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Commit 119e1ac9 authored by Nicolas Martin's avatar Nicolas Martin :speech_balloon:
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Update namelists folder according to last manual edits (2)

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doc/namelists/nam_trc_age deleted 100644 → 0
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! Variable setting
ctrcnm (jp_age) = 'Age'
ctrcln (jp_age) = 'Sea water age since surface contact'
ctrcun (jp_age) = 'year'
ln_trc_ini(jp_age) = .false.
ln_trc_sbc(jp_age) = .false.
ln_trc_cbc(jp_age) = .false.
ln_trc_obc(jp_age) = .false.
doc/namelists/namagrif
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......@@ -4,7 +4,7 @@
ln_agrif_2way = .true. ! activate two way nesting
ln_init_chfrpar = .false. ! initialize child grids from parent
ln_vert_remap = .false. ! use vertical remapping
ln_spc_dyn = .true. ! use 0 as special value for dynamics
ln_spc_dyn = .false. ! use 0 as special value for dynamics
ln_chk_bathy = .true. ! =T check the parent bathymetry
rn_sponge_tra = 0.002 ! coefficient for tracer sponge layer []
rn_sponge_dyn = 0.002 ! coefficient for dynamics sponge layer []
......
doc/namelists/namdta_dyn_linssh deleted 100644 → 0
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!-----------------------------------------------------------------------
&namdta_dyn ! offline ocean input files (OFF_SRC only)
!-----------------------------------------------------------------------
cn_dir = './' ! root directory for the ocean data location
!___________!_________________________!___________________!___________!_____________!________!___________!
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' !
sn_tem = 'dyna_grid_T' , 120. , 'votemper' , .true. , .true. , 'yearly'
sn_sal = 'dyna_grid_T' , 120. , 'vosaline' , .true. , .true. , 'yearly'
sn_mld = 'dyna_grid_T' , 120. , 'somixhgt' , .true. , .true. , 'yearly'
sn_emp = 'dyna_grid_T' , 120. , 'sowaflup' , .true. , .true. , 'yearly'
sn_fmf = 'dyna_grid_T' , 120. , 'iowaflup' , .true. , .true. , 'yearly'
sn_ice = 'dyna_grid_T' , 120. , 'soicecov' , .true. , .true. , 'yearly'
sn_qsr = 'dyna_grid_T' , 120. , 'soshfldo' , .true. , .true. , 'yearly'
sn_wnd = 'dyna_grid_T' , 120. , 'sowindsp' , .true. , .true. , 'yearly'
sn_uwd = 'dyna_grid_U' , 120. , 'uocetr_eff', .true. , .true. , 'yearly'
sn_vwd = 'dyna_grid_V' , 120. , 'vocetr_eff', .true. , .true. , 'yearly'
sn_wwd = 'dyna_grid_W' , 120. , 'wocetr_eff', .true. , .true. , 'yearly'
sn_avt = 'dyna_grid_W' , 120. , 'voddmavs' , .true. , .true. , 'yearly'
sn_ubl = 'dyna_grid_U' , 120. , 'sobblcox' , .true. , .true. , 'yearly'
sn_vbl = 'dyna_grid_V' , 120. , 'sobblcoy' , .true. , .true. , 'yearly'
/
doc/namelists/namdta_dyn_nolinssh deleted 100644 → 0
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!-----------------------------------------------------------------------
&namdta_dyn ! offline ocean input files (OFF_SRC only)
!-----------------------------------------------------------------------
ln_dynrnf = .true. ! runoffs option enabled (T) or not (F)
ln_dynrnf_depth = .false. ! runoffs is spread in vertical (T) or not (F)
!
cn_dir = './' ! root directory for the ocean data location
!___________!_________________________!___________________!_____________!_____________!________!___________!
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' !
