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MODULE nemogcm
!!======================================================================
!! *** MODULE nemogcm ***
!! StandAlone Surface module : surface fluxes + sea-ice + iceberg floats + ABL
!!======================================================================
!! History : 3.6 ! 2011-11 (S. Alderson, G. Madec) original code
!! - ! 2013-06 (I. Epicoco, S. Mocavero, CMCC) nemo_northcomms: setup avoiding MPI communication
!! - ! 2014-12 (G. Madec) remove KPP scheme and cross-land advection (cla)
!! 4.0 ! 2016-10 (G. Madec, S. Flavoni) domain configuration / user defined interface
!!----------------------------------------------------------------------
!!----------------------------------------------------------------------
!! nemo_gcm : solve ocean dynamics, tracer, biogeochemistry and/or sea-ice
!! nemo_init : initialization of the NEMO system
!! nemo_ctl : initialisation of the contol print
!! nemo_closefile: close remaining open files
!! nemo_alloc : dynamical allocation
!!----------------------------------------------------------------------
USE step_oce ! module used in the ocean time stepping module
USE sbc_oce ! surface boundary condition: ocean
USE phycst ! physical constant (par_cst routine)
USE domain ! domain initialization (dom_init & dom_cfg routines)
USE closea ! treatment of closed seas (for ln_closea)
USE usrdef_nam ! user defined configuration
USE daymod ! calendar
USE restart ! open restart file
USE step ! NEMO time-stepping (stp routine)
USE cpl_oasis3 !
USE sbcssm !
USE icbini ! handle bergs, initialisation
USE icbstp ! handle bergs, calving, themodynamics and transport
USE bdyini ! open boundary cond. setting (bdy_init routine). mandatory for sea-ice
USE bdydta ! open boundary cond. setting (bdy_dta_init routine). mandatory for sea-ice
USE diu_layers ! diurnal bulk SST and coolskin
USE step_diu ! diurnal bulk SST timestepping (called from here if run offline)
USE icb_oce ! icebergs
!
USE prtctl ! Print control
USE in_out_manager ! I/O manager
USE lib_mpp ! distributed memory computing
USE mppini ! shared/distributed memory setting (mpp_init routine)
USE lib_fortran ! Fortran utilities (allows no signed zero when 'key_nosignedzero' defined)
#if defined key_xios
USE xios ! xIOserver
#endif
#if defined key_agrif && defined key_si3
USE agrif_ice_update ! ice update
#endif
USE halo_mng
IMPLICIT NONE
PRIVATE
PUBLIC nemo_gcm ! called by model.F90
PUBLIC nemo_init ! needed by AGRIF
CHARACTER(lc) :: cform_aaa="( /, 'AAAAAAAA', / ) " ! flag for output listing
#if ! defined key_mpi_off
! need MPI_Wtime
INCLUDE 'mpif.h'
#endif
!!----------------------------------------------------------------------
!! NEMO/SAS 4.0 , NEMO Consortium (2018)
!! $Id: nemogcm.F90 15267 2021-09-17 09:04:34Z smasson $
!! Software governed by the CeCILL license (see ./LICENSE)
!!----------------------------------------------------------------------
CONTAINS
SUBROUTINE nemo_gcm
!!----------------------------------------------------------------------
!! *** ROUTINE nemo_gcm ***
!!
!! ** Purpose : NEMO solves the primitive equations on an orthogonal
!! curvilinear mesh on the sphere.
!!
!! ** Method : - model general initialization
!! - launch the time-stepping (stp routine)
!! - finalize the run by closing files and communications
!!
!! References : Madec, Delecluse, Imbard, and Levy, 1997: internal report, IPSL.
!! Madec, 2008, internal report, IPSL.
!!----------------------------------------------------------------------
INTEGER :: istp ! time step index
REAL(wp):: zstptiming ! elapsed time for 1 time step
!!----------------------------------------------------------------------
!
#if defined key_agrif
CALL Agrif_Init_Grids() ! AGRIF: set the meshes
#endif
! !-----------------------!
CALL nemo_init !== Initialisations ==!
