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Commit 31ad4c69 authored by Christian Ethe's avatar Christian Ethe Committed by Renaud Person
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First step of PISCES halo cleanup

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src/TOP/PISCES/P4Z/p4zlys.F90
+ 38
− 25
View file @ 31ad4c69
......@@ -64,41 +64,43 @@ CONTAINS
!
INTEGER :: ji, jj, jk, jn
REAL(wp) :: zdispot, zrhd, zcalcon
REAL(wp) :: zomegaca, zexcess, zexcess0, zkd
REAL(wp) :: zomegaca, zexcess, zexcess0, zkd, zco3, ztra
CHARACTER (len=25) :: charout
REAL(wp), DIMENSION(jpi,jpj,jpk) :: zco3, zcaldiss, zhinit, zhi, zco3sat
REAL(wp), DIMENSION(A2D(0),jpk) :: zhinit, zhi
REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: zcaldiss, zbicarb, zco3sat
!!---------------------------------------------------------------------
!
IF( ln_timing ) CALL timing_start('p4z_lys')
!
IF( iom_use( "CO3" ) ) ALLOCATE( zbicarb (A2D(0),jpk) )
IF( iom_use( "CO3sat" ) ) ALLOCATE( zco3sat (A2D(0),jpk) )
IF( iom_use( "DCAL" ) ) ALLOCATE( zcaldiss(A2D(0),jpk) )
zhinit (:,:,:) = hi(:,:,:) / ( rhd(:,:,:) + 1._wp )
DO_3D( 0, 0, 0, 0, 1, jpkm1)
zhinit(ji,jj,jk) = hi(ji,jj,jk) / ( rhd(ji,jj,jk) + 1._wp )
END_3D
!
! -------------------------------------------
! COMPUTE [CO3--] and [H+] CONCENTRATIONS
! -------------------------------------------
CALL solve_at_general( zhinit, zhi, Kbb )
DO_3D( nn_hls, nn_hls, nn_hls, nn_hls, 1, jpkm1)
zco3(ji,jj,jk) = tr(ji,jj,jk,jpdic,Kbb) * ak13(ji,jj,jk) * ak23(ji,jj,jk) / (zhi(ji,jj,jk)**2 &
DO_3D( 0, 0, 0, 0, 1, jpkm1)
!
zco3 = tr(ji,jj,jk,jpdic,Kbb) * ak13(ji,jj,jk) * ak23(ji,jj,jk) / (zhi(ji,jj,jk)**2 &
& + ak13(ji,jj,jk) * zhi(ji,jj,jk) + ak13(ji,jj,jk) * ak23(ji,jj,jk) + rtrn )
hi (ji,jj,jk) = zhi(ji,jj,jk) * ( rhd(ji,jj,jk) + 1._wp )
END_3D
! ---------------------------------------------------------
! CALCULATE DEGREE OF CACO3 SATURATION AND CORRESPONDING
! DISSOLOUTION AND PRECIPITATION OF CACO3 (BE AWARE OF
! MGCO3)
! ---------------------------------------------------------
! CALCULATE DEGREE OF CACO3 SATURATION AND CORRESPONDING
! DISSOLOUTION AND PRECIPITATION OF CACO3 (BE AWARE OF MGCO3)
DO_3D( nn_hls, nn_hls, nn_hls, nn_hls, 1, jpkm1)
! DEVIATION OF [CO3--] FROM SATURATION VALUE
! Salinity dependance in zomegaca and divide by rhd to have good units
zcalcon = calcon * ( salinprac(ji,jj,jk) / 35._wp )
zrhd = rhd(ji,jj,jk) + 1._wp
zomegaca = ( zcalcon * zco3(ji,jj,jk) ) / ( aksp(ji,jj,jk) * zrhd + rtrn )
zco3sat(ji,jj,jk) = aksp(ji,jj,jk) * zrhd / ( zcalcon + rtrn )
zomegaca = ( zcalcon * zco3 ) / ( aksp(ji,jj,jk) * zrhd + rtrn )
! SET DEGREE OF UNDER-/SUPERSATURATION
excess(ji,jj,jk) = 1._wp - zomegaca
......@@ -116,24 +118,35 @@ CONTAINS
! CHANGE OF [CO3--] , [ALK], PARTICULATE [CACO3],
! AND [SUM(CO2)] DUE TO CACO3 DISSOLUTION/PRECIPITATION
zcaldiss(ji,jj,jk) = zdispot * rfact2 / rmtss ! calcite dissolution
ztra = zdispot * rfact2 / rmtss ! calcite dissolution
!
tr(ji,jj,jk,jptal,Krhs) = tr(ji,jj,jk,jptal,Krhs) + 2. * ztra
tr(ji,jj,jk,jpcal,Krhs) = tr(ji,jj,jk,jpcal,Krhs) - ztra
tr(ji,jj,jk,jpdic,Krhs) = tr(ji,jj,jk,jpdic,Krhs) + ztra
!
