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#!/bin/bash
############################################################
# Author : Italo Epicoco - CMCC
# Contact: italo.epicoco@unisalento.it
# 2014 : A.C. Coward added new namelist settings for GYRE configuration
#
# sette_xios.sh : additional script of SET TEsts for XIOS within NEMO
# ----------------------------------------------------------------------
# NEMO/SETTE , NEMO Consortium (2014)
# Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
# ----------------------------------------------------------------------
#
#############################################################
#set -x
set -o posix
#set -u
#set -e
# ===========
# DESCRIPTION
# ===========
#
# Variables to be checked by user:
#
# COMPILER : name of compiler as defined in NEMOGCM/ARCH directory
# BATCH_COMMAND_PAR : name of the command for submitting parallel batch jobs
# BATCH_COMMAND_SEQ : name of the command for submitting sequential batch jobs
# INTERACT_FLAG : flag to run in interactive mode "yes"
# to run in batch mode "no"
# MPIRUN_FLAG : flag to run in parallel (MPI) "yes"
# to run in sequential mode (NB_PROC = 1) "no"
# USING_MPMD : flag to control the use of stand-alone IO servers
# "true" to run in MPMD (detached) mode with stand-alone IO servers
# "false" to run in SPMD (attached) mode without separate IO servers
# NUM_XIOSERVERS : number of stand-alone IO servers to employ
# set to zero if USING_MPMD="false"
#
# Principal script is sette_xios.sh, that calls
#
# makenemo : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
# and links to nemo in ${CONFIG_NAME}/EXP00)
#
# param.cfg : sets and loads following directories:
#
# FORCING_DIR : is the directory for forcing files (tarfile)
# INPUT_DIR : is the directory for input files storing
# TMPDIR : is the temporary directory (if needed)
# NEMO_VALIDATION_DIR : is the validation directory
#
# (NOTE: this file is the same for all configrations to be tested with sette)
#
# all_functions.sh : loads functions used by sette (note: new functions can be added here)
# set_namelist : function declared in all_functions that sets namelist parameters
# post_test_tidyup : creates validation storage directory and copies required output files
# (run.stat and ocean.output) in it after execution of test.
#
# VALIDATION tree is:
#
# NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
#
# prepare_exe_dir.sh : defines and creates directory where the test is executed
# execution directory takes name of TEST_NAME defined for every test
# in sette.sh. (each test in executed in its own directory)
#
# prepare_job.sh : to generate the script run_job.sh
#
# fcm_job.sh : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
# see sette.sh and BATCH_TEMPLATE directory
#
# NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
# can be found paths to the input tar file)
# NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
# directory
# NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
# remain in ${NEW_CONF}/EXP00
#
# NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
# executed commands
#
# NOTE: if sette_xios.sh is stopped in output.sette there is written the last command
# executed by sette_xios.sh
#
# example use: ./sette_xios.sh
#########################################################################################
#
# Compiler among those in NEMOGCM/ARCH
COMPILER=
export BATCH_COMMAND_PAR="llsubmit"
export BATCH_COMMAND_SEQ=$BATCH_COMMAND_PAR
export INTERACT_FLAG="no"
export MPIRUN_FLAG="yes"
#
# Directory to run the tests
SETTE_DIR=$(cd $(dirname "$0"); pwd)
MAIN_DIR=${SETTE_DIR%/SETTE}
CONFIG_DIR=${MAIN_DIR}/cfgs
TOOLS_DIR=${MAIN_DIR}/tools
CMP_NAM=${1:-$COMPILER}
#
#=================================================================================
# Copy job_batch_COMPILER file for specific compiler into job_batch_template
# Note this batch template needs to be capable of launching both SPMD and MPMD
# tasks with internal selection depending on the value of NUM_XIOSERVERS
# (0=SPMD; >0 = MPMD)
#=================================================================================