! !-----------------------!
#if defined key_agrif
Kbb_a = Nbb; Kmm_a = Nnn; Krhs_a = Nrhs ! agrif_oce module copies of time level indices
CALL Agrif_Declare_Var ! " " " " " DYN/TRA
# if defined key_top
CALL Agrif_Declare_Var_top ! " " " " " TOP
# endif
#endif
! check that all process are still there... If some process have an error,
! they will never enter in step and other processes will wait until the end of the cpu time!
CALL mpp_max( 'nemogcm', nstop )
IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA
! !-----------------------!
! !== time stepping ==!
! !-----------------------!
!
! !== set the model time-step ==!
!
istp = nit000
!
#if defined key_agrif
! !== AGRIF time-stepping ==!
CALL Agrif_Regrid()
!
#if defined key_si3
! Recursive update from highest nested level to lowest:
Kbb_a = Nbb; Kmm_a = Nnn; Krhs_a = Nrhs ! agrif_oce module copies of time level indices
CALL Agrif_step_child_adj(Agrif_update_ice)
#endif
!
DO WHILE( istp <= nitend .AND. nstop == 0 )
CALL stp
istp = istp + 1
END DO
!
# else
!
IF( .NOT.ln_diurnal_only ) THEN !== Standard time-stepping ==!
!
DO WHILE( istp <= nitend .AND. nstop == 0 )
ncom_stp = istp
IF( ln_timing ) THEN
zstptiming = MPI_Wtime()
IF ( istp == ( nit000 + 1 ) ) elapsed_time = zstptiming
IF ( istp == nitend ) elapsed_time = zstptiming - elapsed_time
ENDIF
CALL stp ( istp )
istp = istp + 1
IF( lwp .AND. ln_timing ) WRITE(numtime,*) 'timing step ', istp-1, ' : ', MPI_Wtime() - zstptiming
END DO
!
ELSE !== diurnal SST time-steeping only ==!
!
DO WHILE( istp <= nitend .AND. nstop == 0 )
CALL stp_diurnal( istp ) ! time step only the diurnal SST
istp = istp + 1
END DO
!
ENDIF
!
#endif
!
IF( ln_icebergs ) CALL icb_end( nitend )
! !------------------------!
! !== finalize the run ==!
! !------------------------!
IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA
!
IF( nstop /= 0 .AND. lwp ) THEN ! error print
WRITE(ctmp1,*) ' ==>>> nemo_gcm: a total of ', nstop, ' errors have been found'
IF( ngrdstop > 0 ) THEN
WRITE(ctmp9,'(i2)') ngrdstop
WRITE(ctmp2,*) ' E R R O R detected in Agrif grid '//TRIM(ctmp9)
WRITE(ctmp3,*) ' Look for "E R R O R" messages in all existing '//TRIM(ctmp9)//'_ocean_output* files'
CALL ctl_stop( ' ', ctmp1, ' ', ctmp2, ' ', ctmp3 )
ELSE
WRITE(ctmp2,*) ' Look for "E R R O R" messages in all existing ocean_output* files'
CALL ctl_stop( ' ', ctmp1, ' ', ctmp2 )
ENDIF
ENDIF
!
IF( ln_timing ) CALL timing_finalize
!
CALL nemo_closefile
!
#if defined key_xios
CALL xios_finalize ! end mpp communications with xios
IF( lk_oasis ) CALL cpl_finalize ! end coupling and mpp communications with OASIS
#else
IF ( lk_oasis ) THEN ; CALL cpl_finalize ! end coupling and mpp communications with OASIS
ELSEIF( lk_mpp ) THEN ; CALL mppstop ! end mpp communications
ENDIF
#endif
!
IF(lwm) THEN
IF( nstop == 0 ) THEN ; STOP 0
ELSE ; STOP 123
ENDIF
ENDIF
!
END SUBROUTINE nemo_gcm
SUBROUTINE nemo_init
!!----------------------------------------------------------------------
!! *** ROUTINE nemo_init ***
!!
