<file id="file1" name_suffix="_nemo" description="pisces sms variables" >
<field field_ref="toce" />
<field field_ref="soce" />
<field field_ref="sst" />
<field field_ref="sss" />
<field field_ref="empmr" />
<field field_ref="wspd" />
<field field_ref="mldr10_1" name="mld" />
<field field_ref="qsr" name="qsr" />
<field field_ref="DIC" />
<field field_ref="Alkalini" />
<field field_ref="O2" />
<field field_ref="CaCO3" />
<field field_ref="PO4" />
<field field_ref="POC" />
<field field_ref="Si" />
<field field_ref="PHY" />
<field field_ref="ZOO" />
<field field_ref="DOC" />
<field field_ref="PHY2" />
<field field_ref="ZOO2" />
<field field_ref="DSi" />
<field field_ref="Fer" />
<field field_ref="BFe" />
<field field_ref="GOC" />
<field field_ref="SFe" />
<field field_ref="DFe" />
<field field_ref="GSi" />
<field field_ref="NFe" />
<field field_ref="NCHL" />
<field field_ref="DCHL" />
<field field_ref="NO3" />
<field field_ref="NH4" />
<field field_ref="INTPP" name="INTPP" />
<field field_ref="PAR" />
<field field_ref="PPPHYN" />
<field field_ref="PPPHYD" />
<field field_ref="PPNEWN" />
<field field_ref="PPNEWD" />
<field field_ref="PBSi" />
<field field_ref="PFeN" />
<field field_ref="PFeD" />
<field field_ref="GRAZ1" />
<field field_ref="GRAZ2" />
<field field_ref="EPC100" />
<field field_ref="EPFE100" />
<field field_ref="EPSI100" />
<field field_ref="EPCAL100" />
<field field_ref="Cflx" />
<field field_ref="Heup" />
</file>
</file_group>
<file_group id="oce_1y" output_freq="1y" output_level="10" enabled=".FALSE."> <!-- real yearly files -->
</file_group>
<file_group id="oce_1ts" output_freq="1ts" output_level="10" enabled=".TRUE."/> <!-- 1 time step files -->
<file_group id="oce_2h" output_freq="2h" output_level="10" enabled=".TRUE."/> <!-- 2h files -->
<file_group id="oce_3h" output_freq="3h" output_level="10" enabled=".TRUE."/> <!-- 3h files -->
<file_group id="oce_4h" output_freq="4h" output_level="10" enabled=".TRUE."/> <!-- 4h files -->
<file_group id="oce_6h" output_freq="6h" output_level="10" enabled=".TRUE."/> <!-- 6h files -->
<file_group id="oce_2m" output_freq="2mo" output_level="10" enabled=".TRUE."/> <!-- real 2m files -->
<file_group id="oce_3m" output_freq="3mo" output_level="10" enabled=".TRUE."/> <!-- real 3m files -->
<file_group id="oce_4m" output_freq="4mo" output_level="10" enabled=".TRUE."/> <!-- real 4m files -->
<file_group id="oce_6m" output_freq="6mo" output_level="10" enabled=".TRUE."/> <!-- real 6m files -->
<file_group id="oce_2y" output_freq="2y" output_level="10" enabled=".TRUE."/> <!-- real 2y files -->
<file_group id="oce_5y" output_freq="5y" output_level="10" enabled=".TRUE."/> <!-- real 5y files -->
<file_group id="oce_10y" output_freq="10y" output_level="10" enabled=".TRUE."/> <!-- real 10y files -->
</file_definition>
cfgs/C1D/EXP_PISCES_BATS/grid_def_nemo.xml 0 → 120000
View file @ 232914dd
../../SHARED/grid_def_nemo.xml
\ No newline at end of file