#
cd ${SETTE_DIR}
cp BATCH_TEMPLATE/batch-${COMPILER} job_batch_template || exit
for config in 1 2
do
#==========================================================
# TESTS FOR XIOS USING GYRE CONFIGURATION AT LOW RESOLUTION
#==========================================================
if [ ${config} -eq 1 ] ; then
## Test of XIOS configured in attached mode with multiple output files (one for each process).
## $NPROC processes are used
NPROC=4
jp_cfg=1
jpni=2
jpnj=2
export NUM_XIOSERVERS=0
export USING_MPMD="false"
export TEST_NAME="ATTACHED_MULTIPLE"
cd ${SETTE_DIR}
. ../cfgs/makenemo -m ${CMP_NAM} -n GYRE_XIOS_LR -r GYRE_XIOS -j 8
cd ${SETTE_DIR}
. ./param.cfg
. ./all_functions.sh
. ./prepare_exe_dir.sh
JOB_FILE=${EXE_DIR}/run_job.sh
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYRE_XIOS_LR\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend 120
set_namelist namelist_cfg nn_stock 120
set_namelist namelist_cfg ln_clobber .true.
set_namelist namelist_cfg jp_cfg $jp_cfg
set_namelist namelist_cfg jpidta $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjdta $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpiglo $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjglo $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpni $jpni
set_namelist namelist_cfg jpnj $jpnj
set_namelist namelist_cfg jpnij $NPROC
set_xio_using_server iodef.xml $USING_MPMD
set_xio_file_type iodef.xml multiple_file
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
## Test of XIOS configured in attached mode with a single output file.
export TEST_NAME="ATTACHED_ONE"
export NUM_XIOSERVERS=0
export USING_MPMD="false"
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
JOB_FILE=${EXE_DIR}/run_job.sh
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYRE_XIOS_LR\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend 120
set_namelist namelist_cfg nn_stock 120
set_namelist namelist_cfg ln_clobber .true.
set_namelist namelist_cfg jp_cfg $jp_cfg
set_namelist namelist_cfg jpidta $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjdta $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpiglo $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjglo $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpni $jpni
set_namelist namelist_cfg jpnj $jpnj
set_namelist namelist_cfg jpnij $NPROC
set_xio_using_server iodef.xml $USING_MPMD
set_xio_file_type iodef.xml one_file
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
## Test of XIOS configured in detached mode with a single output file.
## $NUM_XIOSERVERS IO server are used.
## the total number of allocated cores is $NUM_XIOSERVERS + $NPROC
export TEST_NAME="DETACHED_ONE"
export NUM_XIOSERVERS=2
export USING_MPMD="true"
cd ${SETTE_DIR}
#
. ./prepare_exe_dir.sh
JOB_FILE=${EXE_DIR}/run_job.sh
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYRE_XIOS_LR\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend 120
set_namelist namelist_cfg nn_stock 120
set_namelist namelist_cfg ln_clobber .true.
set_namelist namelist_cfg jp_cfg $jp_cfg
set_namelist namelist_cfg jpidta $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjdta $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpiglo $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjglo $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpni $jpni
set_namelist namelist_cfg jpnj $jpnj
set_namelist namelist_cfg jpnij $NPROC
set_xio_using_server iodef.xml $USING_MPMD
set_xio_file_type iodef.xml one_file
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
## Test of XIOS configured in detached mode with multiple output files (one for each IO server).
## $NUM_XIOSERVERS IO server are used.
## the total number of allocated cores is $NUM_XIOSERVERS + $NPROC
export TEST_NAME="DETACHED_MULTIPLE"
export NUM_XIOSERVERS=2
export USING_MPMD="true"
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
JOB_FILE=${EXE_DIR}/run_job.sh
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYRE_XIOS_LR\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend 120
set_namelist namelist_cfg nn_stock 120
set_namelist namelist_cfg ln_clobber .true.
set_namelist namelist_cfg jp_cfg $jp_cfg
set_namelist namelist_cfg jpidta $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjdta $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpiglo $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjglo $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpni $jpni
