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MODULE obs_fbm
!!======================================================================
!! *** MODULE obs_fbm ***
!! Observation operators : I/O + tools for feedback files
!!======================================================================
!! History :
!! ! 08-11 (K. Mogensen) Initial version
!!----------------------------------------------------------------------
!!----------------------------------------------------------------------
!! init_obfbdata : Initialize sizes in obfbdata structure
!! alloc_obfbdata : Allocate data in an obfbdata structure
!! dealloc_obfbdata : Dellocate data in an obfbdata structure
!! copy_obfbdata : Copy an obfbdata structure
!! subsamp_obfbdata : Sumsample an obfbdata structure
!! merge_obfbdata : Merge multiple obfbdata structures into an one.
!! write_obfbdata : Write an obfbdata structure into a netCDF file.
!! read_obfbdata : Read an obfbdata structure from a netCDF file.
!!----------------------------------------------------------------------
USE netcdf
USE obs_utils ! Various utilities for observation operators
IMPLICIT NONE
PUBLIC
! Type kinds for feedback data.
INTEGER, PARAMETER :: fbsp = SELECTED_REAL_KIND( 6, 37) !: single precision
INTEGER, PARAMETER :: fbdp = SELECTED_REAL_KIND(12,307) !: double precision
! Parameters for string lengths.
INTEGER, PARAMETER :: ilenwmo = 8 !: Length of station identifier
INTEGER, PARAMETER :: ilentyp = 4 !: Length of type
INTEGER, PARAMETER :: ilenname = 8 !: Length of variable names
INTEGER, PARAMETER :: ilengrid = 1 !: Grid (e.g. 'T') length
INTEGER, PARAMETER :: ilenjuld = 14 !: Lenght of reference julian date
INTEGER, PARAMETER :: idefnqcf = 2 !: Default number of words in QC
! flags
INTEGER, PARAMETER :: ilenlong = 128 !: Length of long name
INTEGER, PARAMETER :: ilenunit = 32 !: Length of units
! Missinge data indicators
INTEGER, PARAMETER :: fbimdi = -99999 !: Integers
REAL(fbsp), PARAMETER :: fbrmdi = 99999 !: Reals
! Main data structure for observation feedback data.
TYPE obfbdata
LOGICAL :: lalloc !: Allocation status for data
LOGICAL :: lgrid !: Include grid search info
INTEGER :: nvar !: Number of variables
INTEGER :: nobs !: Number of observations
INTEGER :: nlev !: Number of levels
INTEGER :: nadd !: Number of additional entries
INTEGER :: next !: Number of extra variables
INTEGER :: nqcf !: Number of words per qc flag
CHARACTER(LEN=ilenwmo), DIMENSION(:), POINTER :: &
& cdwmo !: Identifier
CHARACTER(LEN=ilentyp), DIMENSION(:), POINTER :: &
& cdtyp !: Instrument type
CHARACTER(LEN=ilenjuld) :: &
& cdjuldref !: Julian date reference
INTEGER, DIMENSION(:), POINTER :: &
& kindex !: Index of observations in the original file
INTEGER, DIMENSION(:), POINTER :: &
& ioqc, & !: Observation QC
& ipqc, & !: Position QC
& itqc !: Time QC
INTEGER, DIMENSION(:,:), POINTER :: &
& ioqcf, & !: Observation QC flags
& ipqcf, & !: Position QC flags
& itqcf !: Time QC flags
INTEGER, DIMENSION(:,:), POINTER :: &
& idqc !: Depth QC
INTEGER, DIMENSION(:,:,:), POINTER :: &
& idqcf !: Depth QC flags
REAL(KIND=fbdp), DIMENSION(:), POINTER :: &
& plam, & !: Longitude
& pphi, & !: Latitude
& ptim !: Time
REAL(KIND=fbsp), DIMENSION(:,:), POINTER :: &
& pdep !: Depth
CHARACTER(LEN=ilenname), DIMENSION(:), POINTER :: &
& cname !: Name of variable
REAL(fbsp), DIMENSION(:,:,:), POINTER :: &
& pob !: Observation
CHARACTER(LEN=ilenlong), DIMENSION(:), POINTER :: &
& coblong !: Observation long name (for output)
CHARACTER(LEN=ilenunit), DIMENSION(:), POINTER :: &
& cobunit !: Observation units (for output)
INTEGER, DIMENSION(:,:), POINTER :: &
& ivqc !: Variable QC
INTEGER, DIMENSION(:,:,:), POINTER :: &
& ivqcf !: Variable QC flags
INTEGER, DIMENSION(:,:,:), POINTER :: &
& ivlqc !: Variable level QC
INTEGER, DIMENSION(:,:,:,:), POINTER :: &
& ivlqcf !: Variable level QC flags
INTEGER, DIMENSION(:,:), POINTER :: &
& iproc, & !: Processor of obs (no I/O for this variable).
& iobsi, & !: Global i index
& iobsj !: Global j index
INTEGER, DIMENSION(:,:,:), POINTER :: &
& iobsk !: k index
CHARACTER(LEN=ilengrid), DIMENSION(:), POINTER :: &
& cgrid !: Grid for this variable
CHARACTER(LEN=ilenname), DIMENSION(:), POINTER :: &
& caddname !: Additional entries names
CHARACTER(LEN=ilenlong), DIMENSION(:,:), POINTER :: &
& caddlong !: Additional entries long name (for output)
CHARACTER(LEN=ilenunit), DIMENSION(:,:), POINTER :: &
& caddunit !: Additional entries units (for output)
REAL(fbsp), DIMENSION(:,:,:,:) , POINTER :: &
& padd !: Additional entries
CHARACTER(LEN=ilenname), DIMENSION(:), POINTER :: &
& cextname !: Extra variables names
CHARACTER(LEN=ilenlong), DIMENSION(:), POINTER :: &
& cextlong !: Extra variables long name (for output)
CHARACTER(LEN=ilenunit), DIMENSION(:), POINTER :: &
& cextunit !: Extra variables units (for output)
REAL(fbsp), DIMENSION(:,:,:) , POINTER :: &
& pext !: Extra variables
END TYPE obfbdata
PRIVATE putvaratt_obfbdata
!!----------------------------------------------------------------------
!! NEMO/OCE 4.0 , NEMO Consortium (2018)
!! $Id: obs_fbm.F90 10068 2018-08-28 14:09:04Z nicolasmartin $
!! Software governed by the CeCILL license (see ./LICENSE)
!!----------------------------------------------------------------------
CONTAINS
SUBROUTINE init_obfbdata( fbdata )
!!----------------------------------------------------------------------
!! *** ROUTINE init_obfbdata ***
!!
!! ** Purpose : Initialize sizes in obfbdata structure
!!
!! ** Method :
!!
!! ** Action :
!!
!!----------------------------------------------------------------------
!! * Arguments
TYPE(obfbdata) :: fbdata ! obsfbdata structure
fbdata%nvar = 0
fbdata%nobs = 0
fbdata%nlev = 0
fbdata%nadd = 0
fbdata%next = 0
fbdata%nqcf = idefnqcf
fbdata%lalloc = .FALSE.
fbdata%lgrid = .FALSE.
END SUBROUTINE init_obfbdata
SUBROUTINE alloc_obfbdata( fbdata, kvar, kobs, klev, kadd, kext, lgrid, &
& kqcf)
!!----------------------------------------------------------------------
!! *** ROUTINE alloc_obfbdata ***
!!
!! ** Purpose : Allocate data in an obfbdata structure
!!
!! ** Method :
!!
!! ** Action :
!!
!!----------------------------------------------------------------------
!! * Arguments
TYPE(obfbdata) :: fbdata ! obsfbdata structure to be allocated
INTEGER, INTENT(IN) :: kvar ! Number of variables
INTEGER, INTENT(IN) :: kobs ! Number of observations
INTEGER, INTENT(IN) :: klev ! Number of levels
INTEGER, INTENT(IN) :: kadd ! Number of additional entries
INTEGER, INTENT(IN) :: kext ! Number of extra variables
LOGICAL, INTENT(IN) :: lgrid ! Include grid search information
INTEGER, OPTIONAL :: kqcf ! Number of words for QC flags
!! * Local variables
INTEGER :: ji
INTEGER :: jv
! Check allocation status and deallocate previous allocated structures
IF ( fbdata%lalloc ) THEN
CALL dealloc_obfbdata( fbdata )
ENDIF
! Set dimensions
fbdata%lalloc = .TRUE.
fbdata%nvar = kvar
fbdata%nobs = kobs
fbdata%nlev = MAX( klev, 1 )
fbdata%nadd = kadd
fbdata%next = kext
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IF ( PRESENT(kqcf) ) THEN
fbdata%nqcf = kqcf
ELSE
fbdata%nqcf = idefnqcf
ENDIF
! Set data not depending on number of observations
fbdata%cdjuldref = REPEAT( 'X', ilenjuld )
! Allocate and initialize standard data
ALLOCATE( &
& fbdata%cname(fbdata%nvar), &
& fbdata%coblong(fbdata%nvar), &
& fbdata%cobunit(fbdata%nvar) &
& )
DO ji = 1, fbdata%nvar
WRITE(fbdata%cname(ji),'(A,I2.2)')'V_',ji
fbdata%coblong(ji) = REPEAT( ' ', ilenlong )
fbdata%cobunit(ji) = REPEAT( ' ', ilenunit )
END DO
! Optionally also store grid search information
IF ( lgrid ) THEN
ALLOCATE ( &
& fbdata%cgrid(fbdata%nvar) &
& )
fbdata%cgrid(:) = REPEAT( 'X', ilengrid )
fbdata%lgrid = .TRUE.