!! ** Purpose : initialization of the NEMO GCM
!!----------------------------------------------------------------------
INTEGER :: ios, ilocal_comm ! local integers
!!
NAMELIST/namctl/ sn_cfctl, ln_timing, ln_diacfl, &
& nn_isplt, nn_jsplt, nn_ictls, nn_ictle, nn_jctls, nn_jctle
NAMELIST/namcfg/ ln_read_cfg, cn_domcfg, ln_closea, ln_write_cfg, cn_domcfg_out, ln_use_jattr
!!----------------------------------------------------------------------
!
IF( lk_oasis ) THEN ; cxios_context = 'sas' ! when coupling SAS to OCE
ELSE ; cxios_context = 'nemo' !
ENDIF
nn_hls = 1
!
l_SAS = .TRUE. ! used in domain:dom_nam
!
! !-------------------------------------------------!
! ! set communicator & select the local rank !
! ! must be done as soon as possible to get narea !
! !-------------------------------------------------!
!
#if defined key_xios
IF( Agrif_Root() ) THEN
IF( lk_oasis ) THEN
CALL cpl_init( "sas", ilocal_comm ) ! nemo local communicator given by oasis
CALL xios_initialize( "not used",local_comm=ilocal_comm ) ! send nemo communicator to xios
ELSE
CALL xios_initialize( "for_xios_mpi_id",return_comm=ilocal_comm ) ! nemo local communicator given by xios
ENDIF
ENDIF
CALL mpp_start( ilocal_comm )
#else
IF( lk_oasis ) THEN
IF( Agrif_Root() ) THEN
CALL cpl_init( "sas", ilocal_comm ) ! nemo local communicator given by oasis
ENDIF
CALL mpp_start( ilocal_comm )
ELSE
CALL mpp_start( )
ENDIF
#endif
!
narea = mpprank + 1 ! mpprank: the rank of proc (0 --> mppsize -1 )
lwm = (narea == 1) ! control of output namelists
!
! !---------------------------------------------------------------!
! ! Open output files, reference and configuration namelist files !
! !---------------------------------------------------------------!
!
! open ocean.output as soon as possible to get all output prints (including errors messages)
IF( lk_oasis ) THEN
IF( lwm ) CALL ctl_opn( numout, 'sas.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. )
! open reference and configuration namelist files
CALL load_nml( numnam_ref, 'namelist_sas_ref', -1, lwm )
CALL load_nml( numnam_cfg, 'namelist_sas_cfg', -1, lwm )
IF( lwm ) CALL ctl_opn( numond, 'output.namelist_sas.dyn', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. )
ELSE
IF( lwm ) CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. )
! open reference and configuration namelist files
CALL load_nml( numnam_ref, 'namelist_ref', -1, lwm )
CALL load_nml( numnam_cfg, 'namelist_cfg', -1, lwm )
IF( lwm ) CALL ctl_opn( numond, 'output.namelist.dyn', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. )
ENDIF
! open /dev/null file to be able to supress output write easily
IF( Agrif_Root() ) THEN
CALL ctl_opn( numnul, '/dev/null', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. )
#ifdef key_agrif
ELSE
numnul = Agrif_Parent(numnul)
#endif
ENDIF
!
! !--------------------!
! ! Open listing units ! -> need sn_cfctl from namctl to define lwp
! !--------------------!
!
READ ( numnam_ref, namctl, IOSTAT = ios, ERR = 901 )
901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namctl in reference namelist' )
READ ( numnam_cfg, namctl, IOSTAT = ios, ERR = 902 )
902 IF( ios > 0 ) CALL ctl_nam ( ios , 'namctl in configuration namelist' )
!
! finalize the definition of namctl variables
IF( narea < sn_cfctl%procmin .OR. narea > sn_cfctl%procmax .OR. MOD( narea - sn_cfctl%procmin, sn_cfctl%procincr ) /= 0 ) &
& CALL nemo_set_cfctl( sn_cfctl, .FALSE. )
!
lwp = (narea == 1) .OR. sn_cfctl%l_oceout ! control of all listing output print
!
IF(lwp) THEN ! open listing units
!
