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#!/usr/bin/env bash
#SBATCH -J sette
#SBATCH -o sette.%j.out
#SBATCH -e sette.%j.err
#SBATCH --export=ALL
#SBATCH --parsable
#SBATCH --exclusive
#SBATCH -N 1
#SBATCH -p normal256
#SBATCH --time=01:00:00
##SBATCH --time=00:15:00
Guillaume Samson
committed
##SBATCH -A smer
#SBATCH -A cmems
Guillaume Samson
committed
##SBATCH --qos=normal
#SBATCH --qos=coper
# Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these
# (via sed operating on this template job file).
#
echo " ";
OCORES=NPROCS
XCORES=NXIOPROCS
O_PER_NODE=32
X_PER_NODE=8
if [ $XCORES -le $X_PER_NODE ]; then X_PER_NODE=$XCORES; fi
if [ $OCORES -le $O_PER_NODE ]; then O_PER_NODE=$OCORES; fi
export SETTE_DIR=DEF_SETTE_DIR
###############################################################
#
#
# load sette functions (only post_test_tidyup needed)
#
. ${SETTE_DIR}/all_functions.sh
###############################################################
#
# modules to load
module purge
module use /home/ext/mr/smer/samsong/modules
module load gcc/9.2.0 intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2 xios/trunk/rev2320-impi
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export XIO_HOME=${XIOS_DIR}
# Don't remove neither change the following line
# BODY
#
# Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these
# (via sed operating on this template job file). Note that the number of compute nodes required
# is also set by the fcm_job.sh on the PBS select header line above.
#
# These variables are needed by post_test_tidyup function in all_functions.sh
#
export INPUT_DIR=DEF_INPUT_DIR
export CONFIG_DIR=DEF_CONFIG_DIR
export TOOLS_DIR=DEF_TOOLS_DIR
export NEMO_VALIDATION_DIR=DEF_NEMO_VALIDATION
export NEW_CONF=DEF_NEW_CONF
export CMP_NAM=DEF_CMP_NAM
export TEST_NAME=DEF_TEST_NAME
export EXE_DIR=DEF_EXE_DIR
ulimit -a
ulimit -s unlimited
#
# end of set up
###############################################################
#
# change to the working directory
#
cd $EXE_DIR
echo Running on host `hostname`
echo Time is `date`
echo Directory is `pwd`
if [ $XCORES -gt 0 ]; then
#
# Run MPMD case
#
#XIOS will run on a separate node so will run in parallel queue
if [ ! -f ./xios_server.exe ] && [ -f ${XIO_HOME}/bin/xios_server.exe ]; then
cp ${XIO_HOME}/bin/xios_server.exe .
fi
if [ ! -f ./xios_server.exe ]; then
echo "./xios_server.exe not found"
echo "run aborted"
exit
fi
# cat > mpmd.conf <<EOF
#0-$((OCORES-1)) ./nemo
#${OCORES}-39 ./xios_server.exe
#EOF
cat > mpmd.conf <<EOF
-n ${OCORES} ./nemo
-n ${XCORES} ./xios_server.exe
EOF
# echo time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n 40 --multi-prog ./mpmd.conf
# time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n 40 --multi-prog ./mpmd.conf
echo time mpiexec.hydra -configfile ./mpmd.conf
time mpiexec.hydra -configfile ./mpmd.conf
#
else
#
# Run SPMD case
#
# echo time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n ${OCORES} ./nemo
# time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n ${OCORES} ./nemo
echo time mpiexec.hydra -n ${OCORES} ./nemo
time mpiexec.hydra -n ${OCORES} ./nemo
fi
#
#
post_test_tidyup
# END_BODY
# Don't remove neither change the previous line
exit