ENDIF
! Allocate and initialize additional entries if present
IF ( fbdata%nadd > 0 ) THEN
ALLOCATE( &
& fbdata%caddname(fbdata%nadd), &
& fbdata%caddlong(fbdata%nadd, fbdata%nvar), &
& fbdata%caddunit(fbdata%nadd, fbdata%nvar) &
& )
DO ji = 1, fbdata%nadd
WRITE(fbdata%caddname(ji),'(A,I2.2)')'A',ji
END DO
DO jv = 1, fbdata%nvar
DO ji = 1, fbdata%nadd
fbdata%caddlong(ji,jv) = REPEAT( ' ', ilenlong )
fbdata%caddunit(ji,jv) = REPEAT( ' ', ilenunit )
END DO
END DO
ENDIF
! Allocate and initialize additional variables if present
IF ( fbdata%next > 0 ) THEN
ALLOCATE( &
& fbdata%cextname(fbdata%next), &
& fbdata%cextlong(fbdata%next), &
& fbdata%cextunit(fbdata%next) &
& )
DO ji = 1, fbdata%next
WRITE(fbdata%cextname(ji),'(A,I2.2)')'E_',ji
fbdata%cextlong(ji) = REPEAT( ' ', ilenlong )
fbdata%cextunit(ji) = REPEAT( ' ', ilenunit )
END DO
ENDIF
! Data depending on number of observations is only allocated if nobs>0
IF ( fbdata%nobs > 0 ) THEN
ALLOCATE( &
& fbdata%cdwmo(fbdata%nobs), &
& fbdata%cdtyp(fbdata%nobs), &
& fbdata%ioqc(fbdata%nobs), &
& fbdata%ioqcf(fbdata%nqcf,fbdata%nobs), &
& fbdata%ipqc(fbdata%nobs), &
& fbdata%ipqcf(fbdata%nqcf,fbdata%nobs), &
& fbdata%itqc(fbdata%nobs), &
& fbdata%itqcf(fbdata%nqcf,fbdata%nobs), &
& fbdata%idqc(fbdata%nlev,fbdata%nobs), &
& fbdata%idqcf(fbdata%nqcf,fbdata%nlev,fbdata%nobs), &
& fbdata%plam(fbdata%nobs), &
& fbdata%pphi(fbdata%nobs), &
& fbdata%pdep(fbdata%nlev,fbdata%nobs), &
& fbdata%ptim(fbdata%nobs), &
& fbdata%kindex(fbdata%nobs), &
& fbdata%ivqc(fbdata%nobs,fbdata%nvar), &
& fbdata%ivqcf(fbdata%nqcf,fbdata%nobs,fbdata%nvar), &
& fbdata%ivlqc(fbdata%nlev,fbdata%nobs,fbdata%nvar), &
& fbdata%ivlqcf(fbdata%nqcf,fbdata%nlev,fbdata%nobs,fbdata%nvar), &
& fbdata%pob(fbdata%nlev,fbdata%nobs,fbdata%nvar) &
& )
fbdata%kindex(:) = fbimdi
fbdata%cdwmo(:) = REPEAT( 'X', ilenwmo )
fbdata%cdtyp(:) = REPEAT( 'X', ilentyp )
fbdata%ioqc(:) = fbimdi
fbdata%ioqcf(:,:) = fbimdi
fbdata%ipqc(:) = fbimdi
fbdata%ipqcf(:,:) = fbimdi
fbdata%itqc(:) = fbimdi
fbdata%itqcf(:,:) = fbimdi
fbdata%idqc(:,:) = fbimdi
fbdata%idqcf(:,:,:) = fbimdi
fbdata%plam(:) = fbrmdi
fbdata%pphi(:) = fbrmdi
fbdata%pdep(:,:) = fbrmdi
fbdata%ptim(:) = fbrmdi
fbdata%ivqc(:,:) = fbimdi
fbdata%ivqcf(:,:,:) = fbimdi
fbdata%ivlqc(:,:,:) = fbimdi
fbdata%ivlqcf(:,:,:,:) = fbimdi
fbdata%pob(:,:,:) = fbrmdi
! Optionally also store grid search information
IF ( lgrid ) THEN
ALLOCATE ( &
& fbdata%iproc(fbdata%nobs,fbdata%nvar), &
& fbdata%iobsi(fbdata%nobs,fbdata%nvar), &
& fbdata%iobsj(fbdata%nobs,fbdata%nvar), &
& fbdata%iobsk(fbdata%nlev,fbdata%nobs,fbdata%nvar) &
& )
fbdata%iproc(:,:) = fbimdi
fbdata%iobsi(:,:) = fbimdi
fbdata%iobsj(:,:) = fbimdi
fbdata%iobsk(:,:,:) = fbimdi
fbdata%lgrid = .TRUE.
ENDIF
! Allocate and initialize additional entries if present
IF ( fbdata%nadd > 0 ) THEN
ALLOCATE( &
& fbdata%padd(fbdata%nlev,fbdata%nobs,fbdata%nadd,fbdata%nvar) &
& )
fbdata%padd(:,:,:,:) = fbrmdi
ENDIF
! Allocate and initialize additional variables if present
IF ( fbdata%next > 0 ) THEN
ALLOCATE( &
& fbdata%pext(fbdata%nlev,fbdata%nobs,fbdata%next) &
& )
fbdata%pext(:,:,:) = fbrmdi
ENDIF
ENDIF
END SUBROUTINE alloc_obfbdata
SUBROUTINE dealloc_obfbdata( fbdata )
!!----------------------------------------------------------------------
!! *** ROUTINE dealloc_obfbdata ***
!!
!! ** Purpose : Deallocate data in an obfbdata strucure
!!
!! ** Method :
!!
!! ** Action :
!!
!!----------------------------------------------------------------------
!! * Arguments
TYPE(obfbdata) :: fbdata ! obsfbdata structure
! Deallocate data
DEALLOCATE( &
& fbdata%cname, &
& fbdata%coblong,&
& fbdata%cobunit &
& )
! Deallocate optional grid search information
IF ( fbdata%lgrid ) THEN
DEALLOCATE ( &
& fbdata%cgrid &
& )
ENDIF
! Deallocate additional entries
IF ( fbdata%nadd > 0 ) THEN
DEALLOCATE( &
& fbdata%caddname, &
& fbdata%caddlong, &
& fbdata%caddunit &
& )
ENDIF
! Deallocate extra variables
IF ( fbdata%next > 0 ) THEN
DEALLOCATE( &
& fbdata%cextname, &
& fbdata%cextlong, &
& fbdata%cextunit &
& )
ENDIF
! Deallocate arrays depending on number of obs (if nobs>0 only).
IF ( fbdata%nobs > 0 ) THEN
DEALLOCATE( &
& fbdata%cdwmo, &
& fbdata%cdtyp, &
& fbdata%ioqc, &
& fbdata%ioqcf, &
& fbdata%ipqc, &
& fbdata%ipqcf, &
& fbdata%itqc, &
& fbdata%itqcf, &
& fbdata%idqc, &
& fbdata%idqcf, &
& fbdata%plam, &
& fbdata%pphi, &
& fbdata%pdep, &
& fbdata%ptim, &
& fbdata%kindex, &
& fbdata%ivqc, &
& fbdata%ivqcf, &
& fbdata%ivlqc, &
& fbdata%ivlqcf, &
& fbdata%pob &
& )
! Deallocate optional grid search information
IF ( fbdata%lgrid ) THEN
DEALLOCATE ( &
& fbdata%iproc, &
& fbdata%iobsi, &
& fbdata%iobsj, &
& fbdata%iobsk &
& )
ENDIF
! Deallocate additional entries
IF ( fbdata%nadd > 0 ) THEN
DEALLOCATE( &
& fbdata%padd &
& )
ENDIF
! Deallocate extra variables
IF ( fbdata%next > 0 ) THEN
DEALLOCATE( &
& fbdata%pext &
& )
ENDIF
ENDIF
! Reset arrays sizes
fbdata%lalloc = .FALSE.
fbdata%lgrid = .FALSE.
fbdata%nvar = 0
fbdata%nobs = 0
fbdata%nlev = 0
fbdata%nadd = 0
fbdata%next = 0
END SUBROUTINE dealloc_obfbdata
SUBROUTINE copy_obfbdata( fbdata1, fbdata2, kadd, kext, lgrid, kqcf )
!!----------------------------------------------------------------------
!! *** ROUTINE copy_obfbdata ***
!!
!! ** Purpose : Copy an obfbdata structure
!!
!! ** Method : Copy all data from fbdata1 to fbdata2
!! If fbdata2 is allocated it needs to be compliant
!! with fbdata1.