IF( .NOT. lwm ) THEN ! alreay opened for narea == 1
IF(lk_oasis) THEN ; CALL ctl_opn( numout, 'sas.output','REPLACE','FORMATTED','SEQUENTIAL',-1,-1, .FALSE., narea )
ELSE ; CALL ctl_opn( numout, 'ocean.output','REPLACE','FORMATTED','SEQUENTIAL',-1,-1, .FALSE., narea )
ENDIF
ENDIF
!
WRITE(numout,*)
WRITE(numout,*) ' CNRS - NERC - Met OFFICE - MERCATOR-ocean - CMCC'
WRITE(numout,*) ' NEMO team'
WRITE(numout,*) ' Ocean General Circulation Model'
WRITE(numout,*) ' NEMO version 4.0 (2019) '
WRITE(numout,*) ' StandAlone Surface version (SAS) '
WRITE(numout,*) " ._ ._ ._ ._ ._ "
WRITE(numout,*) " _.-._)`\_.-._)`\_.-._)`\_.-._)`\_.-._)`\_ "
WRITE(numout,*)
WRITE(numout,*) " o _, _, "
WRITE(numout,*) " o .' ( .-' / "
WRITE(numout,*) " o _/..._'. .' / "
WRITE(numout,*) " ( o .-'` ` '-./ _.' "
WRITE(numout,*) " ) ( o) ;= <_ ( "
WRITE(numout,*) " ( '-.,\\__ __.-;`\ '. ) "
WRITE(numout,*) " ) ) \) |`\ \) '. \ ( ( "
WRITE(numout,*) " ( ( \_/ '-._\ ) ) "
WRITE(numout,*) " ) ) jgs ` ( ( "
WRITE(numout,*) " ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ "
WRITE(numout,*)
WRITE(numout,*)
!
WRITE(numout,cform_aaa) ! Flag AAAAAAA
!
ENDIF
!
IF(lwm) WRITE( numond, namctl )
!
! !------------------------------------!
! ! Set global domain size parameters !
! !------------------------------------!
!
READ ( numnam_ref, namcfg, IOSTAT = ios, ERR = 903 )
903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namcfg in reference namelist' )
READ ( numnam_cfg, namcfg, IOSTAT = ios, ERR = 904 )
904 IF( ios > 0 ) CALL ctl_nam ( ios , 'namcfg in configuration namelist' )
!
IF( ln_read_cfg ) THEN ! Read sizes in domain configuration file
CALL domain_cfg ( cn_cfg, nn_cfg, Ni0glo, Nj0glo, jpkglo, l_Iperio, l_Jperio, l_NFold, c_NFtype )
ELSE ! user-defined namelist
CALL usr_def_nam( cn_cfg, nn_cfg, Ni0glo, Nj0glo, jpkglo, l_Iperio, l_Jperio, l_NFold, c_NFtype )
ENDIF
!
IF(lwm) WRITE( numond, namcfg )
!
! !-----------------------------------------!
! ! mpp parameters and domain decomposition !
! !-----------------------------------------!
CALL mpp_init
#if defined key_loop_fusion
IF( nn_hls == 1 ) THEN
CALL ctl_stop( 'STOP', 'nemogcm : Loop fusion can be used only with extra-halo' )
ENDIF
Sebastien Masson
committed
CALL ctl_warn( 'nemo_init', 'you use key_loop_fusion, this may significantly slow down NEMO performances' )
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#endif
CALL halo_mng_init()
! Now we know the dimensions of the grid and numout has been set: we can allocate arrays
CALL nemo_alloc()
! Initialise time level indices
Nbb = 1; Nnn = 2; Naa = 3; Nrhs = Naa
#if defined key_agrif
Kbb_a = Nbb; Kmm_a = Nnn; Krhs_a = Nrhs ! agrif_oce module copies of time level indices
#endif
! !-------------------------------!
! ! NEMO general initialization !
! !-------------------------------!
CALL nemo_ctl ! Control prints
!
