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MODULE iom
!!======================================================================
!! *** MODULE iom ***
!! Input/Output manager : Library to read input files
!!======================================================================
!! History : 2.0 ! 2005-12 (J. Belier) Original code
!! 2.0 ! 2006-02 (S. Masson) Adaptation to NEMO
!! 3.0 ! 2007-07 (D. Storkey) Changes to iom_gettime
!! 3.4 ! 2012-12 (R. Bourdalle-Badie and G. Reffray) add C1D case
!! 3.6 ! 2014-15 DIMG format removed
!! 3.6 ! 2015-15 (J. Harle) Added procedure to read REAL attributes
!! 4.0 ! 2017-11 (M. Andrejczuk) Extend IOM interface to write any 3D fields
!!----------------------------------------------------------------------
!!----------------------------------------------------------------------
!! iom_open : open a file read only
!! iom_close : close a file or all files opened by iom
!! iom_get : read a field (interfaced to several routines)
!! iom_varid : get the id of a variable in a file
!! iom_rstput : write a field in a restart file (interfaced to several routines)
!!----------------------------------------------------------------------
USE dom_oce ! ocean space and time domain
USE domutl !
USE flo_oce ! floats module declarations
USE lbclnk ! lateal boundary condition / mpp exchanges
USE iom_def ! iom variables definitions
USE iom_nf90 ! NetCDF format with native NetCDF library
USE in_out_manager ! I/O manager
USE lib_mpp ! MPP library
USE sbc_oce , ONLY : nn_fsbc, ght_abl, ghw_abl, e3t_abl, e3w_abl, jpka, jpkam1
USE icb_oce , ONLY : nclasses, class_num ! !: iceberg classes
#if defined key_si3
USE ice , ONLY : jpl
#endif
USE phycst ! physical constants
USE dianam ! build name of file
#if defined key_xios
USE xios
# endif
USE ioipsl, ONLY : ju2ymds ! for calendar
USE crs ! Grid coarsening
#if defined key_top
USE trc, ONLY : profsed
#endif
USE lib_fortran
USE diu_bulk, ONLY : ln_diurnal_only, ln_diurnal
USE iom_nf90
USE netcdf
IMPLICIT NONE
PUBLIC ! must be public to be able to access iom_def through iom
#if defined key_xios
LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .TRUE. !: iom_put flag
#else
LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .FALSE. !: iom_put flag
#endif
PUBLIC iom_init, iom_init_closedef, iom_swap, iom_open, iom_close, iom_setkt, iom_varid, iom_get, iom_get_var
PUBLIC iom_chkatt, iom_getatt, iom_putatt, iom_getszuld, iom_rstput, iom_delay_rst, iom_put
PUBLIC iom_use, iom_context_finalize, iom_update_file_name, iom_miss_val
PUBLIC iom_xios_setid
PRIVATE iom_rp0d_sp, iom_rp1d_sp, iom_rp2d_sp, iom_rp3d_sp
PRIVATE iom_rp0d_dp, iom_rp1d_dp, iom_rp2d_dp, iom_rp3d_dp
PRIVATE iom_get_123d
PRIVATE iom_g0d_sp, iom_g1d_sp, iom_g2d_sp, iom_g3d_sp
PRIVATE iom_g0d_dp, iom_g1d_dp, iom_g2d_dp, iom_g3d_dp
PRIVATE iom_p1d_sp, iom_p2d_sp, iom_p3d_sp, iom_p4d_sp
PRIVATE iom_p1d_dp, iom_p2d_dp, iom_p3d_dp, iom_p4d_dp
#if defined key_xios
PRIVATE iom_set_domain_attr, iom_set_axis_attr, iom_set_field_attr, iom_set_file_attr, iom_get_file_attr, iom_set_grid_attr
PRIVATE set_grid, set_grid_bounds, set_scalar, set_xmlatt, set_mooring, iom_sdate
PRIVATE iom_set_rst_context, iom_set_vars_active
# endif
PRIVATE set_xios_context
PRIVATE iom_set_rstw_active
INTERFACE iom_get
MODULE PROCEDURE iom_g0d_sp, iom_g1d_sp, iom_g2d_sp, iom_g3d_sp
MODULE PROCEDURE iom_g0d_dp, iom_g1d_dp, iom_g2d_dp, iom_g3d_dp
END INTERFACE
INTERFACE iom_getatt
MODULE PROCEDURE iom_g0d_iatt, iom_g1d_iatt, iom_g0d_ratt, iom_g1d_ratt, iom_g0d_catt
END INTERFACE
INTERFACE iom_putatt
MODULE PROCEDURE iom_p0d_iatt, iom_p1d_iatt, iom_p0d_ratt, iom_p1d_ratt, iom_p0d_catt
END INTERFACE
INTERFACE iom_rstput
MODULE PROCEDURE iom_rp0d_sp, iom_rp1d_sp, iom_rp2d_sp, iom_rp3d_sp
MODULE PROCEDURE iom_rp0d_dp, iom_rp1d_dp, iom_rp2d_dp, iom_rp3d_dp
END INTERFACE
INTERFACE iom_put
MODULE PROCEDURE iom_p0d_sp, iom_p1d_sp, iom_p2d_sp, iom_p3d_sp, iom_p4d_sp
MODULE PROCEDURE iom_p0d_dp, iom_p1d_dp, iom_p2d_dp, iom_p3d_dp, iom_p4d_dp
END INTERFACE iom_put
!! * Substitutions
# include "do_loop_substitute.h90"
!!----------------------------------------------------------------------
!! NEMO/OCE 4.0 , NEMO Consortium (2018)
!! $Id: iom.F90 15033 2021-06-21 10:24:45Z smasson $
!! Software governed by the CeCILL license (see ./LICENSE)
!!----------------------------------------------------------------------
CONTAINS
SUBROUTINE iom_init( cdname, kdid, ld_closedef )
!!----------------------------------------------------------------------
!! *** ROUTINE ***
!!
!! ** Purpose :
!!
!!----------------------------------------------------------------------
CHARACTER(len=*), INTENT(in) :: cdname
INTEGER , OPTIONAL, INTENT(in) :: kdid
LOGICAL , OPTIONAL, INTENT(in) :: ld_closedef
#if defined key_xios
!
TYPE(xios_duration) :: dtime = xios_duration(0, 0, 0, 0, 0, 0)
TYPE(xios_date) :: start_date
Guillaume Samson
committed
CHARACTER(len=lc) :: clname, cltmpn
INTEGER :: irefyear, irefmonth, irefday
INTEGER :: ji
LOGICAL :: llrst_context ! is context related to restart
LOGICAL :: llrstr, llrstw
INTEGER :: inum
Guillaume Samson
committed
INTEGER :: iln
!
REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zt_bnds, zw_bnds
REAL(wp), DIMENSION(2,jpkam1) :: za_bnds ! ABL vertical boundaries
LOGICAL :: ll_closedef
LOGICAL :: ll_exist
!!----------------------------------------------------------------------
!
ll_closedef = .TRUE.
IF ( PRESENT(ld_closedef) ) ll_closedef = ld_closedef
!
ALLOCATE( zt_bnds(2,jpk), zw_bnds(2,jpk) )
!
Guillaume Samson
committed
clname = TRIM(cdname)
IF ( .NOT. Agrif_Root() ) THEN
iln = INDEX(clname,'/', BACK=.TRUE.)
cltmpn = clname(1:iln)
clname = clname(iln+1:LEN_TRIM(clname))
clname = TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
ENDIF
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CALL xios_context_initialize(TRIM(clname), mpi_comm_oce)
CALL iom_swap( cdname )
llrstr = (cdname == cr_ocerst_cxt) .OR. (cdname == cr_icerst_cxt)
llrstr = llrstr .OR. (cdname == cr_ablrst_cxt)
llrstr = llrstr .OR. (cdname == cr_toprst_cxt)
llrstr = llrstr .OR. (cdname == cr_sedrst_cxt)
llrstw = (cdname == cw_ocerst_cxt) .OR. (cdname == cw_icerst_cxt)
llrstw = llrstw .OR. (cdname == cw_ablrst_cxt)
llrstw = llrstw .OR. (cdname == cw_toprst_cxt)
llrstw = llrstw .OR. (cdname == cw_sedrst_cxt)
llrst_context = llrstr .OR. llrstw
! Calendar type is now defined in xml file
IF (.NOT.(xios_getvar('ref_year' ,irefyear ))) irefyear = 1900
IF (.NOT.(xios_getvar('ref_month',irefmonth))) irefmonth = 01
IF (.NOT.(xios_getvar('ref_day' ,irefday ))) irefday = 01
SELECT CASE ( nleapy ) ! Choose calendar for IOIPSL
CASE ( 1) ; CALL xios_define_calendar( TYPE = "Gregorian", time_origin = xios_date(irefyear,irefmonth,irefday,0,0,0), &
& start_date = xios_date( nyear, nmonth, nday,0,0,0) )
CASE ( 0) ; CALL xios_define_calendar( TYPE = "NoLeap" , time_origin = xios_date(irefyear,irefmonth,irefday,0,0,0), &
& start_date = xios_date( nyear, nmonth, nday,0,0,0) )
CASE (30) ; CALL xios_define_calendar( TYPE = "D360" , time_origin = xios_date(irefyear,irefmonth,irefday,0,0,0), &
& start_date = xios_date( nyear, nmonth, nday,0,0,0) )
END SELECT
! horizontal grid definition
IF(.NOT.llrst_context) CALL set_scalar
!
IF( cdname == cxios_context ) THEN
CALL set_grid( "T", glamt, gphit, .FALSE., .FALSE. )
CALL set_grid( "U", glamu, gphiu, .FALSE., .FALSE. )
CALL set_grid( "V", glamv, gphiv, .FALSE., .FALSE. )
CALL set_grid( "W", glamt, gphit, .FALSE., .FALSE. )
CALL set_grid( "F", glamf, gphif, .FALSE., .FALSE. )
CALL set_grid_znl( gphit )
!
IF( ln_cfmeta ) THEN ! Add additional grid metadata
CALL iom_set_domain_attr("grid_T", area = real( e1e2t(Nis0:Nie0, Njs0:Nje0), dp))
CALL iom_set_domain_attr("grid_U", area = real( e1e2u(Nis0:Nie0, Njs0:Nje0), dp))
CALL iom_set_domain_attr("grid_V", area = real( e1e2v(Nis0:Nie0, Njs0:Nje0), dp))
CALL iom_set_domain_attr("grid_W", area = REAL( e1e2t(Nis0:Nie0, Njs0:Nje0), dp))
CALL iom_set_domain_attr("grid_F", area = real( e1e2f(Nis0:Nie0, Njs0:Nje0), dp))
CALL set_grid_bounds( "T", glamf, gphif, glamt, gphit )
CALL set_grid_bounds( "U", glamv, gphiv, glamu, gphiu )
CALL set_grid_bounds( "V", glamu, gphiu, glamv, gphiv )
CALL set_grid_bounds( "W", glamf, gphif, glamt, gphit )
CALL set_grid_bounds( "F", glamt, gphit, glamf, gphif )
ENDIF
ENDIF
!
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IF( TRIM(cdname) == TRIM(cxios_context)//"_crs" ) THEN
CALL dom_grid_crs ! Save the parent grid information & Switch to coarse grid domain
!
CALL set_grid( "T", glamt_crs, gphit_crs, .FALSE., .FALSE. )
CALL set_grid( "U", glamu_crs, gphiu_crs, .FALSE., .FALSE. )
CALL set_grid( "V", glamv_crs, gphiv_crs, .FALSE., .FALSE. )
CALL set_grid( "W", glamt_crs, gphit_crs, .FALSE., .FALSE. )
CALL set_grid_znl( gphit_crs )
!
CALL dom_grid_glo ! Return to parent grid domain
!
IF( ln_cfmeta .AND. .NOT. llrst_context) THEN ! Add additional grid metadata
CALL iom_set_domain_attr("grid_T", area = real(e1e2t_crs(Nis0:Nie0, Njs0:Nje0), dp))
CALL iom_set_domain_attr("grid_U", area = real(e1u_crs(Nis0:Nie0, Njs0:Nje0) * e2u_crs(Nis0:Nie0, Njs0:Nje0), dp))
CALL iom_set_domain_attr("grid_V", area = real(e1v_crs(Nis0:Nie0, Njs0:Nje0) * e2v_crs(Nis0:Nie0, Njs0:Nje0), dp))
CALL iom_set_domain_attr("grid_W", area = real(e1e2t_crs(Nis0:Nie0, Njs0:Nje0), dp))
CALL set_grid_bounds( "T", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
CALL set_grid_bounds( "U", glamv_crs, gphiv_crs, glamu_crs, gphiu_crs )
CALL set_grid_bounds( "V", glamu_crs, gphiu_crs, glamv_crs, gphiv_crs )
CALL set_grid_bounds( "W", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
ENDIF
ENDIF
!