sn_tem = 'dyna_grid_T' , 120. , 'thetao' , .true. , .true. , 'yearly'
sn_sal = 'dyna_grid_T' , 120. , 'so' , .true. , .true. , 'yearly'
sn_div = 'dyna_grid_T' , 120. , 'hdivtr' , .true. , .true. , 'yearly'
sn_mld = 'dyna_grid_T' , 120. , 'mldr10_1' , .true. , .true. , 'yearly'
sn_emp = 'dyna_grid_T' , 120. , 'wfo' , .true. , .true. , 'yearly'
sn_empb = 'dyna_grid_T' , 120. , 'wfob' , .true. , .true. , 'yearly'
sn_fmf = 'dyna_grid_T' , 120. , 'fmmflx' , .true. , .true. , 'yearly'
sn_rnf = 'dyna_grid_T' , 120. , 'runoffs' , .true. , .true. , 'yearly'
sn_ice = 'dyna_grid_T' , 120. , 'siconc' , .true. , .true. , 'yearly'
sn_qsr = 'dyna_grid_T' , 120. , 'rsntds' , .true. , .true. , 'yearly'
sn_wnd = 'dyna_grid_T' , 120. , 'windsp' , .true. , .true. , 'yearly'
sn_uwd = 'dyna_grid_U' , 120. , 'uocetr_eff', .true. , .true. , 'yearly'
sn_vwd = 'dyna_grid_V' , 120. , 'vocetr_eff', .true. , .true. , 'yearly'
sn_wwd = 'dyna_grid_W' , 120. , 'wocetr_eff', .true. , .true. , 'yearly'
sn_avt = 'dyna_grid_W' , 120. , 'difvsolog' , .true. , .true. , 'yearly'
sn_ubl = 'dyna_grid_U' , 120. , 'ahu_bbl' , .true. , .true. , 'yearly'
sn_vbl = 'dyna_grid_V' , 120. , 'ahv_bbl' , .true. , .true. , 'yearly'
/
doc/namelists/namelist_abl_tools deleted 100644 → 0
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:
:-----------------------------------------------------------------------------
: Atmospheric Boundary Layer preprocessing tool
:-----------------------------------------------------------------------------
:
&nml_dom
jpka = 50, ! ABL vertical levels number
hmax = 2000., ! ABL last level altitude
theta_s = 2., ! vertical grid stretching parameters
hc = 100., !
ln_impose_z1 = .true., ! force ABL first level altitude
z1 = 10., ! ABL firt level imposed altitude [m]
/
&nml_opt
ptemp_method = 3 , ! potential temperature computation method
ln_slp_smth = .true. , ! smooth slp and ghw at high latitudes only
ln_drw_smth = .false. , ! smooth after drowning
ln_slp_log = .false. , ! read log(slp)
ln_read_zsurf = .false. , ! read surface geopotential
ln_hpg_frc = .true. , ! compute horizontal pressure gradient
ln_geo_wnd = .false. , ! compute geostrophic wind
ln_c1d = .false. , ! 1D case
ln_read_mask = .true. , ! read mask file
ln_lsm_land = .false. , ! inverse land & sea masks
ln_perio_latbc = .true. , ! periodic lateral boundary conditions
/
&nml_fld
cn_dir = '',
mask_var = 'LSM',
file_m = 'MASK.nc',
file_u = 'U3D.nc',
file_v = 'V3D.nc',
file_t = 'T3D.nc',
file_q = 'Q3D.nc',
file_p = 'P2D.nc',
file_z = 'Z2D.nc',
file_geos = 'UVG_OUT.nc',
file_hpg = 'HPG_OUT.nc',
/
&nml_out
grd_file = 'dom_cfg_abl_L50Z10.nc',
abl_file = 'ABL_L50Z10_OUT.nc',
drwn_file = 'ABL_DRWN_L50Z10_OUT.nc',
var_name = '',
/
&nml_c1d
iloc = 283,
jloc = 52,
/
doc/namelists/namisf_cfg_eORCA1 deleted 100644 → 0
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!-----------------------------------------------------------------------
&namisf ! Top boundary layer (ISF) (default: OFF)
!-----------------------------------------------------------------------
!
! ---------------- ice shelf melt formulation -------------------------------
!
ln_isf = .true. ! activate ice shelf module
!
! ---------------- cavities opened -------------------------------
!
ln_isfcav_mlt = .false. ! ice shelf melting into the cavity (need ln_isfcav = .true. in domain_cfg.nc)
cn_isfcav_mlt = '3eq' ! ice shelf melting formulation (spe/2eq/3eq/oasis)
! ! spe = fwfisf is read from a forcing field
! ! 2eq = ISOMIP like: 2 equations formulation (Hunter et al., 2006 for a short description)
! ! 3eq = ISOMIP+ like: 3 equations formulation (Asay-Davis et al., 2016 for a short description
rn_htbl = 30. ! thickness of the top boundary layer (Losh et al. 2008)
! ! 0 => thickness of the tbl = thickness of the first wet cell
!
!* 'spe' and 'oasis' case
!---------------------------------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' !
sn_isfcav_fwf = 'isfmlt_cav', -12. , 'fwflisf' , .false. , .true. , 'yearly'
!
! ---------------- cavities parametrised -------------------------------
!
ln_isfpar_mlt = .true. ! ice shelf melting parametrised
cn_isfpar_mlt = 'spe' ! ice shelf melting parametrisation (spe/bg03/oasis)
! ! spe = fwfisf is read from a forcing field
!