IF( iom_use( "CO3" ) ) zbicarb (ji,jj,jk) = zco3 ! bicarbonate
IF( iom_use( "CO3sat" ) ) zco3sat (ji,jj,jk) = zco3 / ( zomegaca + rtrn ) ! calcite saturation
IF( iom_use( "DCAL" ) ) zcaldiss(ji,jj,jk) = ztra ! calcite dissolution
!
tr(ji,jj,jk,jptal,Krhs) = tr(ji,jj,jk,jptal,Krhs) + 2. * zcaldiss(ji,jj,jk)
tr(ji,jj,jk,jpcal,Krhs) = tr(ji,jj,jk,jpcal,Krhs) - zcaldiss(ji,jj,jk)
tr(ji,jj,jk,jpdic,Krhs) = tr(ji,jj,jk,jpdic,Krhs) + zcaldiss(ji,jj,jk)
END_3D
!
IF( lk_iomput .AND. knt == nrdttrc ) THEN
CALL iom_put( "PH" , -1. * LOG10( MAX( hi(:,:,:), rtrn ) ) * tmask(:,:,:) )
IF( iom_use( "CO3" ) ) THEN
zco3(:,:,jpk) = 0. ; CALL iom_put( "CO3" , zco3(:,:,:) * 1.e+3 * tmask(:,:,:) )
IF( iom_use( "PH" ) ) CALL iom_put( "PH" , -1. * LOG10( MAX( hi(A2D(0),1:jpk), rtrn ) ) * tmask(A2D(0),1:jpk) )
IF( iom_use( "CO3" ) ) THEN ! bicarbonate
zbicarb(A2D(0),jpk) = 0.
CALL iom_put( "CO3" , zbicarb(A2D(0),1:jpk) * 1.e+3 * tmask(A2D(0),1:jpk) )
DEALLOCATE( zbicarb )
ENDIF
IF( iom_use( "CO3sat" ) ) THEN
zco3sat(:,:,jpk) = 0. ; CALL iom_put( "CO3sat", zco3sat(:,:,:) * 1.e+3 * tmask(:,:,:) )
IF( iom_use( "CO3sat" ) ) THEN ! calcite saturation
zco3sat(A2D(0),jpk) = 0.
CALL iom_put( "CO3sat", zco3sat(A2D(0),1:jpk) * 1.e+3 * tmask(A2D(0),1:jpk) )
DEALLOCATE( zco3sat )
ENDIF
IF( iom_use( "DCAL" ) ) THEN
zcaldiss(:,:,jpk) = 0. ; CALL iom_put( "DCAL" , zcaldiss(:,:,:) * 1.e+3 * rfact2r * tmask(:,:,:) )
IF( iom_use( "DCAL" ) ) THEN ! calcite dissolution
zcaldiss(A2D(0),jpk) = 0.
CALL iom_put( "DCAL", zcaldiss(A2D(0),1:jpk) * 1.e+3 * rfact2r * tmask(A2D(0),1:jpk) )
DEALLOCATE( zcaldiss )
ENDIF
ENDIF
!
......
src/TOP/PISCES/P4Z/p4zprod.F90
+ 186
− 154
View file @ 31ad4c69
This diff is collapsed.