! vertical grid definition
IF(.NOT.llrst_context) THEN
CALL iom_set_axis_attr( "deptht", paxis = gdept_1d )
CALL iom_set_axis_attr( "depthu", paxis = gdept_1d )
CALL iom_set_axis_attr( "depthv", paxis = gdept_1d )
CALL iom_set_axis_attr( "depthw", paxis = gdepw_1d )
CALL iom_set_axis_attr( "depthf", paxis = gdept_1d )
! ABL
IF( .NOT. ALLOCATED(ght_abl) ) THEN ! force definition for xml files (xios)
ALLOCATE( ght_abl(jpka), ghw_abl(jpka), e3t_abl(jpka), e3w_abl(jpka) ) ! default allocation needed by iom
ght_abl(:) = -1._wp ; ghw_abl(:) = -1._wp
e3t_abl(:) = -1._wp ; e3w_abl(:) = -1._wp
ENDIF
CALL iom_set_axis_attr( "ght_abl", ght_abl(2:jpka) )
CALL iom_set_axis_attr( "ghw_abl", ghw_abl(2:jpka) )
! Add vertical grid bounds
zt_bnds(2,: ) = gdept_1d(:)
zt_bnds(1,2:jpk ) = gdept_1d(1:jpkm1)
zt_bnds(1,1 ) = gdept_1d(1) - e3w_1d(1)
zw_bnds(1,: ) = gdepw_1d(:)
zw_bnds(2,1:jpkm1) = gdepw_1d(2:jpk)
zw_bnds(2,jpk: ) = gdepw_1d(jpk) + e3t_1d(jpk)
CALL iom_set_axis_attr( "deptht", bounds=zw_bnds )
CALL iom_set_axis_attr( "depthu", bounds=zw_bnds )
CALL iom_set_axis_attr( "depthv", bounds=zw_bnds )
CALL iom_set_axis_attr( "depthw", bounds=zt_bnds )
CALL iom_set_axis_attr( "depthf", bounds=zw_bnds )
! ABL
za_bnds(1,:) = ghw_abl(1:jpkam1)
za_bnds(2,:) = ghw_abl(2:jpka )
CALL iom_set_axis_attr( "ght_abl", bounds=za_bnds )
za_bnds(1,:) = ght_abl(2:jpka )
za_bnds(2,:) = ght_abl(2:jpka ) + e3w_abl(2:jpka)
CALL iom_set_axis_attr( "ghw_abl", bounds=za_bnds )
CALL iom_set_axis_attr( "nfloat", (/ (REAL(ji,wp), ji=1,jpnfl) /) )
# if defined key_si3
CALL iom_set_axis_attr( "ncatice", (/ (REAL(ji,wp), ji=1,jpl) /) )
! SIMIP diagnostics (4 main arctic straits)
! remove from si3 case to general case to use dct diagnostics over
! oce+ice
! CALL iom_set_axis_attr( "nstrait", (/ (REAL(ji,wp), ji=1,4) /) )
# endif
#if defined key_top
IF( ALLOCATED(profsed) ) CALL iom_set_axis_attr( "profsed", paxis = profsed )
#endif
CALL iom_set_axis_attr( "icbcla", class_num )
CALL iom_set_axis_attr( "iax_20C", (/ REAL(20,wp) /) ) ! strange syntaxe and idea...
CALL iom_set_axis_attr( "iax_26C", (/ REAL(26,wp) /) ) ! strange syntaxe and idea...
CALL iom_set_axis_attr( "iax_28C", (/ REAL(28,wp) /) ) ! strange syntaxe and idea...
! for diaprt, we need to define an axis which size can be 1 (default) or 5 (if the file subbasins.nc exists)
INQUIRE( FILE = 'subbasins.nc', EXIST = ll_exist )
nbasin = 1 + 4 * COUNT( (/ll_exist/) )
CALL iom_set_axis_attr( "basin" , (/ (REAL(ji,wp), ji=1,nbasin) /) )
! Transport diagnostics diadct - max number of section 150 in diadct -> ! pb to ensure consistency here
IF( ln_diadct ) THEN
CALL iom_set_axis_attr( "nstrait" , (/ (REAL(ji,wp), ji=1,nb_sec) /) )
ELSE
CALL iom_set_axis_attr( "nstrait", (/ (REAL(ji,wp), ji=1,4) /) )
ENDIF
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ENDIF
!
! automatic definitions of some of the xml attributs
IF(llrstr) THEN
IF(PRESENT(kdid)) THEN
CALL iom_set_rst_context(.TRUE.)
!set which fields will be read from restart file
CALL iom_set_vars_active(kdid)
ELSE
CALL ctl_stop( 'iom_init:', 'restart read with XIOS: missing pointer to NETCDF file' )
ENDIF
ELSE IF(llrstw) THEN
CALL iom_set_rstw_file(iom_file(kdid)%name)
ELSE
CALL set_xmlatt
ENDIF
!
! set time step length
dtime%second = rn_Dt
CALL xios_set_timestep( dtime )
!
! conditional closure of context definition
IF ( ll_closedef ) CALL iom_init_closedef
!
DEALLOCATE( zt_bnds, zw_bnds )
!
#endif
!
END SUBROUTINE iom_init
SUBROUTINE iom_init_closedef(cdname)
!!----------------------------------------------------------------------
!! *** SUBROUTINE iom_init_closedef ***
!!----------------------------------------------------------------------
!!
!! ** Purpose : Closure of context definition
!!
!!----------------------------------------------------------------------
CHARACTER(len=*), OPTIONAL, INTENT(IN) :: cdname
#if defined key_xios
LOGICAL :: llrstw
llrstw = .FALSE.
IF(PRESENT(cdname)) THEN
llrstw = (cdname == cw_ocerst_cxt)
llrstw = llrstw .OR. (cdname == cw_icerst_cxt)
llrstw = llrstw .OR. (cdname == cw_ablrst_cxt)
llrstw = llrstw .OR. (cdname == cw_toprst_cxt)
llrstw = llrstw .OR. (cdname == cw_sedrst_cxt)
ENDIF
IF( llrstw ) THEN
!set names of the fields in restart file IF using XIOS to write data
CALL iom_set_rst_context(.FALSE.)
CALL xios_close_context_definition()
ELSE
CALL xios_close_context_definition()
CALL xios_update_calendar( 0 )
ENDIF
#else
IF( .FALSE. ) WRITE(numout,*) 'iom_init_closedef: should not see this' ! useless statement to avoid compilation warnings
#endif
END SUBROUTINE iom_init_closedef
SUBROUTINE iom_set_vars_active(idnum)
!!---------------------------------------------------------------------
!! *** SUBROUTINE iom_set_vars_active ***
!!
!! ** Purpose : define filename in XIOS context for reading file,
!! enable variables present in a file for reading with XIOS
!! id of the file is assumed to be rrestart.
!!---------------------------------------------------------------------
INTEGER, INTENT(IN) :: idnum
#if defined key_xios
INTEGER :: ndims, nvars, natts, unlimitedDimId, dimlen, xtype,mdims
TYPE(xios_field) :: field_hdl
TYPE(xios_file) :: file_hdl
TYPE(xios_filegroup) :: filegroup_hdl
INTEGER :: dimids(4), jv,i, idim
CHARACTER(LEN=256) :: clinfo ! info character
INTEGER, ALLOCATABLE :: indimlens(:)
CHARACTER(LEN=nf90_max_name), ALLOCATABLE :: indimnames(:)
CHARACTER(LEN=nf90_max_name) :: dimname, varname
INTEGER :: iln
CHARACTER(LEN=lc) :: fname
LOGICAL :: lmeta
!metadata in restart file for restart read with XIOS
INTEGER, PARAMETER :: NMETA = 11
CHARACTER(LEN=lc) :: meta(NMETA)
meta(1) = "nav_lat"
meta(2) = "nav_lon"
meta(3) = "nav_lev"
meta(4) = "time_instant"
meta(5) = "time_instant_bounds"
meta(6) = "time_counter"
meta(7) = "time_counter_bounds"
meta(8) = "x"
meta(9) = "y"
meta(10) = "numcat"
meta(11) = "nav_hgt"
clinfo = ' iom_set_vars_active, file: '//TRIM(iom_file(idnum)%name)
iln = INDEX( iom_file(idnum)%name, '.nc' )
!XIOS doee not need .nc
IF(iln > 0) THEN
fname = iom_file(idnum)%name(1:iln-1)
ELSE
fname = iom_file(idnum)%name
ENDIF
!set name of the restart file and enable available fields
CALL xios_get_handle("file_definition", filegroup_hdl )
CALL xios_add_child(filegroup_hdl, file_hdl, 'rrestart')
CALL xios_set_file_attr( "rrestart", name=fname, type="one_file", &
par_access="collective", enabled=.TRUE., mode="read", &
output_freq=xios_timestep )
CALL iom_nf90_check( nf90_inquire(iom_file(idnum)%nfid, ndims, nvars, natts ), clinfo )
ALLOCATE(indimlens(ndims), indimnames(ndims))
CALL iom_nf90_check( nf90_inquire(iom_file(idnum)%nfid, unlimitedDimId = unlimitedDimId ), clinfo )
DO idim = 1, ndims
CALL iom_nf90_check( nf90_inquire_dimension(iom_file(idnum)%nfid, idim, dimname, dimlen ), clinfo )
indimlens(idim) = dimlen
indimnames(idim) = dimname
ENDDO
DO jv =1, nvars
lmeta = .FALSE.
CALL iom_nf90_check( nf90_inquire_variable(iom_file(idnum)%nfid, jv, varname, xtype, ndims, dimids, natts ), clinfo )
DO i = 1, NMETA
IF(varname == meta(i)) THEN
lmeta = .TRUE.
ENDIF
ENDDO
IF(.NOT.lmeta) THEN
CALL xios_add_child(file_hdl, field_hdl, varname)
mdims = ndims
IF(ANY(dimids(1:ndims) == unlimitedDimId)) THEN
mdims = mdims - 1
ENDIF
IF(mdims == 3) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = varname, &
domain_ref="grid_N", &
axis_ref=iom_axis(indimlens(dimids(mdims))), &
prec = 8, operation = "instant" )
ELSEIF(mdims == 2) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = varname, &
domain_ref="grid_N", prec = 8, &
operation = "instant" )
ELSEIF(mdims == 1) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = varname, &
axis_ref=iom_axis(indimlens(dimids(mdims))), &
prec = 8, operation = "instant" )
ELSEIF(mdims == 0) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = varname, &
scalar_ref = "grid_scalar", prec = 8, &
operation = "instant" )
ELSE
WRITE(ctmp1,*) 'iom_set_vars_active: variable ', TRIM(varname) ,' incorrect number of dimensions'
CALL ctl_stop( 'iom_set_vars_active:', ctmp1 )
ENDIF
ENDIF
ENDDO
DEALLOCATE(indimlens, indimnames)
#endif
END SUBROUTINE iom_set_vars_active
SUBROUTINE iom_set_rstw_file(cdrst_file)
!!---------------------------------------------------------------------
!! *** SUBROUTINE iom_set_rstw_file ***
!!
!! ** Purpose : define file name in XIOS context for writing restart
!!---------------------------------------------------------------------
CHARACTER(len=*) :: cdrst_file
#if defined key_xios
TYPE(xios_file) :: file_hdl
TYPE(xios_filegroup) :: filegroup_hdl
!set name of the restart file and enable available fields
IF(lwp) WRITE(numout,*) 'Setting restart filename (for XIOS write) to: ', TRIM(cdrst_file)
CALL xios_get_handle("file_definition", filegroup_hdl )
CALL xios_add_child(filegroup_hdl, file_hdl, 'wrestart')
IF(nxioso.eq.1) THEN
CALL xios_set_file_attr( "wrestart", type="one_file", enabled=.TRUE.,&
mode="write", output_freq=xios_timestep)
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IF(lwp) write(numout,*) 'OPEN ', TRIM(cdrst_file), ' in one_file mode'
ELSE
CALL xios_set_file_attr( "wrestart", type="multiple_file", enabled=.TRUE.,&
mode="write", output_freq=xios_timestep)
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IF(lwp) write(numout,*) 'OPEN ', TRIM(cdrst_file), ' in multiple_file mode'
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CALL xios_set_file_attr( "wrestart", name=TRIM(cdrst_file))
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#endif
END SUBROUTINE iom_set_rstw_file
SUBROUTINE iom_set_rstw_active(sdfield, rd0, rs0, rd1, rs1, rd2, rs2, rd3, rs3)
!!---------------------------------------------------------------------
!! *** SUBROUTINE iom_set_rstw_active ***
!!