!---------------------------------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp.! clim ! 'yearly'/ !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' !
sn_isfpar_zmax = 'runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc' , -12 ,'sodepmax_isf' , .false. , .true. , 'yearly'
sn_isfpar_zmin = 'runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc' , -12 ,'sodepmin_isf' , .false. , .true. , 'yearly'
!* 'spe' and 'oasis' case
sn_isfpar_fwf = 'runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc' , -12 ,'sornfisf', .false. , .true. , 'yearly'
doc/namelists/namsbc_rnf_cfg_eORCA1 deleted 100644 → 0
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!-----------------------------------------------------------------------
&namsbc_rnf ! runoffs (ln_rnf =T)
!-----------------------------------------------------------------------
ln_rnf_mouth = .false. ! specific treatment at rivers mouths
rn_hrnf = 15.e0 ! depth over which enhanced vertical mixing is used (ln_rnf_mouth=T)
rn_avt_rnf = 1.e-3 ! value of the additional vertical mixing coef. [m2/s] (ln_rnf_mouth=T)
rn_rfact = 1.e0 ! multiplicative factor for runoff
ln_rnf_icb = .true. ! read iceberg flux
cn_dir = './' ! root directory for the location of the runoff files
!---------------------------------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' !
sn_rnf = 'runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc', -1 , 'sorunoff', .true. , .true. , 'yearly'
sn_i_rnf = 'runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc', -1 , 'Icb_flux', .true. , .true. , 'yearly'
sn_cnf = 'runoff-icb_DaiTrenberth_Depoorter_eORCA1_JD.nc', 0 , 'socoefr' , .false. , .true. , 'yearly'
sn_s_rnf = 'runoffs' , 24. , 'rosaline', .true. , .true. , 'yearly'
sn_t_rnf = 'runoffs' , 24. , 'rotemper', .true. , .true. , 'yearly'
sn_dep_rnf = 'runoffs' , 0. , 'rodepth' , .false. , .true. , 'yearly'
doc/namelists/namsto
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!-----------------------------------------------------------------------
&namsto ! Stochastic parametrization of EOS (default: OFF)
!-----------------------------------------------------------------------
ln_sto_ldf = .false. ! stochastic lateral diffusion
rn_ldf_std = 0.1 ! lateral diffusion standard deviation (in percent)
rn_ldf_tcor = 1440. ! lateral diffusion correlation timescale (in timesteps)
ln_sto_hpg = .false. ! stochastic pressure gradient
rn_hpg_std = 0.1 ! density gradient standard deviation (in percent)
rn_hpg_tcor = 1440. ! density gradient correlation timescale (in timesteps)
ln_sto_pstar = .false. ! stochastic ice strength
rn_pstar_std = 0.1 ! ice strength standard deviation (in percent)
rn_pstar_tcor = 1440. ! ice strength correlation timescale (in timesteps)
nn_pstar_ord = 1 ! order of autoregressive processes
nn_pstar_flt = 0 ! passes of Laplacian filter
ln_sto_trd = .false. ! stochastic model trend
rn_trd_std = 0.1 ! trend standard deviation (in percent)
rn_trd_tcor = 1440. ! trend correlation timescale (in timesteps)
ln_sto_eos = .false. ! stochastic equation of state
nn_sto_eos = 1 ! number of independent random walks
rn_eos_stdxy = 1.4 ! random walk horz. standard deviation (in grid points)
......@@ -9,6 +23,14 @@
nn_eos_ord = 1 ! order of autoregressive processes
nn_eos_flt = 0 ! passes of Laplacian filter
rn_eos_lim = 2.0 ! limitation factor (default = 3.0)
ln_sto_trc = .false. ! stochastic tracer dynamics
nn_sto_trc = 1 ! number of independent random walks
rn_trc_stdxy = 1.4 ! random walk horz. standard deviation (in grid points)
rn_trc_stdz = 0.7 ! random walk vert. standard deviation (in grid points)
rn_trc_tcor = 1440. ! random walk time correlation (in timesteps)
nn_trc_ord = 1 ! order of autoregressive processes
nn_trc_flt = 0 ! passes of Laplacian filter
rn_trc_lim = 3.0 ! limitation factor (default = 3.0)
ln_rststo = .false. ! start from mean parameter (F) or from restart file (T)
ln_rstseed = .true. ! read seed of RNG from restart file
cn_storst_in = "restart_sto" ! suffix of stochastic parameter restart file (input)
......
doc/namelists/namtrc_ais_cfg deleted 100644 → 0
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!-----------------------------------------------------------------------
&namtrc_ais ! Representation of Antarctic Ice Sheet tracers supply
!-----------------------------------------------------------------------
rn_trafac(3) = 4.476e-07 ! ( 0.5e-3 / 55.85 * 0.05 )
!