set_namelist namelist_cfg jpnj $jpnj
set_namelist namelist_cfg jpnij $NPROC
set_xio_using_server iodef.xml $USING_MPMD
set_xio_file_type iodef.xml multiple_file
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
#==========================================================
# TESTS FOR XIOS USING GYRE CONFIGURATION AT HIGH RESOLUTION
#==========================================================
if [ ${config} -eq 2 ] ; then
## Test of XIOS configured in attached mode with multiple output files (one for each process).
## $NPROC processes are used
NPROC=64
jp_cfg=30
jpni=8
jpnj=8
export NUM_XIOSERVERS=0
export USING_MPMD="false"
export TEST_NAME="ATTACHED_MULTIPLE"
cd ${SETTE_DIR}
. ../cfgs/makenemo -m ${CMP_NAM} -n GYRE_XIOS_HR -r GYRE_XIOS -j 8
cd ${SETTE_DIR}
#
. ./param.cfg
. ./all_functions.sh
. ./prepare_exe_dir.sh
#
JOB_FILE=${EXE_DIR}/run_job.sh
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYRE_XIOS_HR\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend 120
set_namelist namelist_cfg nn_stock 120
set_namelist namelist_cfg nn_bench 1
set_namelist namelist_cfg ln_clobber .true.
set_namelist namelist_cfg jp_cfg $jp_cfg
set_namelist namelist_cfg jpidta $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjdta $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpiglo $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjglo $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpni $jpni
set_namelist namelist_cfg jpnj $jpnj
set_namelist namelist_cfg jpnij $NPROC
set_xio_using_server iodef.xml $USING_MPMD
set_xio_file_type iodef.xml multiple_file
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
## Test of XIOS configured in attached mode with a single output file.
export TEST_NAME="ATTACHED_ONE"
export NUM_XIOSERVERS=0
export USING_MPMD="false"
cd ${SETTE_DIR}
#
. ./prepare_exe_dir.sh
#
JOB_FILE=${EXE_DIR}/run_job.sh
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYRE_XIOS_HR\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend 120
set_namelist namelist_cfg nn_stock 120
set_namelist namelist_cfg nn_bench 1
set_namelist namelist_cfg ln_clobber .true.
set_namelist namelist_cfg jp_cfg $jp_cfg
set_namelist namelist_cfg jpidta $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjdta $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpiglo $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjglo $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpni $jpni
set_namelist namelist_cfg jpnj $jpnj
set_namelist namelist_cfg jpnij $NPROC
set_xio_using_server iodef.xml $USING_MPMD
set_xio_file_type iodef.xml one_file
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
## Test of XIOS configured in detached mode with a single output file.
## $NUM_XIOSERVERS IO server are used.
## the total number of allocated cores is $NUM_XIOSERVERS + $NPROC
export TEST_NAME="DETACHED_ONE"
export NUM_XIOSERVERS=8
export USING_MPMD="true"
cd ${SETTE_DIR}
#
. ./prepare_exe_dir.sh
#
JOB_FILE=${EXE_DIR}/run_job.sh
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYRE_XIOS_HR\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend 120
set_namelist namelist_cfg nn_stock 120
set_namelist namelist_cfg nn_bench 1
set_namelist namelist_cfg ln_clobber .true.
set_namelist namelist_cfg jp_cfg $jp_cfg
set_namelist namelist_cfg jpidta $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjdta $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpiglo $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjglo $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpni $jpni
set_namelist namelist_cfg jpnj $jpnj
set_namelist namelist_cfg jpnij $NPROC
set_xio_using_server iodef.xml $USING_MPMD
set_xio_file_type iodef.xml one_file
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
## Test of XIOS configured in detached mode with multiple output files (one for each IO server).
## $NUM_XIOSERVERS IO server are used.
## the total number of allocated cores is $NUM_XIOSERVERS + $NPROC
export TEST_NAME="DETACHED_MULTIPLE"
export NUM_XIOSERVERS=8
export USING_MPMD="true"
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
JOB_FILE=${EXE_DIR}/run_job.sh
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYRE_XIOS_HR\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend 120
set_namelist namelist_cfg nn_stock 120
set_namelist namelist_cfg nn_bench 1
set_namelist namelist_cfg ln_clobber .true.
set_namelist namelist_cfg jp_cfg $jp_cfg
set_namelist namelist_cfg jpidta $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjdta $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpiglo $(( $jp_cfg * 30 + 2 ))
set_namelist namelist_cfg jpjglo $(( $jp_cfg * 20 + 2 ))
set_namelist namelist_cfg jpni $jpni
set_namelist namelist_cfg jpnj $jpnj
set_namelist namelist_cfg jpnij $NPROC
set_xio_using_server iodef.xml $USING_MPMD
set_xio_file_type iodef.xml multiple_file
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
done