!! ** Purpose : define file name in XIOS context for writing restart
!! enable variables present in restart file for writing
!!---------------------------------------------------------------------
!sets enabled = .TRUE. for each field in restart file
CHARACTER(len = *), INTENT(IN) :: sdfield
REAL(dp), OPTIONAL, INTENT(IN) :: rd0
REAL(sp), OPTIONAL, INTENT(IN) :: rs0
REAL(dp), OPTIONAL, INTENT(IN), DIMENSION(:) :: rd1
REAL(sp), OPTIONAL, INTENT(IN), DIMENSION(:) :: rs1
REAL(dp), OPTIONAL, INTENT(IN), DIMENSION(:, :) :: rd2
REAL(sp), OPTIONAL, INTENT(IN), DIMENSION(:, :) :: rs2
REAL(dp), OPTIONAL, INTENT(IN), DIMENSION(:, :, :) :: rd3
REAL(sp), OPTIONAL, INTENT(IN), DIMENSION(:, :, :) :: rs3
#if defined key_xios
TYPE(xios_field) :: field_hdl
TYPE(xios_file) :: file_hdl
CALL xios_get_handle("wrestart", file_hdl)
!define fields for restart context
CALL xios_add_child(file_hdl, field_hdl, sdfield)
IF(PRESENT(rd3)) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = sdfield, &
domain_ref = "grid_N", &
axis_ref = iom_axis(size(rd3, 3)), &
prec = 8, operation = "instant" )
ELSEIF(PRESENT(rs3)) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = sdfield, &
domain_ref = "grid_N", &
axis_ref = iom_axis(size(rd3, 3)), &
prec = 4, operation = "instant" )
ELSEIF(PRESENT(rd2)) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = sdfield, &
domain_ref = "grid_N", prec = 8, &
operation = "instant" )
ELSEIF(PRESENT(rs2)) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = sdfield, &
domain_ref = "grid_N", prec = 4, &
operation = "instant" )
ELSEIF(PRESENT(rd1)) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = sdfield, &
axis_ref = iom_axis(size(rd1, 1)), &
prec = 8, operation = "instant" )
ELSEIF(PRESENT(rs1)) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = sdfield, &
axis_ref = iom_axis(size(rd1, 1)), &
prec = 4, operation = "instant" )
ELSEIF(PRESENT(rd0)) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = sdfield, &
scalar_ref = "grid_scalar", prec = 8, &
operation = "instant" )
ELSEIF(PRESENT(rs0)) THEN
CALL xios_set_attr (field_hdl, enabled = .TRUE., name = sdfield, &
scalar_ref = "grid_scalar", prec = 4, &
operation = "instant" )
ENDIF
#endif
END SUBROUTINE iom_set_rstw_active
FUNCTION iom_axis(idlev) result(axis_ref)
!!---------------------------------------------------------------------
!! *** FUNCTION iom_axis ***
!!
!! ** Purpose : Used for grid definition when XIOS is used to read/write
!! restart. Returns axis corresponding to the number of levels
!! given as an input variable. Axes are defined in routine
!! iom_set_rst_context
!!---------------------------------------------------------------------
INTEGER, INTENT(IN) :: idlev
CHARACTER(len=lc) :: axis_ref
CHARACTER(len=12) :: str
IF(idlev == jpk) THEN
axis_ref="nav_lev"
ELSEIF(idlev == jpka) THEN
axis_ref="nav_hgt"
#if defined key_si3
ELSEIF(idlev == jpl) THEN
axis_ref="numcat"
#endif
ELSE
write(str, *) idlev
CALL ctl_stop( 'iom_axis', 'Definition for axis with '//TRIM(ADJUSTL(str))//' levels missing')
ENDIF
END FUNCTION iom_axis
FUNCTION iom_xios_setid(cdname) result(kid)
!!---------------------------------------------------------------------
!! *** FUNCTION ***
!!
!! ** Purpose : this function returns first available id to keep information about file
!! sets filename in iom_file structure and sets name
!! of XIOS context depending on cdcomp
!! corresponds to iom_nf90_open
!!---------------------------------------------------------------------
CHARACTER(len=*), INTENT(in ) :: cdname ! File name
INTEGER :: kid ! identifier of the opened file
INTEGER :: jl
kid = 0
DO jl = jpmax_files, 1, -1
IF( iom_file(jl)%nfid == 0 ) kid = jl
ENDDO
iom_file(kid)%name = TRIM(cdname)
iom_file(kid)%nfid = 1
iom_file(kid)%nvars = 0
iom_file(kid)%irec = -1
END FUNCTION iom_xios_setid
SUBROUTINE iom_set_rst_context(ld_rstr)
!!---------------------------------------------------------------------
!! *** SUBROUTINE iom_set_rst_context ***
!!
!! ** Purpose : Define domain, axis and grid for restart (read/write)
!! context
!!
!!---------------------------------------------------------------------
LOGICAL, INTENT(IN) :: ld_rstr
INTEGER :: ji
#if defined key_xios
TYPE(xios_domaingroup) :: domaingroup_hdl
TYPE(xios_domain) :: domain_hdl
TYPE(xios_axisgroup) :: axisgroup_hdl
TYPE(xios_axis) :: axis_hdl
TYPE(xios_scalar) :: scalar_hdl
TYPE(xios_scalargroup) :: scalargroup_hdl
CALL xios_get_handle("domain_definition",domaingroup_hdl)
CALL xios_add_child(domaingroup_hdl, domain_hdl, "grid_N")
CALL set_grid("N", glamt, gphit, .TRUE., ld_rstr)
CALL xios_get_handle("axis_definition",axisgroup_hdl)
CALL xios_add_child(axisgroup_hdl, axis_hdl, "nav_lev")
!AGRIF fails to compile when unit= is in call to xios_set_axis_attr
! CALL xios_set_axis_attr( "nav_lev", long_name="Vertical levels", unit="m", positive="down")
CALL xios_set_axis_attr( "nav_lev", long_name = "Vertical levels in meters", positive = "down")
CALL iom_set_axis_attr( "nav_lev", paxis = gdept_1d )
#if defined key_si3
CALL xios_add_child(axisgroup_hdl, axis_hdl, "numcat")
CALL iom_set_axis_attr( "numcat", (/ (REAL(ji,wp), ji=1,jpl) /) )
#endif
CALL xios_add_child(axisgroup_hdl, axis_hdl, "nav_hgt")
CALL iom_set_axis_attr( "nav_hgt", (/ (REAL(ji,wp), ji=1,jpka) /) )
CALL xios_get_handle("scalar_definition", scalargroup_hdl)
CALL xios_add_child(scalargroup_hdl, scalar_hdl, "grid_scalar")
#endif
END SUBROUTINE iom_set_rst_context
SUBROUTINE set_xios_context(kdid, cdcont)
!!---------------------------------------------------------------------
!! *** SUBROUTINE iom_set_rst_context ***
!!
!! ** Purpose : set correct XIOS context based on kdid
!!
!!---------------------------------------------------------------------
INTEGER, INTENT(IN) :: kdid ! Identifier of the file
CHARACTER(LEN=lc), INTENT(OUT) :: cdcont ! name of the context for XIOS read/write
cdcont = "NONE"
IF(lrxios) THEN
IF(kdid == numror) THEN
cdcont = cr_ocerst_cxt
ELSEIF(kdid == numrir) THEN
cdcont = cr_icerst_cxt
ELSEIF(kdid == numrar) THEN
cdcont = cr_ablrst_cxt
ELSEIF(kdid == numrtr) THEN
cdcont = cr_toprst_cxt
ELSEIF(kdid == numrsr) THEN
cdcont = cr_sedrst_cxt
ENDIF
ENDIF
IF(lwxios) THEN
IF(kdid == numrow) THEN
cdcont = cw_ocerst_cxt
ELSEIF(kdid == numriw) THEN
cdcont = cw_icerst_cxt
ELSEIF(kdid == numraw) THEN
cdcont = cw_ablrst_cxt
ELSEIF(kdid == numrtw) THEN
cdcont = cw_toprst_cxt
ELSEIF(kdid == numrsw) THEN
cdcont = cw_sedrst_cxt
ENDIF
ENDIF
END SUBROUTINE set_xios_context
SUBROUTINE iom_swap( cdname )
!!---------------------------------------------------------------------
!! *** SUBROUTINE iom_swap ***
!!
!! ** Purpose : swap context between different agrif grid for xmlio_server
!!---------------------------------------------------------------------
CHARACTER(len=*), INTENT(in) :: cdname
Guillaume Samson
committed
CHARACTER(len=256) :: clname, cltmpn
INTEGER :: iln
#if defined key_xios
TYPE(xios_context) :: nemo_hdl
Guillaume Samson
committed
clname = TRIM(cdname)
IF ( .NOT. Agrif_Root() ) THEN
iln = INDEX(clname,'/', BACK=.TRUE.)
cltmpn = clname(1:iln)
clname = clname(iln+1:LEN_TRIM(clname))
clname = TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
Guillaume Samson
committed
CALL xios_get_handle(clname,nemo_hdl)
!
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CALL xios_set_current_context(nemo_hdl)
#endif
!
END SUBROUTINE iom_swap
SUBROUTINE iom_open( cdname, kiomid, ldwrt, ldstop, ldiof, kdlev, cdcomp )
!!---------------------------------------------------------------------
!! *** SUBROUTINE iom_open ***
!!
!! ** Purpose : open an input file (return 0 if not found)
!!---------------------------------------------------------------------
CHARACTER(len=*), INTENT(in ) :: cdname ! File name
INTEGER , INTENT( out) :: kiomid ! iom identifier of the opened file
LOGICAL , INTENT(in ), OPTIONAL :: ldwrt ! open in write modeb (default = .FALSE.)
LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if open to read a non-existing file (default = .TRUE.)
LOGICAL , INTENT(in ), OPTIONAL :: ldiof ! Interp On the Fly, needed for AGRIF (default = .FALSE.)
INTEGER , INTENT(in ), OPTIONAL :: kdlev ! number of vertical levels
CHARACTER(len=3), INTENT(in ), OPTIONAL :: cdcomp ! name of component calling iom_nf90_open
!
CHARACTER(LEN=256) :: clname ! the name of the file based on cdname [[+clcpu]+clcpu]
CHARACTER(LEN=256) :: cltmpn ! tempory name to store clname (in writting mode)
CHARACTER(LEN=10) :: clsuffix ! ".nc"
CHARACTER(LEN=15) :: clcpu ! the cpu number (max jpmax_digits digits)
CHARACTER(LEN=256) :: clinfo ! info character
LOGICAL :: llok ! check the existence
LOGICAL :: llwrt ! local definition of ldwrt
LOGICAL :: llstop ! local definition of ldstop
LOGICAL :: lliof ! local definition of ldiof
INTEGER :: icnt ! counter for digits in clcpu (max = jpmax_digits)
INTEGER :: iln, ils ! lengths of character
INTEGER :: istop !
! local number of points for x,y dimensions
! position of first local point for x,y dimensions
! position of last local point for x,y dimensions
! start halo size for x,y dimensions
! end halo size for x,y dimensions
!---------------------------------------------------------------------
! Initializations and control
! =============
kiomid = -1
clinfo = ' iom_open ~~~ '
istop = nstop
! if iom_open is called for the first time: initialize iom_file(:)%nfid to 0
! (could be done when defining iom_file in f95 but not in f90)
IF( Agrif_Root() ) THEN
IF( iom_open_init == 0 ) THEN
iom_file(:)%nfid = 0
iom_open_init = 1
ENDIF
ENDIF
! do we read or write the file?
IF( PRESENT(ldwrt) ) THEN ; llwrt = ldwrt
ELSE ; llwrt = .FALSE.
ENDIF
! do we call ctl_stop if we try to open a non-existing file in read mode?
IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
ELSE ; llstop = .TRUE.
ENDIF
! are we using interpolation on the fly?
IF( PRESENT(ldiof) ) THEN ; lliof = ldiof
ELSE ; lliof = .FALSE.
ENDIF
! create the file name by added, if needed, TRIM(Agrif_CFixed()) and TRIM(clsuffix)
! =============
Guillaume Samson
committed
clname = TRIM(cdname)
iln = INDEX(clname,'/', BACK=.TRUE.)
cltmpn = clname(1:iln)
clname = clname(iln+1:LEN_TRIM(clname))
Guillaume Samson
committed
clname = TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
ENDIF
! which suffix should we use?
clsuffix = '.nc'
! Add the suffix if needed
iln = LEN_TRIM(clname)
ils = LEN_TRIM(clsuffix)
IF( iln <= ils .OR. INDEX( TRIM(clname), TRIM(clsuffix), back = .TRUE. ) /= iln - ils + 1 ) &
& clname = TRIM(clname)//TRIM(clsuffix)
cltmpn = clname ! store this name
! try to find if the file to be opened already exist
! =============
INQUIRE( FILE = clname, EXIST = llok )
IF( .NOT.llok ) THEN
! we try to add the cpu number to the name
WRITE(clcpu,*) narea-1
clcpu = TRIM(ADJUSTL(clcpu))
iln = INDEX(clname,TRIM(clsuffix), back = .TRUE.)
clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
icnt = 0
INQUIRE( FILE = clname, EXIST = llok )
! we try different formats for the cpu number by adding 0
DO WHILE( .NOT.llok .AND. icnt < jpmax_digits )
Guillaume Samson
committed
clcpu = "0"//TRIM(clcpu)
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clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
INQUIRE( FILE = clname, EXIST = llok )
icnt = icnt + 1
END DO
ELSE
lxios_sini = .TRUE.
ENDIF
! Open the NetCDF file
! =============
! do we have some free file identifier?
IF( MINVAL(iom_file(:)%nfid) /= 0 ) &
& CALL ctl_stop( TRIM(clinfo), 'No more free file identifier', 'increase jpmax_files in iom_def' )
! if no file was found...
