2024 WP action: remove MLF

Remove MLF from the code.
Define key_RK3 by default.
The key_RK3 is found in 52 routines...

src/TOP/trcbc.F90
src/TOP/PISCES/P4Z/p4zsms.F90
src/TOP/trcsms.F90
src/TOP/TRP/trcatf.F90
src/TOP/TRP/trctrp.F90
src/TOP/TRP/trcadv.F90
src/TOP/TRP/trcrad.F90
src/TOP/trcrst.F90
src/TOP/trcstp.F90
src/NST/agrif_oce_sponge.F90
src/NST/agrif_all_update.F90
src/NST/agrif_top_sponge.F90
src/NST/agrif_oce_update.F90
src/NST/agrif_top_update.F90
src/NST/agrif_oce_interp.F90
src/NST/agrif_user.F90
src/SWE/stprk3.F90
src/SWE/nemogcm.F90
src/OCE/oce.F90
src/OCE/SBC/sbcapr.F90
src/OCE/SBC/sbcmod.F90
src/OCE/SBC/sbcrnf.F90
src/OCE/SBC/sbcssm.F90
src/OCE/SBC/sbc_oce.F90
src/OCE/ISF/isfcav.F90
src/OCE/ISF/isf_oce.F90
src/OCE/ISF/isfhdiv.F90
src/OCE/ISF/isfpar.F90
src/OCE/ISF/isfstp.F90
src/OCE/TRA/traadv.F90
src/OCE/TRA/traisf.F90
src/OCE/TRA/traadv_fct.F90
src/OCE/TRA/traqsr.F90
src/OCE/TRA/traatf_qco.F90
src/OCE/DYN/dynhpg.F90
src/OCE/DYN/dynadv_up3.F90
src/OCE/DYN/dynadv_cen2.F90
src/OCE/DYN/dynspg_ts.F90
src/OCE/DYN/dynzdf.F90
src/OCE/DYN/sshwzv.F90
src/OCE/DIA/diahsb.F90
src/OCE/DOM/istate.F90
src/OCE/DOM/domqco.F90
src/OCE/DOM/domain.F90
src/OCE/DOM/dom_oce.F90
src/OCE/nemogcm.F90
src/OCE/IOM/restart.F90
src/OCE/stpmlf.F90
src/OFF/nemogcm.F90
src/OFF/dtadyn.F90
tests/ISOMIP+/MY_SRC/istate.F90
tests/ISOMIP+/MY_SRC/isf_oce.F90

changed the description

added issue nemo#463 (closed)

added issue nemo#464 (closed)

added issue nemo#465 (closed)

added issue nemo#466 (closed)

added issue nemo#467 (closed)

added issue nemo#468 (closed)

added issue nemo#469 (closed)

added issue nemo#470 (closed)

added issue nemo#471 (closed)

added issue nemo#472 (closed)

added issue nemo#473 (closed)

added issue nemo#474 (closed)

Note to remove the routines where we have a specific rk3 replacement. e.g. trcstp.F90 vs trcstp_rk3.F90

added issue nemo#475 (closed)

added issue nemo#476 (closed)

added issue nemo#477 (closed)

added issue nemo#478 (closed)

added issue nemo#479 (closed)

The pipeline is OK

We compare main f90 files of f0d124b0 and f8662586 for the following configurations :

• ORCA2_ICE_PISCES
• AGRIF_DEMO
• SWG
• ISOMIP+

NO significant changes except for agrif_oce_update.F90

added issue nemo#480 (closed)

added issue nemo#481 (closed)

added issue nemo#482 (closed)

added issue nemo#483 (closed)

added issue nemo#484 (closed)

added issue nemo#485 (closed)

added issue nemo#486 (closed)

added issue nemo#487 (closed)

I ran sette.sh -A for

• branch_5.0: f0d124b0
• main: a22bf5ea

All run.sat files are exactly equals. incredible!
This is the run.stat files I compared

• AGRIF_DEMO_NOAGRIF_ST
• AGRIF_DEMO_ST
• C1D_PAPA_ST
• GYRE_PISCES_ST
• ORCA2_ICE_OBS_ST
• ORCA2_ICE_PISCES_ST
• ORCA2_SAS_ICE_ST
• WED025_ST
• ICE_AGRIF_ST
• ISOMIP+_ST
• LOCK_EXCHANGE_ST
• OVERFLOW_ST
• SWG_ST
• VORTEX_ST

AMM12 is missing because I did not had the proper input file...

I also confirm no results changes between branch_5.0 and main@6513f18d

added issue nemo#488 (closed)

added issue nemo#490 (closed)

added issue nemo#495 (closed)

CAUTION do not forget :

• ldf_eke has disappeared see nemo#494 (closed)
• zdf_mfc has disappeared
• dynspg should disappear
• SWE needs come cleaning
• revisit TRD see #487
• revisit zdfphysee nemo#408 (closed)
• SAO is broken

added issue nemo#497 (closed)

All run.stat files are exactly the same between branch_5.0 (21fc761a) and the main (398e124d)

closed

moved issue nemo#487 (closed) to epic &33