! ! General initialization
IF( ln_timing ) CALL timing_init ( 'timing_sas.output' )
IF( ln_timing ) CALL timing_start( 'nemo_init')
CALL phy_cst ! Physical constants
CALL eos_init ! Equation of seawater
#if defined key_agrif
CALL Agrif_Declare_Var_ini ! " " " " " DOM
#endif
CALL dom_init( Nbb, Nnn, Naa ) ! Domain
IF( sn_cfctl%l_prtctl ) &
& CALL prt_ctl_init ! Print control
IF( ln_rstart ) CALL rst_read_open
CALL day_init ! model calendar (using both namelist and restart infos)
#if defined key_agrif
uu(:,:,:,:) = 0.0_wp ; vv(:,:,:,:) = 0.0_wp ; ts(:,:,:,:,:) = 0.0_wp ! needed for interp done at initialization phase
uu_b(:,:,:) = 0.0_wp ; vv_b(:,:,:) = 0.0_wp
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#endif
! ! external forcing
CALL sbc_init( Nbb, Nnn, Naa ) ! Forcings : surface module
! ==> clem: open boundaries init. is mandatory for sea-ice because ice BDY is not decoupled from
! the environment of ocean BDY. Therefore bdy is called in both OCE and SAS modules.
! This is not clean and should be changed in the future.
CALL bdy_init
! ==>
CALL icb_init( rn_Dt, nit000) ! initialise icebergs instance
! compatibility check
IF( ln_icebergs .AND. ln_M2016 ) THEN
IF( lwp ) WRITE(numout,*) ' ==>>> ln_iceberg and ln_M2016 not compatible with SAS (need 3d data)'
CALL ctl_stop('ln_iceberg and ln_M2016 not compatible with SAS (need 3d data)')
END IF
!
IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA
!
IF( ln_timing ) CALL timing_stop( 'nemo_init')
!
END SUBROUTINE nemo_init
SUBROUTINE nemo_ctl
!!----------------------------------------------------------------------
!! *** ROUTINE nemo_ctl ***
!!
!! ** Purpose : control print setting
!!
!! ** Method : - print namctl and namcfg information and check some consistencies
!!----------------------------------------------------------------------
!
IF(lwp) THEN ! control print
WRITE(numout,*)
WRITE(numout,*) 'nemo_ctl: Control prints'
WRITE(numout,*) '~~~~~~~~'
WRITE(numout,*) ' Namelist namctl'
WRITE(numout,*) ' sn_cfctl%l_runstat = ', sn_cfctl%l_runstat
WRITE(numout,*) ' sn_cfctl%l_trcstat = ', sn_cfctl%l_trcstat
WRITE(numout,*) ' sn_cfctl%l_oceout = ', sn_cfctl%l_oceout
WRITE(numout,*) ' sn_cfctl%l_layout = ', sn_cfctl%l_layout
WRITE(numout,*) ' sn_cfctl%l_prtctl = ', sn_cfctl%l_prtctl
WRITE(numout,*) ' sn_cfctl%l_prttrc = ', sn_cfctl%l_prttrc
WRITE(numout,*) ' sn_cfctl%l_oasout = ', sn_cfctl%l_oasout
WRITE(numout,*) ' sn_cfctl%procmin = ', sn_cfctl%procmin
WRITE(numout,*) ' sn_cfctl%procmax = ', sn_cfctl%procmax
WRITE(numout,*) ' sn_cfctl%procincr = ', sn_cfctl%procincr
WRITE(numout,*) ' sn_cfctl%ptimincr = ', sn_cfctl%ptimincr
WRITE(numout,*) ' timing by routine ln_timing = ', ln_timing
WRITE(numout,*) ' CFL diagnostics ln_diacfl = ', ln_diacfl
ENDIF
!