IF( .NOT. llok ) THEN
IF( .NOT. llwrt ) THEN ! we are in read mode
IF( llstop ) THEN ; CALL ctl_stop( TRIM(clinfo), 'File '//TRIM(cltmpn)//'* not found' )
ELSE ; istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
ENDIF
ELSE ! we are in write mode so we
clname = cltmpn ! get back the file name without the cpu number
ENDIF
ELSE
IF( llwrt .AND. .NOT. ln_clobber ) THEN ! we stop as we want to write in a new file
CALL ctl_stop( TRIM(clinfo), 'We want to write in a new file but '//TRIM(clname)//' already exists...' )
istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
ELSEIF( llwrt ) THEN ! the file exists and we are in write mode with permission to
clname = cltmpn ! overwrite so get back the file name without the cpu number
ENDIF
ENDIF
IF( istop == nstop ) THEN ! no error within this routine
CALL iom_nf90_open( clname, kiomid, llwrt, llok, kdlev = kdlev, cdcomp = cdcomp )
ENDIF
!
END SUBROUTINE iom_open
SUBROUTINE iom_close( kiomid )
!!--------------------------------------------------------------------
!! *** SUBROUTINE iom_close ***
!!
!! ** Purpose : close an input file, or all files opened by iom
!!--------------------------------------------------------------------
INTEGER, INTENT(inout), OPTIONAL :: kiomid ! iom identifier of the file to be closed
! ! return 0 when file is properly closed
! ! No argument: all files opened by iom are closed
INTEGER :: jf ! dummy loop indices
INTEGER :: i_s, i_e ! temporary integer
CHARACTER(LEN=100) :: clinfo ! info character
!---------------------------------------------------------------------
!
IF( iom_open_init == 0 ) RETURN ! avoid to use iom_file(jf)%nfid that us not yet initialized
!
clinfo = ' iom_close ~~~ '
IF( PRESENT(kiomid) ) THEN
i_s = kiomid
i_e = kiomid
ELSE
i_s = 1
i_e = jpmax_files
ENDIF
IF( i_s > 0 ) THEN
DO jf = i_s, i_e
IF( iom_file(jf)%nfid > 0 ) THEN
CALL iom_nf90_close( jf )
iom_file(jf)%nfid = 0 ! free the id
IF( PRESENT(kiomid) ) kiomid = 0 ! return 0 as id to specify that the file was closed
IF(lwp) WRITE(numout,*) TRIM(clinfo)//' close file: '//TRIM(iom_file(jf)%name)//' ok'
ELSEIF( PRESENT(kiomid) ) THEN
WRITE(ctmp1,*) '--->', kiomid
CALL ctl_stop( TRIM(clinfo)//' Invalid file identifier', ctmp1 )
ENDIF
END DO
ENDIF
!
END SUBROUTINE iom_close
FUNCTION iom_varid ( kiomid, cdvar, kdimsz, kndims, lduld, ldstop )
!!-----------------------------------------------------------------------
!! *** FUNCTION iom_varid ***
!!
!! ** Purpose : get the id of a variable in a file (return 0 if not found)
!!-----------------------------------------------------------------------
INTEGER , INTENT(in ) :: kiomid ! file Identifier
CHARACTER(len=*) , INTENT(in ) :: cdvar ! name of the variable
INTEGER, DIMENSION(:), INTENT( out), OPTIONAL :: kdimsz ! size of each dimension
INTEGER , INTENT( out), OPTIONAL :: kndims ! number of dimensions
LOGICAL , INTENT( out), OPTIONAL :: lduld ! true if the last dimension is unlimited (time)
LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if looking for non-existing variable (default = .TRUE.)
!
INTEGER :: iom_varid, iiv, i_nvd
LOGICAL :: ll_fnd
CHARACTER(LEN=100) :: clinfo ! info character
LOGICAL :: llstop ! local definition of ldstop
!!-----------------------------------------------------------------------
iom_varid = 0 ! default definition
! do we call ctl_stop if we look for non-existing variable?
IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
ELSE ; llstop = .TRUE.
ENDIF
!
IF( kiomid > 0 ) THEN
Guillaume Samson
committed
clinfo = 'iom_varid, file: '//TRIM(iom_file(kiomid)%name)//', var: '//TRIM(cdvar)
Guillaume Samson
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CALL ctl_stop( TRIM(clinfo), 'the file is not open' )
ELSE
ll_fnd = .FALSE.
iiv = 0
!
DO WHILE ( .NOT.ll_fnd .AND. iiv < iom_file(kiomid)%nvars )
iiv = iiv + 1
ll_fnd = ( TRIM(cdvar) == TRIM(iom_file(kiomid)%cn_var(iiv)) )
END DO
!
IF( .NOT.ll_fnd ) THEN
iiv = iiv + 1
IF( iiv <= jpmax_vars ) THEN
iom_varid = iom_nf90_varid( kiomid, cdvar, iiv, kdimsz, kndims, lduld )
ELSE
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committed
CALL ctl_stop( TRIM(clinfo), 'Too many variables in the file '//iom_file(kiomid)%name, &
& 'increase the parameter jpmax_vars')
ENDIF
IF( llstop .AND. iom_varid == -1 ) CALL ctl_stop( TRIM(clinfo)//' not found' )
ELSE
iom_varid = iiv
IF( PRESENT(kdimsz) ) THEN
i_nvd = iom_file(kiomid)%ndims(iiv)
IF( i_nvd <= size(kdimsz) ) THEN
kdimsz(1:i_nvd) = iom_file(kiomid)%dimsz(1:i_nvd,iiv)
ELSE
WRITE(ctmp1,*) i_nvd, size(kdimsz)
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committed
CALL ctl_stop( TRIM(clinfo), 'error in kdimsz size'//TRIM(ctmp1) )
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ENDIF
ENDIF
IF( PRESENT(kndims) ) kndims = iom_file(kiomid)%ndims(iiv)
IF( PRESENT( lduld) ) lduld = iom_file(kiomid)%luld( iiv)
ENDIF
ENDIF
ENDIF
!
END FUNCTION iom_varid
!!----------------------------------------------------------------------
!! INTERFACE iom_get
!!----------------------------------------------------------------------
SUBROUTINE iom_g0d_sp( kiomid, cdvar, pvar, ktime )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
REAL(sp) , INTENT( out) :: pvar ! read field
REAL(dp) :: ztmp_pvar ! tmp var to read field
INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
!
INTEGER :: idvar ! variable id
INTEGER :: idmspc ! number of spatial dimensions
INTEGER , DIMENSION(1) :: itime ! record number
CHARACTER(LEN=100) :: clinfo ! info character
CHARACTER(LEN=100) :: clname ! file name
CHARACTER(LEN=1) :: cldmspc !
CHARACTER(LEN=lc) :: context
!
CALL set_xios_context(kiomid, context)
IF(context == "NONE") THEN ! read data using default library
itime = 1
IF( PRESENT(ktime) ) itime = ktime
!
clname = iom_file(kiomid)%name
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committed
clinfo = ' iom_g0d, file: '//TRIM(clname)//', var: '//TRIM(cdvar)
!
IF( kiomid > 0 ) THEN
idvar = iom_varid( kiomid, cdvar )
IF( iom_file(kiomid)%nfid > 0 .AND. idvar > 0 ) THEN
idmspc = iom_file ( kiomid )%ndims( idvar )
IF( iom_file(kiomid)%luld(idvar) ) idmspc = idmspc - 1
WRITE(cldmspc , fmt='(i1)') idmspc
IF( idmspc > 0 ) CALL ctl_stop( TRIM(clinfo), 'When reading to a 0D array, we do not accept data', &
& 'with 1 or more spatial dimensions: '//cldmspc//' were found.' , &
& 'Use ncwa -a to suppress the unnecessary dimensions' )
CALL iom_nf90_get( kiomid, idvar, ztmp_pvar, itime )
pvar = ztmp_pvar
ENDIF
ENDIF
ELSE
#if defined key_xios
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IF(lwp) WRITE(numout,*) 'XIOS RST READ (0D): ', TRIM(cdvar)
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committed
CALL xios_recv_field( TRIM(cdvar), pvar)
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committed
WRITE(ctmp1,*) 'Can not use XIOS in iom_g0d, file: '//TRIM(clname)//', var:'//TRIM(cdvar)
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CALL ctl_stop( 'iom_g0d', ctmp1 )
#endif
ENDIF
END SUBROUTINE iom_g0d_sp
SUBROUTINE iom_g0d_dp( kiomid, cdvar, pvar, ktime )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
REAL(dp) , INTENT( out) :: pvar ! read field
INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
!
INTEGER :: idvar ! variable id
INTEGER :: idmspc ! number of spatial dimensions
INTEGER , DIMENSION(1) :: itime ! record number
CHARACTER(LEN=100) :: clinfo ! info character
CHARACTER(LEN=100) :: clname ! file name
CHARACTER(LEN=1) :: cldmspc !
CHARACTER(LEN=lc) :: context
!
CALL set_xios_context(kiomid, context)
IF(context == "NONE") THEN ! read data using default library
itime = 1
IF( PRESENT(ktime) ) itime = ktime
!
clname = iom_file(kiomid)%name
Guillaume Samson
committed
clinfo = ' iom_g0d, file: '//TRIM(clname)//', var: '//TRIM(cdvar)
!
IF( kiomid > 0 ) THEN
idvar = iom_varid( kiomid, cdvar )
IF( iom_file(kiomid)%nfid > 0 .AND. idvar > 0 ) THEN
idmspc = iom_file ( kiomid )%ndims( idvar )
IF( iom_file(kiomid)%luld(idvar) ) idmspc = idmspc - 1
WRITE(cldmspc , fmt='(i1)') idmspc
IF( idmspc > 0 ) CALL ctl_stop( TRIM(clinfo), 'When reading to a 0D array, we do not accept data', &
& 'with 1 or more spatial dimensions: '//cldmspc//' were found.' , &
& 'Use ncwa -a to suppress the unnecessary dimensions' )
CALL iom_nf90_get( kiomid, idvar, pvar, itime )
ENDIF
ENDIF
ELSE
#if defined key_xios
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committed
IF(lwp) WRITE(numout,*) 'XIOS RST READ (0D): ', TRIM(cdvar)
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committed
CALL xios_recv_field( TRIM(cdvar), pvar)
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committed
WRITE(ctmp1,*) 'Can not use XIOS in iom_g0d, file: '//TRIM(clname)//', var:'//TRIM(cdvar)
CALL ctl_stop( 'iom_g0d', ctmp1 )
#endif
ENDIF
END SUBROUTINE iom_g0d_dp
SUBROUTINE iom_g1d_sp( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
REAL(sp) , INTENT( out), DIMENSION(:) :: pvar ! read field
INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kstart ! start axis position of the reading
INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kcount ! number of points in each axis
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom, cdvar, pvsp1d = pvar, &
& ktime = ktime, kstart = kstart, kcount = kcount )
ENDIF
END SUBROUTINE iom_g1d_sp
SUBROUTINE iom_g1d_dp( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
REAL(dp) , INTENT( out), DIMENSION(:) :: pvar ! read field
INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kstart ! start axis position of the reading
INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kcount ! number of points in each axis
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom, cdvar, pvdp1d = pvar, &
& ktime = ktime, kstart = kstart, kcount = kcount)
ENDIF
END SUBROUTINE iom_g1d_dp
SUBROUTINE iom_g2d_sp( kiomid, kdom, cdvar, pvar, ktime, cd_type, psgn, kfill, kstart, kcount)
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
REAL(sp) , INTENT( out), DIMENSION(:,:) :: pvar ! read field
INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
CHARACTER(len=1), INTENT(in ) , OPTIONAL :: cd_type ! nature of grid-points (T, U, V, F, W)
REAL(sp) , INTENT(in ) , OPTIONAL :: psgn ! -1.(1.): (not) change sign across the north fold
INTEGER , INTENT(in ) , OPTIONAL :: kfill ! value of kfillmode in lbc_lbk
INTEGER , INTENT(in ), DIMENSION(2), OPTIONAL :: kstart ! start axis position of the reading
INTEGER , INTENT(in ), DIMENSION(2), OPTIONAL :: kcount ! number of points in each axis
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom, cdvar, pvsp2d = pvar, &
& cd_type = cd_type, psgn_sp = psgn, kfill = kfill, &
& ktime = ktime, kstart = kstart, kcount = kcount )
ENDIF
END SUBROUTINE iom_g2d_sp
SUBROUTINE iom_g2d_dp( kiomid, kdom, cdvar, pvar, ktime, cd_type, psgn, kfill, kstart, kcount)
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
REAL(dp) , INTENT( out), DIMENSION(:,:) :: pvar ! read field
INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
CHARACTER(len=1), INTENT(in ) , OPTIONAL :: cd_type ! nature of grid-points (T, U, V, F, W)
REAL(dp) , INTENT(in ) , OPTIONAL :: psgn ! -1.(1.): (not) change sign across the north fold
INTEGER , INTENT(in ) , OPTIONAL :: kfill ! value of kfillmode in lbc_lbk
INTEGER , INTENT(in ), DIMENSION(2), OPTIONAL :: kstart ! start axis position of the reading
INTEGER , INTENT(in ), DIMENSION(2), OPTIONAL :: kcount ! number of points in each axis
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom, cdvar, pvdp2d = pvar, &
& cd_type = cd_type, psgn_dp = psgn, kfill = kfill, &
& ktime = ktime, kstart = kstart, kcount = kcount )
ENDIF
END SUBROUTINE iom_g2d_dp
SUBROUTINE iom_g3d_sp( kiomid, kdom, cdvar, pvar, ktime, cd_type, psgn, kfill, kstart, kcount )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
REAL(sp) , INTENT( out), DIMENSION(:,:,:) :: pvar ! read field
INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
CHARACTER(len=1), INTENT(in ) , OPTIONAL :: cd_type ! nature of grid-points (T, U, V, F, W)
REAL(sp) , INTENT(in ) , OPTIONAL :: psgn ! -1.(1.) : (not) change sign across the north fold
INTEGER , INTENT(in ) , OPTIONAL :: kfill ! value of kfillmode in lbc_lbk
INTEGER , INTENT(in ), DIMENSION(3), OPTIONAL :: kstart ! start axis position of the reading
INTEGER , INTENT(in ), DIMENSION(3), OPTIONAL :: kcount ! number of points in each axis
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom, cdvar, pvsp3d = pvar, &
& cd_type = cd_type, psgn_sp = psgn, kfill = kfill, &
& ktime = ktime, kstart = kstart, kcount = kcount )
ENDIF
END SUBROUTINE iom_g3d_sp
SUBROUTINE iom_g3d_dp( kiomid, kdom, cdvar, pvar, ktime, cd_type, psgn, kfill, kstart, kcount )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
REAL(dp) , INTENT( out), DIMENSION(:,:,:) :: pvar ! read field
INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
CHARACTER(len=1), INTENT(in ) , OPTIONAL :: cd_type ! nature of grid-points (T, U, V, F, W)
REAL(dp) , INTENT(in ) , OPTIONAL :: psgn ! -1.(1.) : (not) change sign across the north fold
INTEGER , INTENT(in ) , OPTIONAL :: kfill ! value of kfillmode in lbc_lbk
INTEGER , INTENT(in ), DIMENSION(3), OPTIONAL :: kstart ! start axis position of the reading
INTEGER , INTENT(in ), DIMENSION(3), OPTIONAL :: kcount ! number of points in each axis
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom, cdvar, pvdp3d = pvar, &
& cd_type = cd_type, psgn_dp = psgn, kfill = kfill, &
& ktime = ktime, kstart = kstart, kcount = kcount )
ENDIF
END SUBROUTINE iom_g3d_dp
!!----------------------------------------------------------------------
SUBROUTINE iom_get_123d( kiomid , kdom, cdvar, pvsp1d, pvsp2d, pvsp3d, pvdp1d, pvdp2d, pvdp3d, &
& ktime , cd_type, psgn_sp, psgn_dp, kfill, kstart, kcount )
!!-----------------------------------------------------------------------
!! *** ROUTINE iom_get_123d ***
!!