!! Additional entries can be added by setting nadd
!! Additional extra fields can be added by setting next
!! Grid information can be included with lgrid=.true.
!!
!! ** Action :
!!
!!----------------------------------------------------------------------
!! * Arguments
TYPE(obfbdata) :: fbdata1 ! Input obsfbdata structure
TYPE(obfbdata) :: fbdata2 ! Output obsfbdata structure
INTEGER, INTENT(IN), OPTIONAL :: kadd ! Number of additional entries
INTEGER, INTENT(IN), OPTIONAL :: kext ! Number of extra variables
INTEGER, INTENT(IN), OPTIONAL :: kqcf ! Number of words per qc flags
LOGICAL, OPTIONAL :: lgrid ! Grid info on output file
!! * Local variables
INTEGER :: nadd
INTEGER :: next
INTEGER :: nqcf
LOGICAL :: llgrid
INTEGER :: jv
INTEGER :: je
INTEGER :: ji
INTEGER :: jk
INTEGER :: jq
! Check allocation status of fbdata1
IF ( .NOT. fbdata1%lalloc ) THEN
CALL fatal_error( 'copy_obfbdata: input data not allocated', &
& __LINE__ )
ENDIF
! If nadd,next not specified use the ones from fbdata1
! Otherwise check that they have large than the original ones
IF ( PRESENT(kadd) ) THEN
nadd = kadd
IF ( nadd < fbdata1%nadd ) THEN
CALL warning ( 'copy_obfbdata: ' // &
& 'nadd smaller than input nadd', __LINE__ )
ENDIF
ELSE
nadd = fbdata1%nadd
ENDIF
IF ( PRESENT(kext) ) THEN
next = kext
IF ( next < fbdata1%next ) THEN
CALL fatal_error( 'copy_obfbdata: ' // &
& 'next smaller than input next', __LINE__ )
ENDIF
ELSE
next = fbdata1%next
ENDIF
IF ( PRESENT(lgrid) ) THEN
llgrid = lgrid
IF ( fbdata1%lgrid .AND. (.NOT. llgrid) ) THEN
CALL fatal_error( 'copy_obfbdata: ' // &
& 'switching off grid info not possible', &
& __LINE__ )
ENDIF
ELSE
llgrid = fbdata1%lgrid
ENDIF
IF ( PRESENT(kqcf) ) THEN
nqcf = kqcf
IF ( nqcf < fbdata1%nqcf ) THEN
CALL fatal_error( 'copy_obfbdata: ' // &
& 'nqcf smaller than input nqcf', __LINE__ )
ENDIF
ELSE
nqcf = fbdata1%nqcf
ENDIF
! Check allocation status of fbdata2 and
! a) check that it conforms in size if already allocated
! b) allocate it if not already allocated
IF ( fbdata2%lalloc ) THEN
IF ( fbdata1%nvar > fbdata2%nvar ) THEN
CALL fatal_error( 'copy_obfbdata: ' // &
& 'output kvar smaller than input kvar', __LINE__ )
ENDIF
IF ( fbdata1%nobs > fbdata2%nobs ) THEN
CALL fatal_error( 'copy_obfbdata: ' // &
& 'output kobs smaller than input kobs', __LINE__ )
ENDIF
IF ( fbdata1%nlev > fbdata2%nlev ) THEN
CALL fatal_error( 'copy_obfbdata: ' // &
& 'output klev smaller than input klev', __LINE__ )
ENDIF
IF ( fbdata1%nadd > fbdata2%nadd ) THEN
CALL warning ( 'copy_obfbdata: ' // &
& 'output nadd smaller than input nadd', __LINE__ )
ENDIF
IF ( fbdata1%next > fbdata2%next ) THEN
CALL fatal_error( 'copy_obfbdata: ' // &
& 'output next smaller than input next', __LINE__ )
ENDIF
IF ( fbdata1%lgrid .NEQV. fbdata2%lgrid ) THEN
CALL fatal_error( 'copy_obfbdata: ' // &
& 'lgrid inconsistent', __LINE__ )
ENDIF
IF ( fbdata1%next > fbdata2%next ) THEN
CALL fatal_error( 'copy_obfbdata: ' // &
& 'output next smaller than input next', __LINE__ )
ENDIF
IF ( fbdata1%nqcf > fbdata2%nqcf ) THEN
CALL fatal_error( 'copy_obfbdata: ' // &
& 'output smaller than input kext', __LINE__ )
ENDIF
ELSE
CALL alloc_obfbdata( fbdata2, fbdata1%nvar, fbdata1%nobs, &
& fbdata1%nlev, nadd, next, llgrid, kqcf = nqcf )
ENDIF
! Copy the header data
fbdata2%cdjuldref = fbdata1%cdjuldref
DO ji = 1, fbdata1%nobs
fbdata2%cdwmo(ji) = fbdata1%cdwmo(ji)
fbdata2%cdtyp(ji) = fbdata1%cdtyp(ji)
fbdata2%ioqc(ji) = fbdata1%ioqc(ji)
fbdata2%ipqc(ji) = fbdata1%ipqc(ji)
fbdata2%itqc(ji) = fbdata1%itqc(ji)
fbdata2%plam(ji) = fbdata1%plam(ji)
fbdata2%pphi(ji) = fbdata1%pphi(ji)
fbdata2%ptim(ji) = fbdata1%ptim(ji)
fbdata2%kindex(ji) = fbdata1%kindex(ji)
DO jq = 1, fbdata1%nqcf
fbdata2%ioqcf(jq,ji) = fbdata1%ioqcf(jq,ji)
fbdata2%ipqcf(jq,ji) = fbdata1%ipqcf(jq,ji)
fbdata2%itqcf(jq,ji) = fbdata1%itqcf(jq,ji)
END DO
DO jk = 1, fbdata1%nlev
fbdata2%idqc(jk,ji) = fbdata1%idqc(jk,ji)
fbdata2%pdep(jk,ji) = fbdata1%pdep(jk,ji)
DO jq = 1, fbdata1%nqcf
fbdata2%idqcf(jq,jk,ji) = fbdata1%idqcf(jq,jk,ji)
END DO
END DO
END DO
! Copy the variable data
DO jv = 1, fbdata1%nvar
fbdata2%cname(jv) = fbdata1%cname(jv)
fbdata2%coblong(jv) = fbdata1%coblong(jv)
fbdata2%cobunit(jv) = fbdata1%cobunit(jv)
DO ji = 1, fbdata1%nobs
fbdata2%ivqc(ji,jv) = fbdata1%ivqc(ji,jv)
DO jq = 1, fbdata1%nqcf
fbdata2%ivqcf(jq,ji,jv) = fbdata1%ivqcf(jq,ji,jv)
END DO
DO jk = 1, fbdata1%nlev
fbdata2%ivlqc(jk,ji,jv) = fbdata1%ivlqc(jk,ji,jv)
fbdata2%pob(jk,ji,jv) = fbdata1%pob(jk,ji,jv)
DO jq = 1, fbdata1%nqcf
fbdata2%ivlqcf(jq,jk,ji,jv) = fbdata1%ivlqcf(jq,jk,ji,jv)
END DO
END DO
END DO
END DO
! Copy grid information
IF ( fbdata1%lgrid ) THEN
DO jv = 1, fbdata1%nvar
fbdata2%cgrid(jv) = fbdata1%cgrid(jv)
DO ji = 1, fbdata1%nobs
fbdata2%iproc(ji,jv) = fbdata1%iproc(ji,jv)
fbdata2%iobsi(ji,jv) = fbdata1%iobsi(ji,jv)
fbdata2%iobsj(ji,jv) = fbdata1%iobsj(ji,jv)
DO jk = 1, fbdata1%nlev
fbdata2%iobsk(jk,ji,jv) = fbdata1%iobsk(jk,ji,jv)
END DO
END DO
END DO
ENDIF
! Copy additional information
DO je = 1, MIN( fbdata1%nadd, fbdata2%nadd )
fbdata2%caddname(je) = fbdata1%caddname(je)
END DO
DO jv = 1, fbdata1%nvar
DO je = 1, MIN( fbdata1%nadd, fbdata2%nadd )
fbdata2%caddlong(je,jv) = fbdata1%caddlong(je,jv)
fbdata2%caddunit(je,jv) = fbdata1%caddunit(je,jv)
DO ji = 1, fbdata1%nobs
DO jk = 1, fbdata1%nlev
fbdata2%padd(jk,ji,je,jv) = fbdata1%padd(jk,ji,je,jv)
END DO
END DO
END DO
END DO
! Copy extra information
DO je = 1, fbdata1%next
fbdata2%cextname(je) = fbdata1%cextname(je)
fbdata2%cextlong(je) = fbdata1%cextlong(je)
fbdata2%cextunit(je) = fbdata1%cextunit(je)
END DO
DO je = 1, fbdata1%next
DO ji = 1, fbdata1%nobs
DO jk = 1, fbdata1%nlev
fbdata2%pext(jk,ji,je) = fbdata1%pext(jk,ji,je)
END DO
END DO
END DO
END SUBROUTINE copy_obfbdata
SUBROUTINE subsamp_obfbdata( fbdata1, fbdata2, llvalid )
!!----------------------------------------------------------------------
!! *** ROUTINE susbamp_obfbdata ***
!!