src/TOP/PISCES/sms_pisces.F90
+ 24
− 22
View file @ 31ad4c69
......@@ -124,6 +124,8 @@ MODULE sms_pisces
LOGICAL, SAVE :: lk_sed
!! * Substitutions
# include "do_loop_substitute.h90"
!!----------------------------------------------------------------------
!! NEMO/TOP 4.0 , NEMO Consortium (2018)
!! $Id: sms_pisces.F90 15459 2021-10-29 08:19:18Z cetlod $
......@@ -145,47 +147,47 @@ CONTAINS
IF( ln_p4z .OR. ln_p5z ) THEN
!* Optics
ALLOCATE( enano(jpi,jpj,jpk) , ediat(jpi,jpj,jpk) , &
& enanom(jpi,jpj,jpk), ediatm(jpi,jpj,jpk), &
& emoy(jpi,jpj,jpk) , etotm(jpi,jpj,jpk), STAT=ierr(2) )
ALLOCATE( enano(A2D(0),jpk) , ediat(A2D(0),jpk) , &
& enanom(A2D(0),jpk), ediatm(A2D(0),jpk), &
& emoy(A2D(0),jpk) , etotm(A2D(0),jpk), STAT=ierr(2) )
!* Biological SMS
ALLOCATE( xksimax(jpi,jpj) , biron(jpi,jpj,jpk) , STAT=ierr(3) )
ALLOCATE( xksimax(jpi,jpj) , biron(A2D(0),jpk) , STAT=ierr(3) )
! Biological SMS
ALLOCATE( xfracal (jpi,jpj,jpk), orem (jpi,jpj,jpk), &
& nitrfac (jpi,jpj,jpk), nitrfac2(jpi,jpj,jpk), &
& prodcal (jpi,jpj,jpk), xdiss (jpi,jpj,jpk), &
& prodpoc (jpi,jpj,jpk), conspoc (jpi,jpj,jpk), &
& prodgoc (jpi,jpj,jpk), consgoc (jpi,jpj,jpk), &
& blim (jpi,jpj,jpk), consfe3 (jpi,jpj,jpk), &
& xfecolagg(jpi,jpj,jpk), xcoagfe (jpi,jpj,jpk), STAT=ierr(4) )
ALLOCATE( xfracal (A2D(0),jpk), orem (A2D(0),jpk), &
& nitrfac (A2D(0),jpk), nitrfac2(A2D(0),jpk), &
& prodcal (A2D(0),jpk), xdiss (A2D(0),jpk), &
& prodpoc (A2D(0),jpk), conspoc (A2D(0),jpk), &
& prodgoc (A2D(0),jpk), consgoc (A2D(0),jpk), &
& blim (A2D(0),jpk), consfe3 (A2D(0),jpk), &
& xfecolagg(A2D(0),jpk), xcoagfe (A2D(0),jpk), STAT=ierr(4) )
!* Carbonate chemistry
ALLOCATE( ak13 (jpi,jpj,jpk) , &
& ak23(jpi,jpj,jpk) , aksp (jpi,jpj,jpk) , &
& hi (jpi,jpj,jpk) , excess(jpi,jpj,jpk) , &
& aphscale(jpi,jpj,jpk), STAT=ierr(5) )
ALLOCATE( ak13 (A2D(0),jpk) , &
& ak23(A2D(0),jpk) , aksp (A2D(0),jpk) , &
& hi (A2D(0),jpk) , excess(A2D(0),jpk) , &
& aphscale(A2D(0),jpk), STAT=ierr(5) )
!
!* Temperature dependency of SMS terms
ALLOCATE( tgfunc (jpi,jpj,jpk) , tgfunc2(jpi,jpj,jpk), STAT=ierr(6) )
ALLOCATE( tgfunc (A2D(0),jpk) , tgfunc2(A2D(0),jpk), STAT=ierr(6) )
!
!* Sinking speed
ALLOCATE( wsbio3 (jpi,jpj,jpk) , wsbio4 (jpi,jpj,jpk), STAT=ierr(7) )
ALLOCATE( wsbio3 (A2D(0),jpk) , wsbio4 (A2D(0),jpk), STAT=ierr(7) )
!* Size of phytoplankton cells
ALLOCATE( sizen (jpi,jpj,jpk), sized (jpi,jpj,jpk), &
& sizena(jpi,jpj,jpk), sizeda(jpi,jpj,jpk), STAT=ierr(8) )
ALLOCATE( sizen (A2D(0),jpk), sized (A2D(0),jpk), &
& sizena(A2D(0),jpk), sizeda(A2D(0),jpk), STAT=ierr(8) )
!
ALLOCATE( plig(jpi,jpj,jpk) , STAT=ierr(9) )
ALLOCATE( plig(A2D(0),jpk) , STAT=ierr(9) )
ENDIF
!