!! ** Purpose : read a 1D/2D/3D variable
!!
!! ** Method : read ONE record at each CALL
!!-----------------------------------------------------------------------
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
CHARACTER(len=*) , INTENT(in ) :: cdvar ! Name of the variable
REAL(sp), DIMENSION(:) , INTENT( out), OPTIONAL :: pvsp1d ! read field (1D case), single precision
REAL(sp), DIMENSION(:,:) , INTENT( out), OPTIONAL :: pvsp2d ! read field (2D case), single precision
REAL(sp), DIMENSION(:,:,:) , INTENT( out), OPTIONAL :: pvsp3d ! read field (3D case), single precision
REAL(dp), DIMENSION(:) , INTENT( out), OPTIONAL :: pvdp1d ! read field (1D case), double precision
REAL(dp), DIMENSION(:,:) , INTENT( out), OPTIONAL :: pvdp2d ! read field (2D case), double precision
REAL(dp), DIMENSION(:,:,:) , INTENT( out), OPTIONAL :: pvdp3d ! read field (3D case), double precision
INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
CHARACTER(len=1) , INTENT(in ), OPTIONAL :: cd_type ! nature of grid-points (T, U, V, F, W)
REAL(sp) , INTENT(in ), OPTIONAL :: psgn_sp ! -1.(1.) : (not) change sign across the north fold
REAL(dp) , INTENT(in ), OPTIONAL :: psgn_dp ! -1.(1.) : (not) change sign across the north fold
INTEGER , INTENT(in ), OPTIONAL :: kfill ! value of kfillmode in lbc_lbk
INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kstart ! start position of the reading in each axis
INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kcount ! number of points to be read in each axis
!
LOGICAL :: llok ! true if ok!
INTEGER :: jl ! loop on number of dimension
INTEGER :: idom ! type of domain
INTEGER :: idvar ! id of the variable
INTEGER :: inbdim ! number of dimensions of the variable
INTEGER :: idmspc ! number of spatial dimensions
INTEGER :: itime ! record number
INTEGER :: istop ! temporary value of nstop
INTEGER :: ix1, ix2, iy1, iy2 ! subdomain indexes
INTEGER :: ji, jj ! loop counters
INTEGER :: irankpv !
INTEGER :: ind1, ind2 ! substring index
INTEGER, DIMENSION(jpmax_dims) :: istart ! starting point to read for each axis
INTEGER, DIMENSION(jpmax_dims) :: icnt ! number of value to read along each axis
INTEGER, DIMENSION(jpmax_dims) :: idimsz ! size of the dimensions of the variable
INTEGER, DIMENSION(jpmax_dims) :: ishape ! size of the dimensions of the variable
REAL(sp) :: zscf_sp, zofs_sp ! sacle_factor and add_offset, single precision
REAL(dp) :: zscf_dp, zofs_dp ! sacle_factor and add_offset, double precision
REAL(sp) :: zsgn_sp ! local value of psgn, single precision
REAL(dp) :: zsgn_dp ! local value of psgn, double precision
INTEGER :: itmp ! temporary integer
CHARACTER(LEN=256) :: clinfo ! info character
CHARACTER(LEN=256) :: clname ! file name
CHARACTER(LEN=1) :: clrankpv, cldmspc !
CHARACTER(LEN=1) :: cl_type ! local value of cd_type
LOGICAL :: ll_only3rd ! T => if kstart, kcount present then *only* use values for 3rd spatial dimension.
LOGICAL :: llis1d, llis2d, llis3d
LOGICAL :: llsp ! use single precision
INTEGER :: inlev ! number of levels for 3D data
!---------------------------------------------------------------------
CHARACTER(LEN=lc) :: context
!
CALL set_xios_context(kiomid, context)
!
llsp = PRESENT(pvsp1d) .OR. PRESENT(pvsp2d) .OR. PRESENT(pvsp3d)
IF( llsp ) THEN
llis1d = PRESENT(pvsp1d) ; IF( llis1d ) ishape(1:1) = SHAPE(pvsp1d)
llis2d = PRESENT(pvsp2d) ; IF( llis2d ) ishape(1:2) = SHAPE(pvsp2d)
llis3d = PRESENT(pvsp3d) ; IF( llis3d ) ishape(1:3) = SHAPE(pvsp3d)
ELSE
llis1d = PRESENT(pvdp1d) ; IF( llis1d ) ishape(1:1) = SHAPE(pvdp1d)
llis2d = PRESENT(pvdp2d) ; IF( llis2d ) ishape(1:2) = SHAPE(pvdp2d)
llis3d = PRESENT(pvdp3d) ; IF( llis3d ) ishape(1:3) = SHAPE(pvdp3d)
ENDIF
IF( llis3d ) inlev = ishape(3)
!
idom = kdom
istop = nstop
!
IF(context == "NONE") THEN
clname = iom_file(kiomid)%name ! esier to read
Guillaume Samson
committed
clinfo = ' iom_get_123d, file: '//TRIM(clname)//', var: '//TRIM(cdvar)
Guillaume Samson
committed
IF( PRESENT(kcount) .AND. .NOT. PRESENT(kstart) ) CALL ctl_stop(TRIM(clinfo), 'kcount present needs kstart present')
IF( PRESENT(kstart) .AND. .NOT. PRESENT(kcount) ) CALL ctl_stop(TRIM(clinfo), 'kstart present needs kcount present')
IF( PRESENT(kstart) .AND. idom /= jpdom_unknown .AND. idom /= jpdom_auto_xy ) &
& CALL ctl_stop(TRIM(clinfo), 'kstart present needs idom = jpdom_unknown or idom = jpdom_auto_xy')
IF( idom == jpdom_auto_xy .AND. .NOT. PRESENT(kstart) ) &
& CALL ctl_stop(TRIM(clinfo), 'idom = jpdom_auto_xy requires kstart to be present')
!
! Search for the variable in the data base (eventually actualize data)
!
idvar = iom_varid( kiomid, cdvar )
IF( idvar > 0 ) THEN
!
idimsz(:) = iom_file(kiomid)%dimsz(:, idvar) ! to write iom_file(kiomid)%dimsz in a shorter way
inbdim = iom_file(kiomid)%ndims(idvar) ! number of dimensions in the file
idmspc = inbdim ! number of spatial dimensions in the file
IF( iom_file(kiomid)%luld(idvar) ) idmspc = inbdim - 1
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committed
IF( idmspc > 3 ) CALL ctl_stop(TRIM(clinfo), 'the file has more than 3 spatial dimensions this case is not coded...')
!
! Identify the domain in case of jpdom_auto definition
IF( idom == jpdom_auto .OR. idom == jpdom_auto_xy ) THEN
idom = jpdom_global ! default
! else: if the file name finishes with _xxxx.nc with xxxx any number
ind1 = INDEX( clname, '_', back = .TRUE. ) + 1
ind2 = INDEX( clname, '.', back = .TRUE. ) - 1
IF( ind2 > ind1 ) THEN ; IF( VERIFY( clname(ind1:ind2), '0123456789' ) == 0 ) idom = jpdom_local ; ENDIF
ENDIF
!
! check the consistency between input array and data rank in the file
!
! initializations
itime = 1
IF( PRESENT(ktime) ) itime = ktime
!
irankpv = 1 * COUNT( (/ llis1d /) ) + 2 * COUNT( (/ llis2d /) ) + 3 * COUNT( (/ llis3d /) )
WRITE(clrankpv, fmt='(i1)') irankpv
WRITE(cldmspc , fmt='(i1)') idmspc
!
IF( idmspc < irankpv ) THEN ! it seems we want to read more than we can...
IF( llis3d .AND. idmspc == 2 ) THEN ! 3D input array from 2D spatial data in the file:
llok = inlev == 1 ! -> 3rd dimension must be equal to 1
ELSEIF( llis3d .AND. idmspc == 1 ) THEN ! 3D input array from 1D spatial data in the file:
llok = inlev == 1 .AND. ishape(2) == 1 ! -> 2nd and 3rd dimensions must be equal to 1
ELSEIF( llis3d .AND. idmspc == 2 ) THEN ! 2D input array from 1D spatial data in the file:
llok = ishape(2) == 1 ! -> 2nd dimension must be equal to 1
ELSE
llok = .FALSE.
ENDIF
IF( .NOT. llok ) CALL ctl_stop( TRIM(clinfo), 'The file has only '//cldmspc//' spatial dimension', &
& '=> cannot read a true '//clrankpv//'D array from this file...' )
ELSEIF( idmspc == irankpv ) THEN
IF( llis1d .AND. idom /= jpdom_unknown ) &
& CALL ctl_stop( TRIM(clinfo), 'case not coded...You must use jpdom_unknown' )
ELSEIF( idmspc > irankpv ) THEN ! it seems we want to read less than we should...
IF( llis2d .AND. itime == 1 .AND. idimsz(3) == 1 .AND. idmspc == 3 ) THEN
Guillaume Samson
committed
CALL ctl_warn( TRIM(clinfo), '2D array input but 3 spatial dimensions in the file...' , &
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& 'As the size of the z dimension is 1 and as we try to read the first record, ', &
& 'we accept this case, even if there is a possible mix-up between z and time dimension' )
idmspc = idmspc - 1
!!GS: possibility to read 3D ABL atmopsheric forcing and use 1st level to force BULK simulation
!ELSE
! CALL ctl_stop( TRIM(clinfo), 'To keep iom lisibility, when reading a '//clrankpv//'D array,', &
! & 'we do not accept data with '//cldmspc//' spatial dimensions' , &
! & 'Use ncwa -a to suppress the unnecessary dimensions' )
ENDIF
ENDIF
!
! definition of istart and icnt
!
icnt (:) = 1 ! default definition (simple way to deal with special cases listed above)
istart(:) = 1 ! default definition (simple way to deal with special cases listed above)
istart(idmspc+1) = itime ! temporal dimenstion
!
IF( idom == jpdom_unknown ) THEN
IF( PRESENT(kstart) .AND. idom /= jpdom_auto_xy ) THEN
istart(1:idmspc) = kstart(1:idmspc)
icnt (1:idmspc) = kcount(1:idmspc)
ELSE
icnt (1:idmspc) = idimsz(1:idmspc)
ENDIF
ELSE ! not a 1D array as pv(sd)p1d requires jpdom_unknown
! we do not read the overlap and the extra-halos -> from Nis0 to Nie0 and from Njs0 to Nje0
IF( idom == jpdom_global ) istart(1:2) = (/ mig0(Nis0), mjg0(Njs0) /)
icnt(1:2) = (/ Ni_0, Nj_0 /)
IF( idom == jpdom_auto_xy ) THEN
istart(3) = kstart(3)
icnt (3) = kcount(3)
ELSE
icnt (3) = inlev
ENDIF
ENDIF
ENDIF
!