!! ** Purpose : Subsample an obfbdata structure based on the
!! logical mask.
!!
!! ** Method : Copy all data from fbdata1 to fbdata2 if
!! llvalid(obs)==true
!!
!! ** Action :
!!
!!----------------------------------------------------------------------
!! * Arguments
TYPE(obfbdata) :: fbdata1 ! Input obsfbdata structure
TYPE(obfbdata) :: fbdata2 ! Output obsfbdata structure
LOGICAL, DIMENSION(fbdata1%nobs) :: llvalid ! Grid info on output file
!! * Local variables
INTEGER :: nobs
INTEGER :: jv
INTEGER :: je
INTEGER :: ji
INTEGER :: jk
INTEGER :: jq
INTEGER :: ij
! Check allocation status of fbdata1
IF ( .NOT. fbdata1%lalloc ) THEN
CALL fatal_error( 'copy_obfbdata: input data not allocated', &
& __LINE__ )
ENDIF
! Check allocation status of fbdata2 and abort if already allocated
IF ( fbdata2%lalloc ) THEN
CALL fatal_error( 'subsample_obfbdata: ' // &
& 'fbdata2 already allocated', __LINE__ )
ENDIF
! Count number of subsampled observations
nobs = COUNT(llvalid)
! Allocate new data structure
CALL alloc_obfbdata( fbdata2, fbdata1%nvar, nobs, &
& fbdata1%nlev, fbdata1%nadd, fbdata1%next, &
& fbdata1%lgrid, kqcf = fbdata1%nqcf )
! Copy the header data
fbdata2%cdjuldref = fbdata1%cdjuldref
ij = 0
DO ji = 1, fbdata1%nobs
IF ( llvalid(ji) ) THEN
ij = ij +1
fbdata2%cdwmo(ij) = fbdata1%cdwmo(ji)
fbdata2%cdtyp(ij) = fbdata1%cdtyp(ji)
fbdata2%ioqc(ij) = fbdata1%ioqc(ji)
fbdata2%ipqc(ij) = fbdata1%ipqc(ji)
fbdata2%itqc(ij) = fbdata1%itqc(ji)
fbdata2%plam(ij) = fbdata1%plam(ji)
fbdata2%pphi(ij) = fbdata1%pphi(ji)
fbdata2%ptim(ij) = fbdata1%ptim(ji)
fbdata2%kindex(ij) = fbdata1%kindex(ji)
DO jq = 1, fbdata1%nqcf
fbdata2%ioqcf(jq,ij) = fbdata1%ioqcf(jq,ji)
fbdata2%ipqcf(jq,ij) = fbdata1%ipqcf(jq,ji)
fbdata2%itqcf(jq,ij) = fbdata1%itqcf(jq,ji)
END DO
DO jk = 1, fbdata1%nlev
fbdata2%idqc(jk,ij) = fbdata1%idqc(jk,ji)
fbdata2%pdep(jk,ij) = fbdata1%pdep(jk,ji)
DO jq = 1, fbdata1%nqcf
fbdata2%idqcf(jq,jk,ij) = fbdata1%idqcf(jq,jk,ji)
END DO
END DO
ENDIF
END DO
! Copy the variable data
DO jv = 1, fbdata1%nvar
fbdata2%cname(jv) = fbdata1%cname(jv)
fbdata2%coblong(jv) = fbdata1%coblong(jv)
fbdata2%cobunit(jv) = fbdata1%cobunit(jv)
ij = 0
DO ji = 1, fbdata1%nobs
IF ( llvalid(ji) ) THEN
ij = ij + 1
fbdata2%ivqc(ij,jv) = fbdata1%ivqc(ji,jv)
DO jq = 1, fbdata1%nqcf
fbdata2%ivqcf(jq,ij,jv) = fbdata1%ivqcf(jq,ji,jv)
END DO
DO jk = 1, fbdata1%nlev
fbdata2%ivlqc(jk,ij,jv) = fbdata1%ivlqc(jk,ji,jv)
fbdata2%pob(jk,ij,jv) = fbdata1%pob(jk,ji,jv)
DO jq = 1, fbdata1%nqcf
fbdata2%ivlqcf(jq,jk,ij,jv) = fbdata1%ivlqcf(jq,jk,ji,jv)
END DO
END DO
ENDIF
END DO
END DO
! Copy grid information
IF ( fbdata1%lgrid ) THEN
DO jv = 1, fbdata1%nvar
fbdata2%cgrid(jv) = fbdata1%cgrid(jv)
ij = 0
DO ji = 1, fbdata1%nobs
IF ( llvalid(ji) ) THEN
ij = ij + 1
fbdata2%iproc(ij,jv) = fbdata1%iproc(ji,jv)
fbdata2%iobsi(ij,jv) = fbdata1%iobsi(ji,jv)
fbdata2%iobsj(ij,jv) = fbdata1%iobsj(ji,jv)
DO jk = 1, fbdata1%nlev
fbdata2%iobsk(jk,ij,jv) = fbdata1%iobsk(jk,ji,jv)
END DO
ENDIF
END DO
END DO
ENDIF
! Copy additional information
DO je = 1, fbdata1%nadd
fbdata2%caddname(je) = fbdata1%caddname(je)
END DO
DO jv = 1, fbdata1%nvar
DO je = 1, fbdata1%nadd
fbdata2%caddlong(je,jv) = fbdata1%caddlong(je,jv)
fbdata2%caddunit(je,jv) = fbdata1%caddunit(je,jv)
ij = 0
DO ji = 1, fbdata1%nobs
IF ( llvalid(ji) ) THEN
ij = ij + 1
DO jk = 1, fbdata1%nlev
fbdata2%padd(jk,ij,je,jv) = fbdata1%padd(jk,ji,je,jv)
END DO
ENDIF
END DO
END DO
END DO
! Copy extra information
DO je = 1, fbdata1%next
fbdata2%cextname(je) = fbdata1%cextname(je)
fbdata2%cextlong(je) = fbdata1%cextlong(je)
fbdata2%cextunit(je) = fbdata1%cextunit(je)
END DO
DO je = 1, fbdata1%next
ij = 0
DO ji = 1, fbdata1%nobs
IF ( llvalid(ji) ) THEN
ij = ij + 1
DO jk = 1, fbdata1%nlev
fbdata2%pext(jk,ij,je) = fbdata1%pext(jk,ji,je)
END DO
ENDIF
END DO
END DO
END SUBROUTINE subsamp_obfbdata
SUBROUTINE merge_obfbdata( nsets, fbdatain, fbdataout, iset, inum, iind )
!!----------------------------------------------------------------------
!! *** ROUTINE merge_obfbdata ***
!!
!! ** Purpose : Merge multiple obfbdata structures into an one.
!!
!! ** Method : The order of elements is based on the indices in
!! iind.
!! All input data are assumed to be consistent. This
!! is assumed to be checked before calling this routine.
!! Likewise output data is assume to be consistent as
!! well without error checking.
!!
!! ** Action :
!!
!!----------------------------------------------------------------------
!! * Arguments
INTEGER, INTENT(IN):: nsets ! Number of input data sets
TYPE(obfbdata), DIMENSION(nsets) :: fbdatain ! Input obsfbdata structure
TYPE(obfbdata) :: fbdataout ! Output obsfbdata structure
INTEGER, INTENT(IN), DIMENSION(fbdataout%nobs) :: &
& iset ! Set number for a given obs.
INTEGER, INTENT(IN), DIMENSION(fbdataout%nobs) :: &
& inum ! Number within set for an obs
INTEGER, INTENT(IN), DIMENSION(fbdataout%nobs) :: &
& iind ! Indices for copying.