nn_ais_tr = 1 ! tracer concentration in iceberg and ice shelf
! = 0 (null concentrations)
! = 1 prescribed concentrations
rn_icbdep = 120. ! Mean underwater depth of iceberg (m)
doc/namelists/namtrc_bc_cfg deleted 100644 → 0
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!----------------------------------------------------------------------
&namtrc_bc ! data for boundary conditions
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' !
sn_trcsbc(2) = 'dust.orca.new' , -1 , 'dustfer' , .true. , .true. , 'yearly'
sn_trcsbc(3) = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly'
rn_trsfac(2) = 6.266e-04 ! Multiplicative factor
rn_trsfac(3) = 5.4464e-01 !
!
sn_trccbc(1) = 'river.orca' , -12 , 'riverdic' , .true. , .true. , 'yearly'
sn_trccbc(2) = 'river.orca' , -12 , 'riverdfe' , .true. , .true. , 'yearly'
sn_trccbc(3) = 'river.orca' , -12 , 'riverdin' , .true. , .true. , 'yearly'
rn_trcfac(1) = 1.0 ! Multiplicative factor
rn_trcfac(2) = 1.0 !
rn_trcfac(3) = 1.0 !
rn_cbc_time = 3.1536e+7 ! Time scaling factor for CBC data (seconds in a year)
doc/namelists/namtrc_cfg deleted 100644 → 0
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!-----------------------------------------------------------------------
&namtrc ! tracers definition
!-----------------------------------------------------------------------
jp_bgc = 24
!
ln_pisces = .true.
ln_my_trc = .false.
ln_age = .false.
ln_cfc11 = .false.
ln_cfc12 = .false.
ln_c14 = .false.
!
!
ln_trcdta = .true. ! Initialisation from data input file (T) or not (F)
ln_trcdmp = .false. ! add a damping termn (T) or not (F)
ln_trcdmp_clo = .false. ! damping term (T) or not (F) on closed seas
ln_trcbc = .true. ! Surface, Lateral or Open Boundaries conditions
ln_trcais = .true. ! Antarctic Ice Sheet nutrient supply
! ! ! ! ! !
! ! name ! title of the field ! units ! init ! sbc ! cbc ! obc ! ais
sn_tracer(1) = 'DIC ' , 'Dissolved inorganic Concentration ', 'mol-C/L' , .true. , .false., .true. , .false. , .false.
sn_tracer(2) = 'Fer ' , 'Dissolved Iron Concentration ', 'mol-C/L' , .true. , .true. , .true. , .false. , .true.
sn_tracer(3) = 'NO3 ' , 'Nitrates Concentration ', 'mol-C/L' , .true. , .true. , .true. , .false. , .false.
sn_tracer(4) = 'PHY ' , 'Nanophytoplankton Concentration ', 'mol-C/L' , .false. , .false., .false., .false. , .false.
doc/namelists/namtrc_dta_cfg deleted 100644 → 0
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!-----------------------------------------------------------------------
&namtrc_dta ! Initialisation from data input file
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' !
sn_trcdta(1) = 'data_DIC_nomask.nc', -12 , 'PiDIC' , .false. , .true. , 'yearly' ,
sn_trcdta(2) = 'data_FER_nomask.nc', -1 , 'Fer' , .true. , .true. , 'yearly' ,
sn_trcdta(3) = 'data_NO3_nomask.nc', -1 , 'NO3' , .true. , .true. , 'yearly' ,
!
rn_trfac(1) = 1.028e-06 ! multiplicative factor
rn_trfac(2) = 1.0e-06 ! - - - -
rn_trfac(3) = 7.6e-06 ! - - - -
doc/namelists/namtrc_opt
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!-----------------------------------------------------------------------
&namtrc_opt ! light availability in the water column
!-----------------------------------------------------------------------
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
sn_par = 'par.orca' , 24 , 'fr_par' , .true. , .true. , 'yearly' , '' , '' , ''
cn_dir = './' ! root directory for the location of the dynamical files
ln_varpar = .true. ! Read PAR from file
parlux = 0.43 ! Fraction of shortwave as PAR
light_loc = 'center' ! Light location in the water cell ('center', 'integral')
! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask !
! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename !
sn_par = 'par.orca' , 24 , 'fr_par' , .true. , .true. , 'yearly' , '' , '' , ''
cn_dir = './' ! root directory for the location of the dynamical files
ln_varpar = .true. ! Read PAR from file
parlux = 0.43 ! Fraction of shortwave as PAR
light_loc = 'center' ! Light location in the water cell ('center', 'integral')
/
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