! check that istart and icnt can be used with this file
!-
DO jl = 1, jpmax_dims
itmp = istart(jl)+icnt(jl)-1
IF( itmp > idimsz(jl) .AND. idimsz(jl) /= 0 ) THEN
WRITE( ctmp1, FMT="('(istart(', i1, ') + icnt(', i1, ') - 1) = ', i5)" ) jl, jl, itmp
WRITE( ctmp2, FMT="(' is larger than idimsz(', i1,') = ', i5)" ) jl, idimsz(jl)
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CALL ctl_stop( TRIM(clinfo), 'start and count too big regarding to the size of the data, ', ctmp1, ctmp2 )
ENDIF
END DO
!
! check that icnt matches the input array
!-
IF( idom == jpdom_unknown ) THEN
ctmp1 = 'd'
ELSE ! we must redefine ishape as we don't read the full array
IF( llis2d ) THEN
IF( llsp ) THEN ; ishape(1:2) = SHAPE(pvsp2d(Nis0:Nie0,Njs0:Nje0 ))
ELSE ; ishape(1:2) = SHAPE(pvdp2d(Nis0:Nie0,Njs0:Nje0 ))
ENDIF
ctmp1 = 'd(Nis0:Nie0,Njs0:Nje0)'
IF( llis3d ) THEN
IF( llsp ) THEN ; ishape(1:3) = SHAPE(pvsp3d(Nis0:Nie0,Njs0:Nje0,:))
ELSE ; ishape(1:3) = SHAPE(pvdp3d(Nis0:Nie0,Njs0:Nje0,:))
ENDIF
ctmp1 = 'd(Nis0:Nie0,Njs0:Nje0,:)'
ENDIF
ENDIF
DO jl = 1, irankpv
WRITE( ctmp2, FMT="(', ', i1,'): ', i5,' /= icnt(', i1,'):', i5)" ) jl, ishape(jl), jl, icnt(jl)
IF( llsp ) THEN
IF( ishape(jl) /= icnt(jl) ) CALL ctl_stop( TRIM(clinfo), 'size(pvsp'//clrankpv//TRIM(ctmp1)//TRIM(ctmp2) )
ELSE
IF( ishape(jl) /= icnt(jl) ) CALL ctl_stop( TRIM(clinfo), 'size(pvdp'//clrankpv//TRIM(ctmp1)//TRIM(ctmp2) )
ENDIF
END DO
ENDIF
! read the data
!-
IF( idvar > 0 .AND. istop == nstop ) THEN ! no additional errors until this point...
!
! find the right index of the array to be read
IF( idom /= jpdom_unknown ) THEN ; ix1 = Nis0 ; ix2 = Nie0 ; iy1 = Njs0 ; iy2 = Nje0
ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
ENDIF
CALL iom_nf90_get( kiomid, idvar, inbdim, istart, icnt, ix1, ix2, iy1, iy2, &
& pvsp1d, pvsp2d, pvsp3d, pvdp1d, pvdp2d, pvdp3d )
IF( istop == nstop ) THEN ! no additional errors until this point...
IF(lwp) WRITE(numout,"(10x,' read ',a,' (rec: ',i6,') in ',a,' ok')") TRIM(cdvar), itime, TRIM(iom_file(kiomid)%name)
cl_type = 'T'
IF( PRESENT(cd_type) ) cl_type = cd_type
IF( llsp ) THEN
zsgn_sp = 1._sp
IF( PRESENT(psgn_sp) ) zsgn_sp = psgn_sp
IF( llis2d .AND. idom /= jpdom_unknown .AND. cl_type /= 'Z' ) THEN
CALL lbc_lnk( 'iom', pvsp2d, cl_type, zsgn_sp, kfillmode = kfill )
ELSEIF( llis3d .AND. idom /= jpdom_unknown .AND. cl_type /= 'Z' ) THEN
CALL lbc_lnk( 'iom', pvsp3d, cl_type, zsgn_sp, kfillmode = kfill )
ENDIF
ELSE
zsgn_dp = 1._dp
IF( PRESENT(psgn_dp) ) zsgn_dp = psgn_dp
IF( llis2d .AND. idom /= jpdom_unknown .AND. cl_type /= 'Z' ) THEN
CALL lbc_lnk( 'iom', pvdp2d, cl_type, zsgn_dp, kfillmode = kfill )
ELSEIF( llis3d .AND. idom /= jpdom_unknown .AND. cl_type /= 'Z' ) THEN
CALL lbc_lnk( 'iom', pvdp3d, cl_type, zsgn_dp, kfillmode = kfill )
ENDIF
!--- overlap areas and extra hallows (mpp)
!
ELSE
! return if istop == nstop is false
RETURN
ENDIF
ELSE
! return if statment idvar > 0 .AND. istop == nstop is false
RETURN
ENDIF
!
ELSE ! read using XIOS. Only if key_xios is defined
#if defined key_xios
!would be good to be able to check which context is active and swap only if current is not restart
idvar = iom_varid( kiomid, cdvar )
CALL iom_swap(context)
IF( llsp ) THEN
zsgn_sp = 1._sp ; IF( PRESENT(psgn_sp) ) zsgn_sp = psgn_sp
ELSE
zsgn_dp = 1._dp ; IF( PRESENT(psgn_dp) ) zsgn_dp = psgn_dp
ENDIF
cl_type = 'T'
IF( PRESENT(cd_type) ) cl_type = cd_type
IF(lwp) WRITE(numout,*) 'XIOS RST READ (3D): ',TRIM(cdvar)
IF( llsp ) THEN ; CALL xios_recv_field( TRIM(cdvar), pvsp3d )
ELSE ; CALL xios_recv_field( TRIM(cdvar), pvdp3d )
ENDIF
IF( llsp ) THEN ; CALL lbc_lnk( 'iom', pvsp3d, cl_type, zsgn_sp, kfillmode = kfill)
ELSE ; CALL lbc_lnk( 'iom', pvdp3d, cl_type, zsgn_dp, kfillmode = kfill)
ENDIF
IF(lwp) WRITE(numout,*) 'XIOS RST READ (2D): ', TRIM(cdvar)
IF( llsp ) THEN ; CALL xios_recv_field( TRIM(cdvar), pvsp2d )
ELSE ; CALL xios_recv_field( TRIM(cdvar), pvdp2d )
ENDIF
IF( llsp ) THEN ; CALL lbc_lnk('iom', pvsp2d, cl_type, zsgn_sp, kfillmode = kfill)
ELSE ; CALL lbc_lnk('iom', pvdp2d, cl_type, zsgn_dp, kfillmode = kfill)
ENDIF
IF(lwp) WRITE(numout,*) 'XIOS RST READ (1D): ', TRIM(cdvar)
IF( llsp ) THEN ; CALL xios_recv_field( TRIM(cdvar), pvsp1d )
ELSE ; CALL xios_recv_field( TRIM(cdvar), pvdp1d )
ENDIF
ENDIF
CALL iom_swap(cxios_context)
#else
istop = istop + 1
Guillaume Samson
committed
clinfo = 'Can not use XIOS in iom_get_123d, file: '//TRIM(clname)//', var:'//TRIM(cdvar)
#endif
ENDIF
!--- Apply scale_factor and offset
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IF( llsp ) THEN
zscf_sp = iom_file(kiomid)%scf(idvar) ! scale factor
zofs_sp = iom_file(kiomid)%ofs(idvar) ! offset
IF( llis1d ) THEN
IF( zscf_sp /= 1._sp ) pvsp1d(: ) = pvsp1d(: ) * zscf_sp
IF( zofs_sp /= 0._sp ) pvsp1d(: ) = pvsp1d(: ) + zofs_sp
ELSEIF( llis2d ) THEN
IF( zscf_sp /= 1._sp ) pvsp2d(:,: ) = pvsp2d(:,: ) * zscf_sp
IF( zofs_sp /= 0._sp ) pvsp2d(:,: ) = pvsp2d(:,: ) + zofs_sp
ELSEIF( llis3d ) THEN
IF( zscf_sp /= 1._sp ) pvsp3d(:,:,:) = pvsp3d(:,:,:) * zscf_sp
IF( zofs_sp /= 0._sp ) pvsp3d(:,:,:) = pvsp3d(:,:,:) + zofs_sp
ENDIF
ELSE
zscf_dp = iom_file(kiomid)%scf(idvar) ! scale factor
zofs_dp = iom_file(kiomid)%ofs(idvar) ! offset
IF( llis1d ) THEN
IF( zscf_dp /= 1._dp ) pvdp1d(: ) = pvdp1d(: ) * zscf_dp
IF( zofs_dp /= 0._dp ) pvdp1d(: ) = pvdp1d(: ) + zofs_dp
ELSEIF( llis2d ) THEN
IF( zscf_dp /= 1._dp ) pvdp2d(:,: ) = pvdp2d(:,: ) * zscf_dp
IF( zofs_dp /= 0._dp ) pvdp2d(:,: ) = pvdp2d(:,: ) + zofs_dp
ELSEIF( llis3d ) THEN
IF( zscf_dp /= 1._dp ) pvdp3d(:,:,:) = pvdp3d(:,:,:) * zscf_dp
IF( zofs_dp /= 0._dp ) pvdp3d(:,:,:) = pvdp3d(:,:,:) + zofs_dp
ENDIF
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ENDIF
!
END SUBROUTINE iom_get_123d
SUBROUTINE iom_get_var( cdname, z2d)
CHARACTER(LEN=*), INTENT(in ) :: cdname
REAL(wp), DIMENSION(jpi,jpj) :: z2d
#if defined key_xios
IF( xios_field_is_active( cdname, at_current_timestep_arg = .TRUE. ) ) THEN
z2d(:,:) = 0._wp
CALL xios_recv_field( cdname, z2d)
ENDIF
#else
IF( .FALSE. ) WRITE(numout,*) cdname, z2d ! useless test to avoid compilation warnings
#endif
END SUBROUTINE iom_get_var
FUNCTION iom_getszuld ( kiomid )
!!-----------------------------------------------------------------------
!! *** FUNCTION iom_getszuld ***
!!
!! ** Purpose : get the size of the unlimited dimension in a file
!! (return -1 if not found)
!!-----------------------------------------------------------------------
INTEGER, INTENT(in ) :: kiomid ! file Identifier
!
INTEGER :: iom_getszuld
!!-----------------------------------------------------------------------
iom_getszuld = -1
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%iduld > 0 ) iom_getszuld = iom_file(kiomid)%lenuld
ENDIF
END FUNCTION iom_getszuld
!!----------------------------------------------------------------------
!! INTERFACE iom_chkatt
!!----------------------------------------------------------------------
SUBROUTINE iom_chkatt( kiomid, cdatt, llok, ksize, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
LOGICAL , INTENT( out) :: llok ! Error code
INTEGER , INTENT( out), OPTIONAL :: ksize ! Size of the attribute array
CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_chkatt( kiomid, cdatt, llok, ksize=ksize, cdvar=cdvar )
ENDIF
!
END SUBROUTINE iom_chkatt
!!----------------------------------------------------------------------
!! INTERFACE iom_getatt
!!----------------------------------------------------------------------
SUBROUTINE iom_g0d_iatt( kiomid, cdatt, katt0d, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
INTEGER , INTENT( out) :: katt0d ! read field
CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, katt0d = katt0d, cdvar=cdvar )
ENDIF
END SUBROUTINE iom_g0d_iatt
SUBROUTINE iom_g1d_iatt( kiomid, cdatt, katt1d, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
INTEGER, DIMENSION(:) , INTENT( out) :: katt1d ! read field
CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, katt1d = katt1d, cdvar=cdvar )
ENDIF
END SUBROUTINE iom_g1d_iatt
SUBROUTINE iom_g0d_ratt( kiomid, cdatt, patt0d, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
REAL(wp) , INTENT( out) :: patt0d ! read field
CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, patt0d = patt0d, cdvar=cdvar )
ENDIF
END SUBROUTINE iom_g0d_ratt
SUBROUTINE iom_g1d_ratt( kiomid, cdatt, patt1d, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
REAL(wp), DIMENSION(:), INTENT( out) :: patt1d ! read field
CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, patt1d = patt1d, cdvar=cdvar )
ENDIF
END SUBROUTINE iom_g1d_ratt
SUBROUTINE iom_g0d_catt( kiomid, cdatt, cdatt0d, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
CHARACTER(len=*) , INTENT( out) :: cdatt0d ! read field
CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, cdatt0d = cdatt0d, cdvar=cdvar )
ENDIF
END SUBROUTINE iom_g0d_catt
!!----------------------------------------------------------------------
!! INTERFACE iom_putatt
!!----------------------------------------------------------------------
SUBROUTINE iom_p0d_iatt( kiomid, cdatt, katt0d, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
INTEGER , INTENT(in ) :: katt0d ! written field
CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, katt0d = katt0d, cdvar=cdvar )
ENDIF
END SUBROUTINE iom_p0d_iatt
SUBROUTINE iom_p1d_iatt( kiomid, cdatt, katt1d, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
INTEGER, DIMENSION(:) , INTENT(in ) :: katt1d ! written field
CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, katt1d = katt1d, cdvar=cdvar )
ENDIF
END SUBROUTINE iom_p1d_iatt
SUBROUTINE iom_p0d_ratt( kiomid, cdatt, patt0d, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
REAL(wp) , INTENT(in ) :: patt0d ! written field
CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, patt0d = patt0d, cdvar=cdvar )
ENDIF
END SUBROUTINE iom_p0d_ratt
SUBROUTINE iom_p1d_ratt( kiomid, cdatt, patt1d, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
REAL(wp), DIMENSION(:), INTENT(in ) :: patt1d ! written field
CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, patt1d = patt1d, cdvar=cdvar )
ENDIF
END SUBROUTINE iom_p1d_ratt
SUBROUTINE iom_p0d_catt( kiomid, cdatt, cdatt0d, cdvar )
INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
CHARACTER(len=*) , INTENT(in ) :: cdatt0d ! written field
CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
!