!! * Local variables
INTEGER :: js
INTEGER :: jo
INTEGER :: jv
INTEGER :: je
INTEGER :: ji
INTEGER :: jk
INTEGER :: jq
! Check allocation status of fbdatain
DO js = 1, nsets
IF ( .NOT. fbdatain(js)%lalloc ) THEN
CALL fatal_error( 'merge_obfbdata: input data not allocated', &
& __LINE__ )
ENDIF
END DO
! Check allocation status of fbdataout
IF ( .NOT.fbdataout%lalloc ) THEN
CALL fatal_error( 'merge_obfbdata: output data not allocated', &
& __LINE__ )
ENDIF
! Merge various names
DO jv = 1, fbdatain(1)%nvar
fbdataout%cname(jv) = fbdatain(1)%cname(jv)
fbdataout%coblong(jv) = fbdatain(1)%coblong(jv)
fbdataout%cobunit(jv) = fbdatain(1)%cobunit(jv)
IF ( fbdatain(1)%lgrid ) THEN
fbdataout%cgrid(jv) = fbdatain(1)%cgrid(jv)
ENDIF
END DO
DO jv = 1, fbdatain(1)%nadd
fbdataout%caddname(jv) = fbdatain(1)%caddname(jv)
END DO
DO jv = 1, fbdatain(1)%nvar
DO je = 1, fbdatain(1)%nadd
fbdataout%caddlong(je,jv) = fbdatain(1)%caddlong(je,jv)
fbdataout%caddunit(je,jv) = fbdatain(1)%caddunit(je,jv)
END DO
END DO
DO jv = 1, fbdatain(1)%next
fbdataout%cextname(jv) = fbdatain(1)%cextname(jv)
fbdataout%cextlong(jv) = fbdatain(1)%cextlong(jv)
fbdataout%cextunit(jv) = fbdatain(1)%cextunit(jv)
END DO
fbdataout%cdjuldref = fbdatain(1)%cdjuldref
! Loop over total views
DO jo = 1, fbdataout%nobs
js = iset(iind(jo))
ji = inum(iind(jo))
! Merge the header data
fbdataout%cdwmo(jo) = fbdatain(js)%cdwmo(ji)
fbdataout%cdtyp(jo) = fbdatain(js)%cdtyp(ji)
fbdataout%ioqc(jo) = fbdatain(js)%ioqc(ji)
fbdataout%ipqc(jo) = fbdatain(js)%ipqc(ji)
fbdataout%itqc(jo) = fbdatain(js)%itqc(ji)
fbdataout%plam(jo) = fbdatain(js)%plam(ji)
fbdataout%pphi(jo) = fbdatain(js)%pphi(ji)
fbdataout%ptim(jo) = fbdatain(js)%ptim(ji)
fbdataout%kindex(jo) = fbdatain(js)%kindex(ji)
DO jq = 1, fbdatain(js)%nqcf
fbdataout%ioqcf(jq,jo) = fbdatain(js)%ioqcf(jq,ji)
fbdataout%ipqcf(jq,jo) = fbdatain(js)%ipqcf(jq,ji)
fbdataout%itqcf(jq,jo) = fbdatain(js)%itqcf(jq,ji)
END DO
DO jk = 1, fbdatain(js)%nlev
fbdataout%pdep(jk,jo) = fbdatain(js)%pdep(jk,ji)
fbdataout%idqc(jk,jo) = fbdatain(js)%idqc(jk,ji)
DO jq = 1, fbdatain(js)%nqcf
fbdataout%idqcf(jq,jk,jo) = fbdatain(js)%idqcf(jq,jk,ji)
END DO
END DO
! Merge the variable data
DO jv = 1, fbdatain(js)%nvar
fbdataout%ivqc(jo,jv) = fbdatain(js)%ivqc(ji,jv)
DO jq = 1, fbdatain(js)%nqcf
fbdataout%ivqcf(jq,jo,jv) = fbdatain(js)%ivqcf(jq,ji,jv)
END DO
DO jk = 1, fbdatain(js)%nlev
fbdataout%ivlqc(jk,jo,jv) = fbdatain(js)%ivlqc(jk,ji,jv)
fbdataout%pob(jk,jo,jv) = fbdatain(js)%pob(jk,ji,jv)
DO jq = 1, fbdatain(js)%nqcf
fbdataout%ivlqcf(jq,jk,jo,jv) = &
& fbdatain(js)%ivlqcf(jq,jk,ji,jv)
END DO
END DO
END DO
! Merge grid information
IF ( fbdatain(js)%lgrid ) THEN
DO jv = 1, fbdatain(js)%nvar
fbdataout%cgrid(jv) = fbdatain(js)%cgrid(jv)
fbdataout%iproc(jo,jv) = fbdatain(js)%iproc(ji,jv)
fbdataout%iobsi(jo,jv) = fbdatain(js)%iobsi(ji,jv)
fbdataout%iobsj(jo,jv) = fbdatain(js)%iobsj(ji,jv)
DO jk = 1, fbdatain(js)%nlev
fbdataout%iobsk(jk,jo,jv) = fbdatain(js)%iobsk(jk,ji,jv)
END DO
END DO
ENDIF
! Merge additional information
DO jv = 1, fbdatain(js)%nvar
DO je = 1, fbdatain(js)%nadd
DO jk = 1, fbdatain(js)%nlev
fbdataout%padd(jk,jo,je,jv) = fbdatain(js)%padd(jk,ji,je,jv)
END DO
END DO
END DO
! Merge extra information
DO je = 1, fbdatain(js)%next
DO jk = 1, fbdatain(js)%nlev
fbdataout%pext(jk,jo,je) = fbdatain(js)%pext(jk,ji,je)
END DO
END DO
END DO
END SUBROUTINE merge_obfbdata
SUBROUTINE write_obfbdata( cdfilename, fbdata )
!!----------------------------------------------------------------------
!! *** ROUTINE write_obfbdata ***
!!
!! ** Purpose : Write an obfbdata structure into a netCDF file.
!!
!! ** Method :
!!
!! ** Action :
!!
!!----------------------------------------------------------------------
!! * Arguments
CHARACTER(len=*) :: cdfilename ! Output filename
TYPE(obfbdata) :: fbdata ! obsfbdata structure
!! * Local variables
CHARACTER(LEN=14), PARAMETER :: cpname = 'write_obfbdata'
! Dimension ids
INTEGER :: idfile
INTEGER :: idodim
INTEGER :: idldim
INTEGER :: idvdim
INTEGER :: idadim
INTEGER :: idedim
INTEGER :: idsndim
INTEGER :: idsgdim
INTEGER :: idswdim
INTEGER :: idstdim
INTEGER :: idjddim
INTEGER :: idqcdim
INTEGER :: idvard
INTEGER :: idaddd
INTEGER :: idextd
INTEGER :: idcdwmo
INTEGER :: idcdtyp
INTEGER :: idplam
INTEGER :: idpphi
INTEGER :: idpdep
INTEGER :: idptim
INTEGER :: idptimr
INTEGER :: idioqc
INTEGER :: idioqcf
INTEGER :: idipqc
INTEGER :: idipqcf
INTEGER :: iditqc
INTEGER :: iditqcf
INTEGER :: ididqc
INTEGER :: ididqcf
INTEGER :: idkindex
INTEGER, DIMENSION(fbdata%nvar) :: &
& idpob, &
& idivqc, &
& idivqcf, &
& idivlqc, &
& idivlqcf, &
& idiobsi, &
& idiobsj, &
& idiobsk, &
& idcgrid
INTEGER, DIMENSION(fbdata%nadd,fbdata%nvar) :: idpadd
INTEGER, DIMENSION(fbdata%next) :: idpext
INTEGER, DIMENSION(1) :: incdim1
INTEGER, DIMENSION(2) :: incdim2
INTEGER, DIMENSION(3) :: incdim3
INTEGER, DIMENSION(4) :: incdim4
INTEGER :: jv
INTEGER :: je
INTEGER :: ioldfill
CHARACTER(len=nf90_max_name) :: &
& cdtmp
CHARACTER(len=16), PARAMETER :: &
& cdqcconv = 'q where q =[0,9]'
CHARACTER(len=24), PARAMETER :: &
& cdqcfconv = 'NEMOVAR flag conventions'
CHARACTER(len=ilenlong) :: &
& cdltmp
! Open output filename
CALL chkerr( nf90_create( TRIM( cdfilename ), nf90_clobber, idfile ), &
& cpname, __LINE__ )
CALL chkerr( nf90_set_fill( idfile, nf90_nofill, ioldfill ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_att( idfile, nf90_global, 'title', &
& 'NEMO observation operator output' ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_att( idfile, nf90_global, 'Convention', &
& 'NEMO unified observation operator output' ),&
& cpname,__LINE__ )
! Create the dimensions
CALL chkerr( nf90_def_dim( idfile, 'N_OBS' , fbdata%nobs, idodim ), &
& cpname,__LINE__ )
CALL chkerr( nf90_def_dim( idfile, 'N_LEVELS', fbdata%nlev, idldim ), &
& cpname,__LINE__ )
CALL chkerr( nf90_def_dim( idfile, 'N_VARS', fbdata%nvar, idvdim ), &
& cpname,__LINE__ )
CALL chkerr( nf90_def_dim( idfile, 'N_QCF', fbdata%nqcf, idqcdim ),&
& cpname,__LINE__ )
IF ( fbdata%nadd > 0 ) THEN
CALL chkerr( nf90_def_dim( idfile, 'N_ENTRIES', fbdata%nadd, idadim ), &
& cpname,__LINE__ )
ENDIF
IF ( fbdata%next > 0 ) THEN
CALL chkerr( nf90_def_dim( idfile, 'N_EXTRA', fbdata%next, idedim ), &
& cpname,__LINE__ )
ENDIF
CALL chkerr( nf90_def_dim( idfile, 'STRINGNAM', ilenname, idsndim ), &
& cpname,__LINE__ )
IF (fbdata%lgrid) THEN
CALL chkerr( nf90_def_dim( idfile, 'STRINGGRID', ilengrid, idsgdim ),&
& cpname,__LINE__ )
ENDIF
CALL chkerr( nf90_def_dim( idfile, 'STRINGWMO', ilenwmo, idswdim ), &
& cpname,__LINE__ )
CALL chkerr( nf90_def_dim( idfile, 'STRINGTYP', ilentyp, idstdim ), &
& cpname,__LINE__ )
CALL chkerr( nf90_def_dim( idfile, 'STRINGJULD', ilenjuld, idjddim ), &
& cpname,__LINE__ )
! Define netCDF variables for header information
incdim2(1) = idsndim
incdim2(2) = idvdim
CALL chkerr( nf90_def_var( idfile, 'VARIABLES', nf90_char, incdim2, &
& idvard ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idvard, &
& 'List of variables in feedback files' )
IF ( fbdata%nadd > 0 ) THEN
incdim2(1) = idsndim
incdim2(2) = idadim
CALL chkerr( nf90_def_var( idfile, 'ENTRIES', nf90_char, incdim2, &
& idaddd ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idaddd, &
& 'List of additional entries for each '// &
& 'variable in feedback files' )
ENDIF
IF ( fbdata%next > 0 ) THEN
incdim2(1) = idsndim
incdim2(2) = idedim
CALL chkerr( nf90_def_var( idfile, 'EXTRA', nf90_char, incdim2, &
& idextd ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idextd, &
& 'List of extra variables' )
ENDIF