IF( .NOT.ln_read_cfg ) ln_closea = .FALSE. ! dealing possible only with a domcfg file
IF(lwp) THEN ! control print
WRITE(numout,*)
WRITE(numout,*) ' Namelist namcfg'
WRITE(numout,*) ' read domain configuration file ln_read_cfg = ', ln_read_cfg
WRITE(numout,*) ' filename to be read cn_domcfg = ', TRIM(cn_domcfg)
WRITE(numout,*) ' keep closed seas in the domain (if exist) ln_closea = ', ln_closea
WRITE(numout,*) ' create a configuration definition file ln_write_cfg = ', ln_write_cfg
WRITE(numout,*) ' filename to be written cn_domcfg_out = ', TRIM(cn_domcfg_out)
WRITE(numout,*) ' use file attribute if exists as i/p j-start ln_use_jattr = ', ln_use_jattr
ENDIF
!
IF( 1._wp /= SIGN(1._wp,-0._wp) ) CALL ctl_stop( 'nemo_ctl: The intrinsec SIGN function follows f2003 standard.', &
& 'Compile with key_nosignedzero enabled:', &
& '--> add -Dkey_nosignedzero to the definition of %CPP in your arch file' )
!
#if defined key_agrif
IF( ln_timing ) CALL ctl_stop( 'AGRIF not implemented with ln_timing = true')
#endif
!
END SUBROUTINE nemo_ctl
SUBROUTINE nemo_closefile
!!----------------------------------------------------------------------
!! *** ROUTINE nemo_closefile ***
!!
!! ** Purpose : Close the files
!!----------------------------------------------------------------------
!
IF( lk_mpp ) CALL mppsync
!
CALL iom_close ! close all input/output files managed by iom_*
!
IF( numstp /= -1 ) CLOSE( numstp ) ! time-step file
IF( numrun /= -1 ) CLOSE( numrun ) ! run statistics file
IF( lwm.AND.numond /= -1 ) CLOSE( numond ) ! oce output namelist
IF( lwm.AND.numoni /= -1 ) CLOSE( numoni ) ! ice output namelist
IF( numevo_ice /= -1 ) CLOSE( numevo_ice ) ! ice variables (temp. evolution)
IF( numout /= 6 ) CLOSE( numout ) ! standard model output file
!
numout = 6 ! redefine numout in case it is used after this point...
!
END SUBROUTINE nemo_closefile
SUBROUTINE nemo_alloc
!!----------------------------------------------------------------------
!! *** ROUTINE nemo_alloc ***
!!
!! ** Purpose : Allocate all the dynamic arrays of the OCE modules
!!
!! ** Method :
!!----------------------------------------------------------------------
USE diawri , ONLY : dia_wri_alloc
USE dom_oce , ONLY : dom_oce_alloc
USE bdy_oce , ONLY : ln_bdy, bdy_oce_alloc
USE oce ! mandatory for sea-ice because needed for bdy arrays
!
INTEGER :: ierr
!!----------------------------------------------------------------------
!
ierr = dia_wri_alloc()
ierr = ierr + dom_oce_alloc() ! ocean domain
ierr = ierr + oce_alloc () ! (ts...) needed for agrif and/or SI3 and bdy
ierr = ierr + bdy_oce_alloc() ! bdy masks (incl. initialization)
!
CALL mpp_sum( 'nemogcm', ierr )
IF( ierr /= 0 ) CALL ctl_stop( 'STOP', 'nemo_alloc: unable to allocate standard ocean arrays' )
!
END SUBROUTINE nemo_alloc
SUBROUTINE nemo_set_cfctl(sn_cfctl, setto )
!!----------------------------------------------------------------------
!! *** ROUTINE nemo_set_cfctl ***
!!
!! ** Purpose : Set elements of the output control structure to setto.
!!
!! ** Method : Note this routine can be used to switch on/off some
!! types of output for selected areas.
!!----------------------------------------------------------------------
TYPE(sn_ctl), INTENT(inout) :: sn_cfctl
LOGICAL , INTENT(in ) :: setto
!!----------------------------------------------------------------------
sn_cfctl%l_runstat = setto
sn_cfctl%l_trcstat = setto
sn_cfctl%l_oceout = setto
sn_cfctl%l_layout = setto
sn_cfctl%l_prtctl = setto
sn_cfctl%l_prttrc = setto
sn_cfctl%l_oasout = setto
END SUBROUTINE nemo_set_cfctl
!!======================================================================
END MODULE nemogcm