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, cdatt0d = cdatt0d, cdvar=cdvar )
ENDIF
END SUBROUTINE iom_p0d_catt
!!----------------------------------------------------------------------
!! INTERFACE iom_rstput
!!----------------------------------------------------------------------
SUBROUTINE iom_rp0d_sp( kt, kwrite, kiomid, cdvar, pvar, ktype )
INTEGER , INTENT(in) :: kt ! ocean time-step
INTEGER , INTENT(in) :: kwrite ! writing time-step
INTEGER , INTENT(in) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
REAL(sp) , INTENT(in) :: pvar ! written field
INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
!
LOGICAL :: llx ! local xios write flag
INTEGER :: ivid ! variable id
CHARACTER(LEN=lc) :: context
!
CALL iom_rp0123d( kt, kwrite, kiomid, cdvar, ktype, pvsp0d = pvar )
!
END SUBROUTINE iom_rp0d_sp
SUBROUTINE iom_rp0d_dp( kt, kwrite, kiomid, cdvar, pvar, ktype )
INTEGER , INTENT(in) :: kt ! ocean time-step
INTEGER , INTENT(in) :: kwrite ! writing time-step
INTEGER , INTENT(in) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
REAL(dp) , INTENT(in) :: pvar ! written field
INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
!
LOGICAL :: llx ! local xios write flag
INTEGER :: ivid ! variable id
CHARACTER(LEN=lc) :: context
!
CALL iom_rp0123d( kt, kwrite, kiomid, cdvar, ktype, pvdp0d = pvar )
!
END SUBROUTINE iom_rp0d_dp
SUBROUTINE iom_rp1d_sp( kt, kwrite, kiomid, cdvar, pvar, ktype )
INTEGER , INTENT(in) :: kt ! ocean time-step
INTEGER , INTENT(in) :: kwrite ! writing time-step
INTEGER , INTENT(in) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
REAL(sp) , INTENT(in), DIMENSION( :) :: pvar ! written field
INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
!
LOGICAL :: llx ! local xios write flag
INTEGER :: ivid ! variable id
CHARACTER(LEN=lc) :: context
!
CALL iom_rp0123d( kt, kwrite, kiomid, cdvar, ktype, pvsp1d = pvar )
!
END SUBROUTINE iom_rp1d_sp
SUBROUTINE iom_rp1d_dp( kt, kwrite, kiomid, cdvar, pvar, ktype )
INTEGER , INTENT(in) :: kt ! ocean time-step
INTEGER , INTENT(in) :: kwrite ! writing time-step
INTEGER , INTENT(in) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
REAL(dp) , INTENT(in), DIMENSION( :) :: pvar ! written field
INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
!
LOGICAL :: llx ! local xios write flag
INTEGER :: ivid ! variable id
CHARACTER(LEN=lc) :: context
!
CALL iom_rp0123d( kt, kwrite, kiomid, cdvar, ktype, pvdp1d = pvar )
!
SUBROUTINE iom_rp2d_sp( kt, kwrite, kiomid, cdvar, pvar, ktype )
INTEGER , INTENT(in) :: kt ! ocean time-step
INTEGER , INTENT(in) :: kwrite ! writing time-step
INTEGER , INTENT(in) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
REAL(sp) , INTENT(in), DIMENSION(:, : ) :: pvar ! written field
INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
!
LOGICAL :: llx
INTEGER :: ivid ! variable id
CHARACTER(LEN=lc) :: context
!
CALL iom_rp0123d( kt, kwrite, kiomid, cdvar, ktype, pvsp2d = pvar )
!
END SUBROUTINE iom_rp2d_sp
SUBROUTINE iom_rp2d_dp( kt, kwrite, kiomid, cdvar, pvar, ktype )
INTEGER , INTENT(in) :: kt ! ocean time-step
INTEGER , INTENT(in) :: kwrite ! writing time-step
INTEGER , INTENT(in) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
REAL(dp) , INTENT(in), DIMENSION(:, : ) :: pvar ! written field
INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
!
LOGICAL :: llx
INTEGER :: ivid ! variable id
CHARACTER(LEN=lc) :: context
!
CALL iom_rp0123d( kt, kwrite, kiomid, cdvar, ktype, pvdp2d = pvar )
!
END SUBROUTINE iom_rp2d_dp
SUBROUTINE iom_rp3d_sp( kt, kwrite, kiomid, cdvar, pvar, ktype )
INTEGER , INTENT(in) :: kt ! ocean time-step
INTEGER , INTENT(in) :: kwrite ! writing time-step
INTEGER , INTENT(in) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
REAL(sp) , INTENT(in), DIMENSION(:,:,:) :: pvar ! written field
INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
!
LOGICAL :: llx ! local xios write flag
INTEGER :: ivid ! variable id
CHARACTER(LEN=lc) :: context
!
CALL iom_rp0123d( kt, kwrite, kiomid, cdvar, ktype, pvsp3d = pvar )
!
END SUBROUTINE iom_rp3d_sp
SUBROUTINE iom_rp3d_dp( kt, kwrite, kiomid, cdvar, pvar, ktype )
INTEGER , INTENT(in) :: kt ! ocean time-step
INTEGER , INTENT(in) :: kwrite ! writing time-step
INTEGER , INTENT(in) :: kiomid ! Identifier of the file
CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
REAL(dp) , INTENT(in), DIMENSION(:,:,:) :: pvar ! written field
INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
!
LOGICAL :: llx ! local xios write flag
INTEGER :: ivid ! variable id
CHARACTER(LEN=lc) :: context
!
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CALL iom_rp0123d( kt, kwrite, kiomid, cdvar, ktype, pvdp3d = pvar )
!
END SUBROUTINE iom_rp3d_dp
SUBROUTINE iom_rp0123d( kt, kwrite, kiomid, cdvar, ktype, pvsp0d, pvsp1d, pvsp2d, pvsp3d, pvdp0d, pvdp1d, pvdp2d, pvdp3d )
INTEGER , INTENT(in) :: kt ! ocean time-step
INTEGER , INTENT(in) :: kwrite ! writing time-step
INTEGER , INTENT(in) :: kiomid ! Identifier of the file
CHARACTER(len=*) , INTENT(in) :: cdvar ! time axis name
INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
REAL(sp) , INTENT(in), OPTIONAL :: pvsp0d ! read field (0D case), single precision
REAL(sp), DIMENSION(:) , INTENT(in), OPTIONAL :: pvsp1d ! read field (1D case), single precision
REAL(sp), DIMENSION(:,:) , INTENT(in), OPTIONAL :: pvsp2d ! read field (2D case), single precision
REAL(sp), DIMENSION(:,:,:) , INTENT(in), OPTIONAL :: pvsp3d ! read field (3D case), single precision
REAL(dp) , INTENT(in), OPTIONAL :: pvdp0d ! read field (0D case), double precision
REAL(dp), DIMENSION(:) , INTENT(in), OPTIONAL :: pvdp1d ! read field (1D case), double precision
REAL(dp), DIMENSION(:,:) , INTENT(in), OPTIONAL :: pvdp2d ! read field (2D case), double precision
REAL(dp), DIMENSION(:,:,:) , INTENT(in), OPTIONAL :: pvdp3d ! read field (3D case), double precision
!
LOGICAL :: llx ! local xios write flag
INTEGER :: ivid ! variable id
CHARACTER(LEN=lc) :: context
!
CALL set_xios_context(kiomid, context)
llx = .NOT. (context == "NONE")
IF( llx ) THEN
#ifdef key_xios
IF( kt == kwrite ) THEN
IF(lwp) write(numout,*) 'RESTART: write (XIOS) ',TRIM(cdvar)
IF( PRESENT(pvsp0d) ) CALL iom_put(TRIM(cdvar), pvsp0d)
IF( PRESENT(pvsp1d) ) CALL iom_put(TRIM(cdvar), pvsp1d)
IF( PRESENT(pvsp2d) ) CALL iom_put(TRIM(cdvar), pvsp2d)
IF( PRESENT(pvsp3d) ) CALL iom_put(TRIM(cdvar), pvsp3d)
IF( PRESENT(pvdp0d) ) CALL iom_put(TRIM(cdvar), pvdp0d)
IF( PRESENT(pvdp1d) ) CALL iom_put(TRIM(cdvar), pvdp1d)
IF( PRESENT(pvdp2d) ) CALL iom_put(TRIM(cdvar), pvdp2d)
IF( PRESENT(pvdp3d) ) CALL iom_put(TRIM(cdvar), pvdp3d)
IF(lwp) write(numout,*) 'RESTART: define (XIOS)',TRIM(cdvar)
CALL iom_set_rstw_active( TRIM(cdvar), rs0 = pvsp0d, rs1 = pvsp1d, rs2 = pvsp2d, rs3 = pvsp3d &
& , rd0 = pvdp0d, rd1 = pvdp1d, rd2 = pvdp2d, rd3 = pvdp3d )
CALL iom_swap(cxios_context)
ENDIF
#endif
ELSE
IF( kiomid > 0 ) THEN
IF( iom_file(kiomid)%nfid > 0 ) THEN
ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pvsp0d, pvsp1d, pvsp2d, pvsp3d, &
& pvdp0d, pvdp1d, pvdp2d, pvdp3d )
END SUBROUTINE iom_rp0123d
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SUBROUTINE iom_delay_rst( cdaction, cdcpnt, kncid )
!!---------------------------------------------------------------------
!! Routine iom_delay_rst: used read/write restart related to mpp_delay
!!
!!---------------------------------------------------------------------
CHARACTER(len=*), INTENT(in ) :: cdaction !
CHARACTER(len=*), INTENT(in ) :: cdcpnt
INTEGER , INTENT(in ) :: kncid
!
INTEGER :: ji
INTEGER :: indim
LOGICAL :: llattexist
REAL(wp), ALLOCATABLE, DIMENSION(:) :: zreal1d
!!---------------------------------------------------------------------
!
! ===================================
IF( TRIM(cdaction) == 'READ' ) THEN ! read restart related to mpp_delay !
! ===================================
DO ji = 1, nbdelay
IF ( c_delaycpnt(ji) == cdcpnt ) THEN
CALL iom_chkatt( kncid, 'DELAY_'//c_delaylist(ji), llattexist, indim )
IF( llattexist ) THEN
ALLOCATE( todelay(ji)%z1d(indim) )
CALL iom_getatt( kncid, 'DELAY_'//c_delaylist(ji), todelay(ji)%z1d(:) )
ndelayid(ji) = 0 ! set to 0 to specify that the value was read in the restart
ENDIF
ENDIF
END DO
! ====================================
ELSE ! write restart related to mpp_delay !
! ====================================
DO ji = 1, nbdelay ! save only ocean delayed global communication variables
IF ( c_delaycpnt(ji) == cdcpnt ) THEN
IF( ASSOCIATED(todelay(ji)%z1d) ) THEN
CALL mpp_delay_rcv(ji) ! make sure %z1d is received
CALL iom_putatt( kncid, 'DELAY_'//c_delaylist(ji), todelay(ji)%z1d(:) )
ENDIF
ENDIF
END DO
!