incdim2(1) = idswdim
incdim2(2) = idodim
CALL chkerr( nf90_def_var( idfile, 'STATION_IDENTIFIER', &
& nf90_char, incdim2, &
& idcdwmo ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idcdwmo, &
& 'Station identifier' )
incdim2(1) = idstdim
incdim2(2) = idodim
CALL chkerr( nf90_def_var( idfile, 'STATION_TYPE', &
& nf90_char, incdim2, &
& idcdtyp ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idcdtyp, &
& 'Code instrument type' )
incdim1(1) = idodim
CALL chkerr( nf90_def_var( idfile, 'LONGITUDE', &
& nf90_double, incdim1, &
& idplam ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idplam, &
& 'Longitude', cdunits = 'degrees_east', &
& rfillvalue = fbrmdi )
CALL chkerr( nf90_def_var( idfile, 'LATITUDE', &
& nf90_double, incdim1, &
& idpphi ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idpphi, &
& 'Latitude', cdunits = 'degrees_north', &
& rfillvalue = fbrmdi )
incdim2(1) = idldim
incdim2(2) = idodim
CALL chkerr( nf90_def_var( idfile, 'DEPTH', &
& nf90_double, incdim2, &
& idpdep ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idpdep, &
& 'Depth', cdunits = 'metre', &
& rfillvalue = fbrmdi )
incdim3(1) = idqcdim
incdim3(2) = idldim
incdim3(3) = idodim
CALL chkerr( nf90_def_var( idfile, 'DEPTH_QC', &
& nf90_int, incdim2, &
& ididqc ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, ididqc, &
& 'Quality on depth', &
& conventions = cdqcconv, &
& ifillvalue = 0 )
CALL chkerr( nf90_def_var( idfile, 'DEPTH_QC_FLAGS', &
& nf90_int, incdim3, &
& ididqcf ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, ididqcf, &
& 'Quality flags on depth', &
& conventions = cdqcfconv )
CALL chkerr( nf90_def_var( idfile, 'JULD', &
& nf90_double, incdim1, &
& idptim ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idptim, &
& 'Julian day', &
& cdunits = 'days since JULD_REFERENCE', &
& conventions = 'relative julian days with '// &
& 'decimal part (as parts of day)', &
& rfillvalue = fbrmdi )
incdim1(1) = idjddim
CALL chkerr( nf90_def_var( idfile, 'JULD_REFERENCE', &
& nf90_char, incdim1, &
& idptimr ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idptimr, &
& 'Date of reference for julian days ', &
& conventions = 'YYYYMMDDHHMMSS' )
incdim1(1) = idodim
CALL chkerr( nf90_def_var( idfile, 'OBSERVATION_QC', &
& nf90_int, incdim1, &
& idioqc ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idioqc, &
& 'Quality on observation', &
& conventions = cdqcconv, &
& ifillvalue = 0 )
incdim2(1) = idqcdim
incdim2(2) = idodim
CALL chkerr( nf90_def_var( idfile, 'OBSERVATION_QC_FLAGS', &
& nf90_int, incdim2, &
& idioqcf ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idioqcf, &
& 'Quality flags on observation', &
& conventions = cdqcfconv, &
& ifillvalue = 0 )
CALL chkerr( nf90_def_var( idfile, 'POSITION_QC', &
& nf90_int, incdim1, &
& idipqc ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idipqc, &
& 'Quality on position (latitude and longitude)', &
& conventions = cdqcconv, &
& ifillvalue = 0 )
CALL chkerr( nf90_def_var( idfile, 'POSITION_QC_FLAGS', &
& nf90_int, incdim2, &
& idipqcf ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idipqcf, &
& 'Quality flags on position', &
& conventions = cdqcfconv, &
& ifillvalue = 0 )
CALL chkerr( nf90_def_var( idfile, 'JULD_QC', &
& nf90_int, incdim1, &
& iditqc ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, iditqc, &
& 'Quality on date and time', &
& conventions = cdqcconv, &
& ifillvalue = 0 )
CALL chkerr( nf90_def_var( idfile, 'JULD_QC_FLAGS', &
& nf90_int, incdim2, &
& iditqcf ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, iditqcf, &
& 'Quality flags on date and time', &
& conventions = cdqcfconv, &
& ifillvalue = 0 )
CALL chkerr( nf90_def_var( idfile, 'ORIGINAL_FILE_INDEX', &
& nf90_int, incdim1, &
& idkindex ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idkindex, &
& 'Index in original data file', &
& ifillvalue = fbimdi )
! Define netCDF variables for individual variables
DO jv = 1, fbdata%nvar
incdim1(1) = idodim
incdim2(1) = idldim
incdim2(2) = idodim
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_OBS'
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_float, &
& incdim2, idpob(jv) ), &
& cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idpob(jv), &
& fbdata%coblong(jv), &
& cdunits = fbdata%cobunit(jv), &
& rfillvalue = fbrmdi )
IF ( fbdata%nadd > 0 ) THEN
DO je = 1, fbdata%nadd
WRITE(cdtmp,'(3A)') TRIM(fbdata%cname(jv)),'_',&
& TRIM(fbdata%caddname(je))
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_float, &
& incdim2, idpadd(je,jv) ), &
& cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idpadd(je,jv), &
& fbdata%caddlong(je,jv), &
& cdunits = fbdata%caddunit(je,jv), &
& rfillvalue = fbrmdi )
END DO
ENDIF
cdltmp = fbdata%coblong(jv)
IF (( cdltmp(1:1) >= 'A' ).AND.( cdltmp(1:1) <= 'Z' )) &
& cdltmp(1:1) = ACHAR(IACHAR(cdltmp(1:1)) + 32)
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_QC'
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_int, &
& incdim1, idivqc(jv) ), &
& cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idivqc(jv), &
& 'Quality on '//cdltmp, &
& conventions = cdqcconv, &
& ifillvalue = 0 )
incdim2(1) = idqcdim
incdim2(2) = idodim
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_QC_FLAGS'
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_int, &
& incdim2, idivqcf(jv) ), &
& cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idivqcf(jv), &
& 'Quality flags on '//cdltmp, &
& conventions = cdqcfconv, &
& ifillvalue = 0 )
incdim2(1) = idldim
incdim2(2) = idodim
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_LEVEL_QC'
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_int, &
& incdim2, idivlqc(jv) ), &
& cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idivlqc(jv), &
& 'Quality for each level on '//cdltmp, &
& conventions = cdqcconv, &
& ifillvalue = 0 )
incdim3(1) = idqcdim
incdim3(2) = idldim
incdim3(3) = idodim
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_LEVEL_QC_FLAGS'
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_int, &
& incdim3, idivlqcf(jv) ), &
& cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idivlqcf(jv), &
& 'Quality flags for each level on '//&
& cdltmp, &
& conventions = cdqcfconv, &
& ifillvalue = 0 )
IF (fbdata%lgrid) THEN
incdim2(1) = idldim
incdim2(2) = idodim
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_IOBSI'
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_int, &
& incdim1, idiobsi(jv) ), &
& cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idiobsi(jv), &
& 'ORCA grid search I coordinate')
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_IOBSJ'
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_int, &
& incdim1, idiobsj(jv) ), &
& cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idiobsj(jv), &
& 'ORCA grid search J coordinate')
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_IOBSK'
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_int, &
& incdim2, idiobsk(jv) ), &
& cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idiobsk(jv), &
& 'ORCA grid search K coordinate')
incdim1(1) = idsgdim
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_GRID'
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_char, incdim1, &
& idcgrid(jv) ), cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idcgrid(jv), &
& 'ORCA grid search grid (T,U,V)')
ENDIF
END DO
IF ( fbdata%next > 0 ) THEN
DO je = 1, fbdata%next
incdim2(1) = idldim
incdim2(2) = idodim
WRITE(cdtmp,'(A)') TRIM(fbdata%cextname(je))
CALL chkerr( nf90_def_var( idfile, cdtmp, nf90_float, &
& incdim2, idpext(je) ), &
