subjob_ablhpg.sh

#!/bin/bash

set +xv


# ARGUMENTS
date_beg=$1
date_end=$2
nbday=$(( ($(date -d "${date_end}H00 + 1 day" +%s) - $(date -d "${date_beg}H00" +"%s") )/(60*60*24) ))

for d in $(seq -f "%02g" 0 $((nbday-1))); do

  # TIME
  date=$(date -d "${date_beg}H00 + ${d} days" +"%C%y%m%d")
  ym=${date:0:6}

  # DIRECTORIES & FILES
  p2D="${SCRATCH_DIR}/NC_${GRID/N/F}/${ym}/surf2D_L1_${BASE_NAME}_${date}.nc"
  p3D="${SCRATCH_DIR}/NC_${GRID/N/F}/${ym}/inst3D_L107-137_${BASE_NAME}_${date}.nc"
  pmsk="${SCRATCH_DIR}/NC_${GRID/N/F}/${ym}/mask0_${BASE_NAME%_ana*}_NNint_20120101.nc"
  f2D=$(basename $p2D)   ; d2D=$(dirname $p2D)
  f3D=$(basename $p3D)   ; d3D=$(dirname $p3D)
  fmsk=$(basename $pmsk) ; dmsk=$(dirname $pmsk)
  fhpg=${f3D/inst3D/hpg}
  
  if [ ! -s ${d2D}/${fhpg} ]; then
  
    if [[ -s ${p2D} && -s ${p3D} ]]; then
      while [ $(squeue -u $USER -h -t pending,running -r | wc -l) -ge 90 ]; do echo "sleeping..."; sleep 10; done
      sbatch --job-name=ablhpg_${date} --export=SCRATCH_DIR=${SCRATCH_DIR},BASE_NAME=${BASE_NAME},DIR_NEMO=${DIR_NEMO},GRID=${GRID} ${DIR_SRC}/job_ablhpg.sbatch ${date}
    else
      echo "-ABL_HPG: ERROR: input files not found"; exit 1
    fi
  
  fi
  
  while [[ ${date} -eq ${date_end} && $(squeue -u $USER -h -t pending,running -r -o '%20j' | grep ablhpg_${ym} | wc -l) -gt 0 ]]; do echo "sleeping..."; sleep 10; done
  
  if [ ${date} -eq ${date_end} ]; then
    file_nb=$( eval "ls ${d2D%/*}/{${date_beg:0:6}..${date_end:0:6}}/${fhpg/${date}.nc/*{${date_beg:6:2}..${date_end:6:2}}}.nc 2>/dev/null" | wc -l )
    if [ ${nbday} -eq ${file_nb} ]; then
      echo "-ABL_HPG: OK"
    else
      echo "-ABL_HPG: ERROR"; exit 1
    fi
  fi

done

exit 0