subjob_ncochunk.sh

#!/bin/bash

set +xv


# ARGUMENTS
date_beg=$1
date_end=$2
nbday=$(( ($(date -d "${date_end}H00 + 1 day" +%s) - $(date -d "${date_beg}H00" +"%s") )/(60*60*24) ))
if [ -n "$3" ]; then
  var_list=( $3 )
else
  var_list=( uwnd vwnd uhpg vhpg tpot humi )
fi

for d in $(seq -f "%02g" 0 $((nbday-1))); do

  # TIME
  date=$(date -d "${date_beg}H00 + ${d} days" +"%C%y%m%d")
  ym=${date:0:6}

  # DIRECTORIES & FILES
  d="${SCRATCH_DIR}/NC_${GRID/N/F}/${ym}"
  f="abl_L50Z10_${BASE_NAME}_${date}_misstodis.nc"

for v in ${var_list[@]}; do

  finp=${v}_${f}
  fout=${finp%.nc}_cnk64.nc

  if [ ! -s ${d}/${fout} ]; then
    if [ -s ${d}/${finp} ]; then
      while [ $(squeue -u $USER -h -t pending,running -r | wc -l) -ge 90 ]; do echo "sleeping..."; sleep 10; done
      sbatch --job-name=ncochunk_${date} --export=SCRATCH_DIR=${SCRATCH_DIR},BASE_NAME=${BASE_NAME},GRID=${GRID} ${DIR_SRC}/job_ncochunk.sbatch ${date} ${v}
    else
      echo "-NCO_CHUNK: ERROR: input files not found"; exit 1
    fi
  fi

done

while [[ ${date} -eq ${date_end} && $(squeue -u $USER -h -t pending,running -r -o '%20j' | grep ncochunk_${ym} | wc -l) -gt 0 ]]; do echo "sleeping..."; sleep 10; done

if [ ${date} -eq ${date_end} ]; then
  fall=${f/${date}_misstodis.nc/*{${date_beg:6:2}..${date_end:6:2}}}_misstodis_cnk64.nc
  if [ ${#var_list[@]} -gt 1 ]; then
    file_nb=$( eval "ls ${d%/*}/{${date_beg:0:6}..${date_end:0:6}}/{$(tr ' ' ',' <<< ${var_list[*]})}_${fall} 2>/dev/null" | wc -l )
  else
    file_nb=$( eval "ls ${d%/*}/{${date_beg:0:6}..${date_end:0:6}}/${var_list[*]}_${fall} 2>/dev/null" | wc -l )
  fi
  if [ $((nbday*${#var_list[@]})) -eq ${file_nb} ]; then
    echo "-NCO_CHUNK: OK"
  else
    echo "-NCO_CHUNK: ERROR"
    exit 1
  fi
fi

done

exit 0