& cpname, __LINE__ )
CALL putvaratt_obfbdata( idfile, idpext(je), &
& fbdata%cextlong(je), &
& cdunits = fbdata%cextunit(je), &
& rfillvalue = fbrmdi )
END DO
ENDIF
! Stop definitions
CALL chkerr( nf90_enddef( idfile ), cpname, __LINE__ )
! Write the variables
CALL chkerr( nf90_put_var( idfile, idvard, fbdata%cname ), &
& cpname, __LINE__ )
IF ( fbdata%nadd > 0 ) THEN
CALL chkerr( nf90_put_var( idfile, idaddd, fbdata%caddname ), &
& cpname, __LINE__ )
ENDIF
IF ( fbdata%next > 0 ) THEN
CALL chkerr( nf90_put_var( idfile, idextd, fbdata%cextname ), &
& cpname, __LINE__ )
ENDIF
CALL chkerr( nf90_put_var( idfile, idptimr, fbdata%cdjuldref ), &
& cpname, __LINE__ )
! Only write the data if observation is available
IF ( fbdata%nobs > 0 ) THEN
CALL chkerr( nf90_put_var( idfile, idcdwmo, fbdata%cdwmo ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idcdtyp, fbdata%cdtyp ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idplam, fbdata%plam ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idpphi, fbdata%pphi ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idpdep, fbdata%pdep ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idptim, fbdata%ptim ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idioqc, fbdata%ioqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idioqcf, fbdata%ioqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idipqc, fbdata%ipqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idipqcf, fbdata%ipqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, iditqc, fbdata%itqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, iditqcf, fbdata%itqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, ididqc, fbdata%idqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, ididqcf, fbdata%idqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idkindex, fbdata%kindex ), &
& cpname, __LINE__ )
DO jv = 1, fbdata%nvar
CALL chkerr( nf90_put_var( idfile, idpob(jv), fbdata%pob(:,:,jv) ), &
& cpname, __LINE__ )
IF ( fbdata%nadd > 0 ) THEN
DO je = 1, fbdata%nadd
CALL chkerr( nf90_put_var( idfile, idpadd(je,jv), &
& fbdata%padd(:,:,je,jv) ), &
& cpname, __LINE__ )
END DO
ENDIF
CALL chkerr( nf90_put_var( idfile, idivqc(jv), &
& fbdata%ivqc(:,jv) ),&
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idivqcf(jv), &
& fbdata%ivqcf(:,:,jv) ),&
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idivlqc(jv), &
& fbdata%ivlqc(:,:,jv) ),&
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idivlqcf(jv), &
& fbdata%ivlqcf(:,:,:,jv) ),&
& cpname, __LINE__ )
IF (fbdata%lgrid) THEN
CALL chkerr( nf90_put_var( idfile, idiobsi(jv), &
& fbdata%iobsi(:,jv) ),&
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idiobsj(jv), &
& fbdata%iobsj(:,jv) ),&
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idiobsk(jv), &
& fbdata%iobsk(:,:,jv) ),&
& cpname, __LINE__ )
CALL chkerr( nf90_put_var( idfile, idcgrid(jv), &
& fbdata%cgrid(jv) ), &
& cpname, __LINE__ )
ENDIF
END DO
IF ( fbdata%next > 0 ) THEN
DO je = 1, fbdata%next
CALL chkerr( nf90_put_var( idfile, idpext(je), &
& fbdata%pext(:,:,je) ), &
& cpname, __LINE__ )
END DO
ENDIF
ENDIF
! Close the file
CALL chkerr( nf90_close( idfile ), cpname, __LINE__ )
END SUBROUTINE write_obfbdata
SUBROUTINE putvaratt_obfbdata( idfile, idvar, cdlongname, cdunits, &
& conventions, cfillvalue, &
& ifillvalue, rfillvalue )
!!----------------------------------------------------------------------
!! *** ROUTINE putvaratt_obfbdata ***
!!
!! ** Purpose : Write netcdf attributes for variable
!!
!! ** Method :
!!
!! ** Action :
!!
!!----------------------------------------------------------------------
!! * Arguments
INTEGER :: idfile ! File netcdf id.
INTEGER :: idvar ! Variable netcdf id.
CHARACTER(len=*) :: cdlongname ! Long name for variable
CHARACTER(len=*), OPTIONAL :: cdunits ! Units for variable
CHARACTER(len=*), OPTIONAL :: cfillvalue ! Fill value for character variables
INTEGER, OPTIONAL :: ifillvalue ! Fill value for integer variables
REAL(kind=fbsp), OPTIONAL :: rfillvalue ! Fill value for real variables
CHARACTER(len=*), OPTIONAL :: conventions ! Conventions for variable
!! * Local variables
CHARACTER(LEN=18), PARAMETER :: &
& cpname = 'putvaratt_obfbdata'
CALL chkerr( nf90_put_att( idfile, idvar, 'long_name', &
& TRIM(cdlongname) ), &
& cpname, __LINE__ )
IF ( PRESENT(cdunits) ) THEN
CALL chkerr( nf90_put_att( idfile, idvar, 'units', &
& TRIM(cdunits) ), &
& cpname, __LINE__ )
ENDIF
IF ( PRESENT(conventions) ) THEN
CALL chkerr( nf90_put_att( idfile, idvar, 'Conventions', &
& TRIM(conventions) ), &
& cpname, __LINE__ )
ENDIF
IF ( PRESENT(cfillvalue) ) THEN
CALL chkerr( nf90_put_att( idfile, idvar, '_Fillvalue', &
& TRIM(cfillvalue) ), &
& cpname, __LINE__ )
ENDIF
IF ( PRESENT(ifillvalue) ) THEN
CALL chkerr( nf90_put_att( idfile, idvar, '_Fillvalue', &
& ifillvalue ), &
& cpname, __LINE__ )
ENDIF
IF ( PRESENT(rfillvalue) ) THEN
CALL chkerr( nf90_put_att( idfile, idvar, '_Fillvalue', &
& rfillvalue ), &
& cpname, __LINE__ )
ENDIF
END SUBROUTINE putvaratt_obfbdata
SUBROUTINE read_obfbdata( cdfilename, fbdata, ldgrid )
!!----------------------------------------------------------------------
!! *** ROUTINE read_obfbdata ***
!!
!! ** Purpose : Read an obfbdata structure from a netCDF file.
!!
!! ** Method :
!!
!! ** Action :
!!
!!----------------------------------------------------------------------
!! * Arguments
CHARACTER(len=*) :: cdfilename ! Input filename
TYPE(obfbdata) :: fbdata ! obsfbdata structure
LOGICAL, OPTIONAL :: ldgrid ! Allow forcing of grid info
!! * Local variables
CHARACTER(LEN=14), PARAMETER :: cpname = 'read_obfbdata'
INTEGER :: idfile
INTEGER :: idodim
INTEGER :: idldim
INTEGER :: idvdim
INTEGER :: idadim
INTEGER :: idedim
INTEGER :: idgdim
INTEGER :: idvard
INTEGER :: idaddd
INTEGER :: idextd
INTEGER :: idcdwmo
INTEGER :: idcdtyp
INTEGER :: idplam
INTEGER :: idpphi
INTEGER :: idpdep
INTEGER :: idptim
INTEGER :: idptimr
INTEGER :: idioqc
INTEGER :: idioqcf
INTEGER :: idipqc
INTEGER :: idipqcf
INTEGER :: ididqc
INTEGER :: ididqcf
INTEGER :: iditqc
INTEGER :: iditqcf
INTEGER :: idkindex
INTEGER, DIMENSION(:), ALLOCATABLE :: &
& idpob, &
& idivqc, &
& idivqcf, &
& idivlqc, &
& idivlqcf, &
& idiobsi, &
& idiobsj, &
& idiobsk, &
& idcgrid, &
& idpext
INTEGER, DIMENSION(:,:), ALLOCATABLE :: &
& idpadd
INTEGER :: jv
INTEGER :: je
INTEGER :: nvar
INTEGER :: nobs
INTEGER :: nlev
INTEGER :: nadd
INTEGER :: next
LOGICAL :: lgrid
CHARACTER(len=NF90_MAX_NAME) :: cdtmp
! Check allocation status and deallocate previous allocated structures
IF ( fbdata%lalloc ) THEN
CALL dealloc_obfbdata( fbdata )
ENDIF
! Open input filename
CALL chkerr( nf90_open( TRIM( cdfilename ), nf90_nowrite, idfile ), &
& cpname, __LINE__ )
! Get input dimensions
CALL chkerr( nf90_inq_dimid( idfile, 'N_OBS' , idodim ), &
& cpname,__LINE__ )
CALL chkerr( nf90_inquire_dimension( idfile, idodim, len=nobs ), &
& cpname,__LINE__ )
CALL chkerr( nf90_inq_dimid( idfile, 'N_LEVELS', idldim ), &
& cpname,__LINE__ )
CALL chkerr( nf90_inquire_dimension( idfile, idldim, len=nlev ), &
& cpname,__LINE__ )
CALL chkerr( nf90_inq_dimid( idfile, 'N_VARS', idvdim ), &
& cpname,__LINE__ )
CALL chkerr( nf90_inquire_dimension( idfile, idvdim, len=nvar ), &
& cpname,__LINE__ )
IF ( nf90_inq_dimid( idfile, 'N_ENTRIES', idadim ) == 0 ) THEN
CALL chkerr( nf90_inquire_dimension( idfile, idadim, len=nadd ), &
& cpname,__LINE__ )
ELSE
nadd = 0
ENDIF
IF ( nf90_inq_dimid( idfile, 'N_EXTRA', idedim ) == 0 ) THEN
CALL chkerr( nf90_inquire_dimension( idfile, idedim, len=next ), &
& cpname,__LINE__ )
ELSE
next = 0
ENDIF
!