ENDIF
END SUBROUTINE iom_delay_rst
!!----------------------------------------------------------------------
!! INTERFACE iom_put
!!----------------------------------------------------------------------
SUBROUTINE iom_p0d_sp( cdname, pfield0d )
CHARACTER(LEN=*), INTENT(in) :: cdname
REAL(sp) , INTENT(in) :: pfield0d
!! REAL(wp) , DIMENSION(jpi,jpj) :: zz ! masson
#if defined key_xios
!!clem zz(:,:)=pfield0d
!!clem CALL xios_send_field(cdname, zz)
CALL xios_send_field(cdname, (/pfield0d/))
#else
IF( .FALSE. ) WRITE(numout,*) cdname, pfield0d ! useless test to avoid compilation warnings
#endif
END SUBROUTINE iom_p0d_sp
SUBROUTINE iom_p0d_dp( cdname, pfield0d )
CHARACTER(LEN=*), INTENT(in) :: cdname
REAL(dp) , INTENT(in) :: pfield0d
!! REAL(wp) , DIMENSION(jpi,jpj) :: zz ! masson
#if defined key_xios
!!clem zz(:,:)=pfield0d
!!clem CALL xios_send_field(cdname, zz)
CALL xios_send_field(cdname, (/pfield0d/))
#else
IF( .FALSE. ) WRITE(numout,*) cdname, pfield0d ! useless test to avoid compilation warnings
#endif
END SUBROUTINE iom_p0d_dp
SUBROUTINE iom_p1d_sp( cdname, pfield1d )
CHARACTER(LEN=*) , INTENT(in) :: cdname
REAL(sp), DIMENSION(:), INTENT(in) :: pfield1d
#if defined key_xios
CALL xios_send_field( cdname, RESHAPE( (/pfield1d/), (/1,1,SIZE(pfield1d)/) ) )
#else
IF( .FALSE. ) WRITE(numout,*) cdname, pfield1d ! useless test to avoid compilation warnings
#endif
END SUBROUTINE iom_p1d_sp
SUBROUTINE iom_p1d_dp( cdname, pfield1d )
CHARACTER(LEN=*) , INTENT(in) :: cdname
REAL(dp), DIMENSION(:), INTENT(in) :: pfield1d
#if defined key_xios
CALL xios_send_field( cdname, RESHAPE( (/pfield1d/), (/1,1,SIZE(pfield1d)/) ) )
#else
IF( .FALSE. ) WRITE(numout,*) cdname, pfield1d ! useless test to avoid compilation warnings
#endif
END SUBROUTINE iom_p1d_dp
SUBROUTINE iom_p2d_sp( cdname, pfield2d )
CHARACTER(LEN=*) , INTENT(in) :: cdname
REAL(sp), DIMENSION(:,:), INTENT(in) :: pfield2d
IF( iom_use(cdname) ) THEN
#if defined key_xios
IF( is_tile(pfield2d) == 1 ) THEN
ELSE IF( .NOT. l_istiled .OR. ntile == nijtile ) THEN
CALL xios_send_field( cdname, pfield2d )
ENDIF
#else
WRITE(numout,*) pfield2d ! iom_use(cdname) = .F. -> useless test to avoid compilation warnings
#endif
ENDIF
END SUBROUTINE iom_p2d_sp
SUBROUTINE iom_p2d_dp( cdname, pfield2d )
CHARACTER(LEN=*) , INTENT(in) :: cdname
REAL(dp), DIMENSION(:,:), INTENT(in) :: pfield2d
IF( iom_use(cdname) ) THEN
#if defined key_xios
IF( is_tile(pfield2d) == 1 ) THEN
ELSE IF( .NOT. l_istiled .OR. ntile == nijtile ) THEN
CALL xios_send_field( cdname, pfield2d )
ENDIF
#else
WRITE(numout,*) pfield2d ! iom_use(cdname) = .F. -> useless test to avoid compilation warnings
#endif
ENDIF
END SUBROUTINE iom_p2d_dp
SUBROUTINE iom_p3d_sp( cdname, pfield3d )
CHARACTER(LEN=*) , INTENT(in) :: cdname
REAL(sp), DIMENSION(:,:,:), INTENT(in) :: pfield3d
IF( iom_use(cdname) ) THEN
#if defined key_xios
IF( is_tile(pfield3d) == 1 ) THEN
ELSE IF( .NOT. l_istiled .OR. ntile == nijtile ) THEN
CALL xios_send_field( cdname, pfield3d )
ENDIF
#else
WRITE(numout,*) pfield3d ! iom_use(cdname) = .F. -> useless test to avoid compilation warnings
#endif
ENDIF
END SUBROUTINE iom_p3d_sp
SUBROUTINE iom_p3d_dp( cdname, pfield3d )
CHARACTER(LEN=*) , INTENT(in) :: cdname
REAL(dp), DIMENSION(:,:,:), INTENT(in) :: pfield3d
IF( iom_use(cdname) ) THEN
#if defined key_xios
IF( is_tile(pfield3d) == 1 ) THEN
ELSE IF( .NOT. l_istiled .OR. ntile == nijtile ) THEN
CALL xios_send_field( cdname, pfield3d )
ENDIF
#else
WRITE(numout,*) pfield3d ! iom_use(cdname) = .F. -> useless test to avoid compilation warnings
#endif
ENDIF
END SUBROUTINE iom_p3d_dp
SUBROUTINE iom_p4d_sp( cdname, pfield4d )
CHARACTER(LEN=*) , INTENT(in) :: cdname
REAL(sp), DIMENSION(:,:,:,:), INTENT(in) :: pfield4d
IF( iom_use(cdname) ) THEN
#if defined key_xios
IF( is_tile(pfield4d) == 1 ) THEN
ELSE IF( .NOT. l_istiled .OR. ntile == nijtile ) THEN
CALL xios_send_field( cdname, pfield4d )
ENDIF
#else
WRITE(numout,*) pfield4d ! iom_use(cdname) = .F. -> useless test to avoid compilation warnings
#endif
ENDIF
END SUBROUTINE iom_p4d_sp
SUBROUTINE iom_p4d_dp( cdname, pfield4d )
CHARACTER(LEN=*) , INTENT(in) :: cdname
REAL(dp), DIMENSION(:,:,:,:), INTENT(in) :: pfield4d
IF( iom_use(cdname) ) THEN
#if defined key_xios
IF( is_tile(pfield4d) == 1 ) THEN
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ELSE IF( .NOT. l_istiled .OR. ntile == nijtile ) THEN
CALL xios_send_field( cdname, pfield4d )
ENDIF
#else
WRITE(numout,*) pfield4d ! iom_use(cdname) = .F. -> useless test to avoid compilation warnings
#endif
ENDIF
END SUBROUTINE iom_p4d_dp
#if defined key_xios
!!----------------------------------------------------------------------
!! 'key_xios' XIOS interface
!!----------------------------------------------------------------------
SUBROUTINE iom_set_domain_attr( cdid, ni_glo, nj_glo, ibegin, jbegin, ni, nj, &
& data_dim, data_ibegin, data_ni, data_jbegin, data_nj, lonvalue, latvalue, mask, &
& ntiles, tile_ibegin, tile_jbegin, tile_ni, tile_nj, &
& tile_data_ibegin, tile_data_jbegin, tile_data_ni, tile_data_nj, &
& nvertex, bounds_lon, bounds_lat, area )
!!----------------------------------------------------------------------
!!----------------------------------------------------------------------
CHARACTER(LEN=*) , INTENT(in) :: cdid
INTEGER , OPTIONAL, INTENT(in) :: ni_glo, nj_glo, ibegin, jbegin, ni, nj
INTEGER, DIMENSION(:) , OPTIONAL, INTENT(in) :: tile_ibegin, tile_jbegin, tile_ni, tile_nj
INTEGER, DIMENSION(:) , OPTIONAL, INTENT(in) :: tile_data_ibegin, tile_data_jbegin, tile_data_ni, tile_data_nj
INTEGER , OPTIONAL, INTENT(in) :: data_dim, data_ibegin, data_ni, data_jbegin, data_nj
INTEGER , OPTIONAL, INTENT(in) :: nvertex, ntiles
REAL(dp), DIMENSION(:) , OPTIONAL, INTENT(in) :: lonvalue, latvalue
REAL(dp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds_lon, bounds_lat, area
LOGICAL , DIMENSION(:) , OPTIONAL, INTENT(in) :: mask
!!----------------------------------------------------------------------
!
IF( xios_is_valid_domain (cdid) ) THEN
CALL xios_set_domain_attr ( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
& ntiles=ntiles, tile_ibegin=tile_ibegin, tile_jbegin=tile_jbegin, tile_ni=tile_ni, tile_nj=tile_nj, &
& tile_data_ibegin=tile_data_ibegin, tile_data_jbegin=tile_data_jbegin, &
& tile_data_ni=tile_data_ni, tile_data_nj=tile_data_nj, &
& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
& bounds_lat_1D=bounds_lat, area=area, type='curvilinear')
ENDIF
IF( xios_is_valid_domaingroup(cdid) ) THEN
CALL xios_set_domaingroup_attr( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
& ntiles=ntiles, tile_ibegin=tile_ibegin, tile_jbegin=tile_jbegin, tile_ni=tile_ni, tile_nj=tile_nj, &
& tile_data_ibegin=tile_data_ibegin, tile_data_jbegin=tile_data_jbegin, &
& tile_data_ni=tile_data_ni, tile_data_nj=tile_data_nj, &
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& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
& bounds_lat_1D=bounds_lat, area=area, type='curvilinear' )
ENDIF
!
CALL xios_solve_inheritance()
!
END SUBROUTINE iom_set_domain_attr
SUBROUTINE iom_set_zoom_domain_attr( cdid, ibegin, jbegin, ni, nj )
!!----------------------------------------------------------------------
!!----------------------------------------------------------------------
CHARACTER(LEN=*), INTENT(in) :: cdid
INTEGER , INTENT(in) :: ibegin, jbegin, ni, nj
!
TYPE(xios_gridgroup) :: gridgroup_hdl
TYPE(xios_grid) :: grid_hdl
TYPE(xios_domain) :: domain_hdl
TYPE(xios_axis) :: axis_hdl
CHARACTER(LEN=64) :: cldomrefid ! domain_ref name
CHARACTER(len=1) :: cl1 ! last character of this name
!!----------------------------------------------------------------------
!
IF( xios_is_valid_zoom_domain(cdid) ) THEN
! define the zoom_domain attributs
CALL xios_set_zoom_domain_attr( cdid, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj )
! define a new 2D grid with this new domain
CALL xios_get_handle("grid_definition", gridgroup_hdl )
CALL xios_add_child(gridgroup_hdl, grid_hdl, TRIM(cdid)//'_2D' ) ! add a new 2D grid to grid_definition
CALL xios_add_child(grid_hdl, domain_hdl, TRIM(cdid) ) ! add its domain
! define a new 3D grid with this new domain
CALL xios_add_child(gridgroup_hdl, grid_hdl, TRIM(cdid)//'_3D' ) ! add a new 3D grid to grid_definition
CALL xios_add_child(grid_hdl, domain_hdl, TRIM(cdid) ) ! add its domain
! vertical axis
cl1 = cdid(LEN_TRIM(cdid):) ! last letter of cdid
cl1 = CHAR(ICHAR(cl1)+32) ! from upper to lower case
CALL xios_add_child(grid_hdl, axis_hdl, 'depth'//cl1) ! add its axis
ENDIF
!
END SUBROUTINE iom_set_zoom_domain_attr
SUBROUTINE iom_set_axis_attr( cdid, paxis, bounds )
!!----------------------------------------------------------------------
!!----------------------------------------------------------------------
CHARACTER(LEN=*) , INTENT(in) :: cdid
REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: paxis
REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds
!!----------------------------------------------------------------------
IF( PRESENT(paxis) ) THEN
IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, n_glo=SIZE(paxis), value=real(paxis, dp) )
IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, n_glo=SIZE(paxis), value=real(paxis, dp) )
ENDIF
IF( PRESENT(bounds) ) THEN
IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, bounds=real(bounds, dp) )
IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, bounds=real(bounds, dp) )
ELSE
IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid)
IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid)
END IF
CALL xios_solve_inheritance()
END SUBROUTINE iom_set_axis_attr
SUBROUTINE iom_set_field_attr( cdid, freq_op, freq_offset )
!!----------------------------------------------------------------------
!!----------------------------------------------------------------------
CHARACTER(LEN=*) , INTENT(in) :: cdid
TYPE(xios_duration), OPTIONAL, INTENT(in) :: freq_op
TYPE(xios_duration), OPTIONAL, INTENT(in) :: freq_offset
!!----------------------------------------------------------------------
IF( xios_is_valid_field (cdid) ) CALL xios_set_field_attr ( cdid, freq_op=freq_op, freq_offset=freq_offset )
IF( xios_is_valid_fieldgroup(cdid) ) CALL xios_set_fieldgroup_attr( cdid, freq_op=freq_op, freq_offset=freq_offset )
CALL xios_solve_inheritance()
END SUBROUTINE iom_set_field_attr
SUBROUTINE iom_set_file_attr( cdid, name, name_suffix )
!!----------------------------------------------------------------------
!!----------------------------------------------------------------------
CHARACTER(LEN=*) , INTENT(in) :: cdid
CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: name, name_suffix
!!----------------------------------------------------------------------
IF( xios_is_valid_file (cdid) ) CALL xios_set_file_attr ( cdid, name=name, name_suffix=name_suffix )
IF( xios_is_valid_filegroup(cdid) ) CALL xios_set_filegroup_attr( cdid, name=name, name_suffix=name_suffix )
CALL xios_solve_inheritance()
END SUBROUTINE iom_set_file_attr
SUBROUTINE iom_get_file_attr( cdid, name, name_suffix, output_freq )
!!----------------------------------------------------------------------
!!----------------------------------------------------------------------
CHARACTER(LEN=*) , INTENT(in ) :: cdid
CHARACTER(LEN=*),OPTIONAL , INTENT(out) :: name, name_suffix
TYPE(xios_duration), OPTIONAL , INTENT(out) :: output_freq
LOGICAL :: llexist1,llexist2,llexist3
!---------------------------------------------------------------------
IF( PRESENT( name ) ) name = '' ! default values
IF( PRESENT( name_suffix ) ) name_suffix = ''
IF( PRESENT( output_freq ) ) output_freq = xios_duration(0,0,0,0,0,0)
IF( xios_is_valid_file (cdid) ) THEN
CALL xios_solve_inheritance()
CALL xios_is_defined_file_attr ( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
IF(llexist1) CALL xios_get_file_attr ( cdid, name = name )
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