job_run_CPL_TESTCASE

#!/usr/bin/env bash

###################################
## Definitions for batch system
#SBATCH -A omr@cpu                 # Accounting information
#SBATCH --job-name=CPL_TESTCASE    # Job name
##SBATCH --partition=cpu_p1        # Partition Name
#SBATCH --ntasks=29                # Total number of MPI processes
#SBATCH --ntasks-per-node=40       # Number of MPI processes per node
#SBATCH --hint=nomultithread       # 1  MPI process per node  (no hyperthreading)
#SBATCH --time=00:10:00            # Maximum execution time (HH:MM:SS)
#SBATCH --output=cpltestcase_%j    # Name of output listing file
#SBATCH --error=cpltestcase_%j     # Name of error listing file (the same)
###################################
set -x
ulimit -s unlimited
##
## CONFIG_DIR is submission directory
##
CONFIG_DIR=${SLURM_SUBMIT_DIR:-$(pwd)}
#
cd ${CONFIG_DIR}
pwd
##
## Define and create execution directory and move there
##
XXD=`date +%F%H%M%S`
echo " XXD " $XXD
mkdir -p $WORK/OUT/CPLTESTCASE/$XXD
cd $WORK/OUT/CPLTESTCASE/$XXD
echo "RUN directory " `pwd`
##
## Get input files for NEMO
##
DATA1DIR=$WORK/FORCING/ORCA2_ICE_PISCES_v4.0
for file in $DATA1DIR/* 
do
ln -s $file . || exit 2
done
# Get input namelist  and xml files
for file in $CONFIG_DIR/*namelist*_ref $CONFIG_DIR/*namelist*_cfg $CONFIG_DIR/*.xml
do
    cp $file . || exit 3
done
##
## Get input files for TOYATM, including the namcouple file
##
TOYATM_DIR=$CONFIG_DIR/../../../tools/TOYATM/EXP
for file in $TOYATM_DIR/*
do
    cp $file . || exit 4
done
##
## Get Executables
##
cp $CONFIG_DIR/nemo nemo.exe  || exit 5
cp $TOYATM_DIR/toyatm.exe . || exit 5
cp $XIOS_DIR/bin/xios_server.exe . || exit 5
##
## Get script generating summary report
cp $CONFIG_DIR/gen_report.sh .

echo "DIR BEFORE EXEC"
ls -l
echo '(3) Prepare launch of the run'
echo '----------------'
export MPIRUN="srun --mpi=pmi2 --cpu-bind=cores -K1"
NB_PROCS_NEMO=28
NB_PROCS_TOYATM=1
NB_PROCS_XIOS=1
date  
touch ./run_file
echo 0-27 ./nemo.exe >>./run_file
echo 28 ./toyatm.exe >>./run_file
echo 29 ./xios_server.exe >>./run_file
echo run_file
cat ./run_file
##
## Run the CPL test case using 27 processes for nemo and 1 for toyatm
##
echo '(4) Run the code'
echo '----------------'
time srun --multi-prog ./run_file
echo "DIR AFTER EXEC"
ls -l
date
pwd
##
## simple report generator for the test case
##
./gen_report.sh | tee CPL_OASIS_results


cat CPL_OASIS_results
## Copy Summary of results back into submission directory
cp CPL_OASIS_results ${CONFIG_DIR}