! Check if this input file contains grid search informations
!
lgrid = ( nf90_inq_dimid( idfile, 'STRINGGRID', idgdim ) == 0 )
! Allocate data structure
IF ( PRESENT(ldgrid) ) THEN
CALL alloc_obfbdata( fbdata, nvar, nobs, nlev, nadd, next, &
& lgrid.OR.ldgrid )
ELSE
CALL alloc_obfbdata( fbdata, nvar, nobs, nlev, nadd, next, &
& lgrid )
ENDIF
! Allocate netcdf identifiers
ALLOCATE( &
& idpob(fbdata%nvar), &
& idivqc(fbdata%nvar), &
& idivqcf(fbdata%nvar), &
& idivlqc(fbdata%nvar), &
& idivlqcf(fbdata%nvar), &
& idiobsi(fbdata%nvar), &
& idiobsj(fbdata%nvar), &
& idiobsk(fbdata%nvar), &
& idcgrid(fbdata%nvar) &
& )
IF ( fbdata%nadd > 0 ) THEN
ALLOCATE( &
& idpadd(fbdata%nadd,fbdata%nvar) &
& )
ENDIF
IF ( fbdata%next > 0 ) THEN
ALLOCATE( &
& idpext(fbdata%next) &
& )
ENDIF
! Read variables for header information
CALL chkerr( nf90_inq_varid( idfile, 'VARIABLES',idvard ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idvard, fbdata%cname ), &
& cpname, __LINE__ )
IF ( fbdata%nadd > 0 ) THEN
CALL chkerr( nf90_inq_varid( idfile, 'ENTRIES', idaddd ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idaddd, fbdata%caddname ), &
& cpname, __LINE__ )
ENDIF
IF ( fbdata%next > 0 ) THEN
CALL chkerr( nf90_inq_varid( idfile, 'EXTRA', idextd ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idextd, fbdata%cextname ), &
& cpname, __LINE__ )
ENDIF
CALL chkerr( nf90_inq_varid( idfile, 'JULD_REFERENCE', idptimr ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idptimr, fbdata%cdjuldref ), &
& cpname, __LINE__ )
IF ( fbdata%nobs > 0 ) THEN
CALL chkerr( nf90_inq_varid( idfile, 'STATION_IDENTIFIER', idcdwmo ),&
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idcdwmo, fbdata%cdwmo ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'STATION_TYPE', idcdtyp ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idcdtyp, fbdata%cdtyp), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'LONGITUDE', idplam ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idplam, fbdata%plam ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'LATITUDE', idpphi ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idpphi, fbdata%pphi ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'DEPTH', idpdep ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idpdep, fbdata%pdep ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'JULD', idptim ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idptim, fbdata%ptim ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'OBSERVATION_QC', idioqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idioqc, fbdata%ioqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'OBSERVATION_QC_FLAGS', idioqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idioqcf, fbdata%ioqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'POSITION_QC', idipqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idipqc, fbdata%ipqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'POSITION_QC_FLAGS', idipqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idipqcf, fbdata%ipqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'DEPTH_QC', ididqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, ididqc, fbdata%idqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'DEPTH_QC_FLAGS', ididqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, ididqcf, fbdata%idqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'JULD_QC', iditqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, iditqc, fbdata%itqc ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'JULD_QC_FLAGS', iditqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, iditqcf, fbdata%itqcf ), &
& cpname, __LINE__ )
CALL chkerr( nf90_inq_varid( idfile, 'ORIGINAL_FILE_INDEX', idkindex ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idkindex, fbdata%kindex ), &
& cpname, __LINE__ )
! Read netCDF variables for individual variables
DO jv = 1, fbdata%nvar
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_OBS'
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idpob(jv) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idpob(jv), &
& fbdata%pob(:,:,jv) ), &
& cpname, __LINE__ )
CALL getvaratt_obfbdata( idfile, idpob(jv), &
& fbdata%coblong(jv), &
& fbdata%cobunit(jv) )
IF ( fbdata%nadd > 0 ) THEN
DO je = 1, fbdata%nadd
WRITE(cdtmp,'(3A)') TRIM(fbdata%cname(jv)),'_',&
& TRIM(fbdata%caddname(je))
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idpadd(je,jv) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idpadd(je,jv), &
& fbdata%padd(:,:,je,jv) ), &
& cpname, __LINE__ )
CALL getvaratt_obfbdata( idfile, idpadd(je,jv), &
& fbdata%caddlong(je,jv), &
& fbdata%caddunit(je,jv) )
END DO
ENDIF
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_QC'
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idivqc(jv) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idivqc(jv), &
& fbdata%ivqc(:,jv) ), &
& cpname, __LINE__ )
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_QC_FLAGS'
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idivqcf(jv) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idivqcf(jv), &
& fbdata%ivqcf(:,:,jv) ), &
& cpname, __LINE__ )
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_LEVEL_QC'
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idivlqc(jv) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idivlqc(jv), &
& fbdata%ivlqc(:,:,jv) ), &
& cpname, __LINE__ )
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_LEVEL_QC_FLAGS'
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idivlqcf(jv) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idivlqcf(jv), &
& fbdata%ivlqcf(:,:,:,jv) ), &
& cpname, __LINE__ )
IF ( lgrid ) THEN
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_IOBSI'
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idiobsi(jv) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idiobsi(jv), &
& fbdata%iobsi(:,jv) ), &
& cpname, __LINE__ )
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_IOBSJ'
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idiobsj(jv) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idiobsj(jv), &
& fbdata%iobsj(:,jv) ), &
& cpname, __LINE__ )
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_IOBSK'
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idiobsk(jv) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idiobsk(jv), &
& fbdata%iobsk(:,:,jv) ), &
& cpname, __LINE__ )
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_GRID'
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idcgrid(jv) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idcgrid(jv), &
& fbdata%cgrid(jv) ), &
& cpname, __LINE__ )
ENDIF
END DO
IF ( fbdata%next > 0 ) THEN
DO je = 1, fbdata%next
WRITE(cdtmp,'(A)') TRIM(fbdata%cextname(je))
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idpext(je) ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_var( idfile, idpext(je), &
& fbdata%pext(:,:,je) ), &
& cpname, __LINE__ )
CALL getvaratt_obfbdata( idfile, idpext(je), &
& fbdata%cextlong(je), &
& fbdata%cextunit(je) )
END DO
ENDIF
ELSE ! if no observations only get attributes
DO jv = 1, fbdata%nvar
WRITE(cdtmp,'(2A)') TRIM(fbdata%cname(jv)),'_OBS'
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idpob(jv) ), &
& cpname, __LINE__ )
CALL getvaratt_obfbdata( idfile, idpob(jv), &
& fbdata%coblong(jv), &
& fbdata%cobunit(jv) )
IF ( fbdata%nadd > 0 ) THEN
DO je = 1, fbdata%nadd
WRITE(cdtmp,'(3A)') TRIM(fbdata%cname(jv)),'_',&
& TRIM(fbdata%caddname(je))
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idpadd(je,jv) ), &
& cpname, __LINE__ )
CALL getvaratt_obfbdata( idfile, idpadd(je,jv), &
& fbdata%caddlong(je,jv), &
& fbdata%caddunit(je,jv) )
END DO
ENDIF
END DO
IF ( fbdata%next > 0 ) THEN
DO je = 1, fbdata%next
WRITE(cdtmp,'(A)') TRIM(fbdata%cextname(je))
CALL chkerr( nf90_inq_varid( idfile, cdtmp, idpext(je) ), &
& cpname, __LINE__ )
CALL getvaratt_obfbdata( idfile, idpext(je), &
& fbdata%cextlong(je), &
& fbdata%cextunit(je) )
END DO
ENDIF
ENDIF
! Close the file
CALL chkerr( nf90_close( idfile ), cpname, __LINE__ )
END SUBROUTINE read_obfbdata
SUBROUTINE getvaratt_obfbdata( idfile, idvar, cdlongname, cdunits )
!!----------------------------------------------------------------------
!! *** ROUTINE putvaratt_obfbdata ***
!!
!! ** Purpose : Read netcdf attributes for variable
!!
!! ** Method :
!!
!! ** Action :
!!
!!----------------------------------------------------------------------
!! * Arguments
INTEGER :: idfile ! File netcdf id.
INTEGER :: idvar ! Variable netcdf id.
CHARACTER(len=*) :: cdlongname ! Long name for variable
CHARACTER(len=*) :: cdunits ! Units for variable
!! * Local variables
CHARACTER(LEN=18), PARAMETER :: cpname = 'getvaratt_obfbdata'
CALL chkerr( nf90_get_att( idfile, idvar, 'long_name', &
& cdlongname ), &
& cpname, __LINE__ )
CALL chkerr( nf90_get_att( idfile, idvar, 'units', &
& cdunits ), &
& cpname, __LINE__ )
END SUBROUTINE getvaratt_obfbdata
END MODULE obs_fbm