Merge branch '83-makenemo-t-option-not-working-with-agrif-based-configurations' into 'main'

Resolve "makenemo "-t" option not working with AGRIF based configurations"

Closes #83

See merge request !130

(cherry picked from commit 655e45c3)

c5ba3101 set correct directory variables for AGRIF

mk/agrifpp.sh

@@ -60,8 +60,8 @@ if [ "$MYFILE" == "agrif2model.f90" ];then
    if [ -d ${MYDIR}/${NEW_CONF}/WORK ]; then
       \cp ${MYDIR}/${NEW_CONF}/WORK/${MYFILE/.f90/.F90} ${MYDIR}/${NEW_CONF}/NEMOFILES/obj/$MYFILE
    else
-      \cp ${MYDIR}/${NEW_CONF}/src/${MYFILE/.f90/.F90} ${MYDIR}/${NEW_CONF}/NEMOFILES/obj/$MYFILE
+      \cp ${CONFIG_DIR}/${NEW_CONF}/WORK/${MYFILE/.f90/.F90} ${MYDIR}/${NEW_CONF}/NEMOFILES/obj/$MYFILE
    fi   
 else
 cd ${MYDIR}/${NEW_CONF}/NEMOFILES/ppsrc/nemo ; ${MYDIR}/${NEW_CONF}/NEMOFILES/conv ${MYDIR}/${NEW_CONF}/NEMOFILES/agrif_oce.in -rm -incdir ${MYDIR}/${NEW_CONF}/NEMOFILES/inc -comdirout ${MYDIR}/${NEW_CONF}/NEMOFILES/obj -convfile ${MYFILE} > /dev/null 
-fi
\ No newline at end of file
+fi

mk/bld.cfg

@@ -14,7 +14,7 @@ search_src           1
 
 src::ioipsl               $MAIN_DIR/ext/IOIPSL/src
 src::agrif                $MAIN_DIR/ext/AGRIF/AGRIF_FILES
-src::nemo                 $CONFIG_DIR/$NEW_CONF/NEMOFILES/obj
+src::nemo                 $NEMO_TDIR/$NEW_CONF/NEMOFILES/obj
 src::ppr_1d               $MAIN_DIR/ext/PPR/src
 
 
@@ -41,7 +41,7 @@ bld::pp::ioipsl   1
 bld::pp::nemo     1
 bld::pp::agrif    1
 bld::pp::ppr_1d   1
-bld::tool::fppflags::nemo      %FPPFLAGS -I$CONFIG_DIR/$NEW_CONF/NEMOFILES/inc
+bld::tool::fppflags::nemo      %FPPFLAGS -I$NEMO_TDIR/$NEW_CONF/NEMOFILES/inc
 bld::tool::fppflags::ioipsl    %FPPFLAGS
 bld::tool::fppflags::agrif     %FPPFLAGS -include ${MAIN_DIR}/ext/AGRIF/nemo_mpi.h
 bld::tool::fppflags::ppr_1d    %FPPFLAGS