IF( ln_p5z ) THEN
! PISCES-QUOTA specific part
ALLOCATE( epico(jpi,jpj,jpk) , epicom(jpi,jpj,jpk) , STAT=ierr(10) )
ALLOCATE( epico(A2D(0),jpk) , epicom(A2D(0),jpk) , STAT=ierr(10) )
!* Size of phytoplankton cells
ALLOCATE( sizep(jpi,jpj,jpk), sizepa(jpi,jpj,jpk), STAT=ierr(11) )
ALLOCATE( sizep(A2D(0),jpk), sizepa(A2D(0),jpk), STAT=ierr(11) )
ENDIF
!
sms_pisces_alloc = MAXVAL( ierr )
......
src/TOP/PISCES/trcice_pisces.F90
+ 13
− 11
View file @ 31ad4c69
......@@ -19,6 +19,8 @@ MODULE trcice_pisces
PUBLIC trc_ice_ini_pisces ! called by trcini.F90 module
!! * Substitutions
# include "do_loop_substitute.h90"
!!----------------------------------------------------------------------
!! NEMO/TOP 4.0 , NEMO Consortium (2018)
!! $Id: trcice_pisces.F90 10794 2019-03-22 09:25:28Z cetlod $
......@@ -283,15 +285,15 @@ CONTAINS
ENDIF
!
DO jn = jp_pcs0, jp_pcs1
IF( cn_trc_o(jn) == 'GL ' ) trc_o(:,:,jn) = zpisc(jn,1) ! Global case
IF( cn_trc_o(jn) == 'GL ' ) trc_o(A2D(0),jn) = zpisc(jn,1) ! Global case
IF( cn_trc_o(jn) == 'AA ' ) THEN
WHERE( gphit(:,:) >= 0._wp ) ; trc_o(:,:,jn) = zpisc(jn,2) ; END WHERE ! Arctic
WHERE( gphit(:,:) < 0._wp ) ; trc_o(:,:,jn) = zpisc(jn,3) ; END WHERE ! Antarctic
WHERE( gphit(A2D(0)) >= 0._wp ) ; trc_o(A2D(0),jn) = zpisc(jn,2) ; END WHERE ! Arctic
WHERE( gphit(A2D(0)) < 0._wp ) ; trc_o(A2D(0),jn) = zpisc(jn,3) ; END WHERE ! Antarctic
ENDIF
IF( cn_cfg == "orca" .OR. cn_cfg == "ORCA" ) THEN ! Baltic Sea particular case for ORCA configurations
WHERE( 14._wp <= glamt(:,:) .AND. glamt(:,:) <= 32._wp .AND. &
54._wp <= gphit(:,:) .AND. gphit(:,:) <= 66._wp )
trc_o(:,:,jn) = zpisc(jn,4)
WHERE( 14._wp <= glamt(A2D(0)) .AND. glamt(A2D(0)) <= 32._wp .AND. &
54._wp <= gphit(A2D(0)) .AND. gphit(A2D(0)) <= 66._wp )
trc_o(A2D(0),jn) = zpisc(jn,4)
END WHERE
ENDIF
ENDDO
......@@ -321,16 +323,16 @@ CONTAINS
DO jn = jp_pcs0, jp_pcs1
!-- Everywhere but in the Baltic
IF ( trc_ice_ratio(jn) >= -1._wp ) THEN ! no prescribed conc. ; typically everything but iron)
trc_i(:,:,jn) = zratio(jn,1) * trc_o(:,:,jn)
trc_i(A2D(0),jn) = zratio(jn,1) * trc_o(A2D(0),jn)
ELSE ! prescribed concentration
trc_i(:,:,jn) = trc_ice_prescr(jn)
trc_i(A2D(0),jn) = trc_ice_prescr(jn)
ENDIF
!-- Baltic
IF( cn_cfg == "orca" .OR. cn_cfg == "ORCA" ) THEN
IF ( trc_ice_ratio(jn) >= - 1._wp ) THEN ! no prescribed conc. ; typically everything but iron)
WHERE( 14._wp <= glamt(:,:) .AND. glamt(:,:) <= 32._wp .AND. &
54._wp <= gphit(:,:) .AND. gphit(:,:) <= 66._wp )
trc_i(:,:,jn) = zratio(jn,2) * trc_o(:,:,jn)
WHERE( 14._wp <= glamt(A2D(0)) .AND. glamt(A2D(0)) <= 32._wp .AND. &
54._wp <= gphit(A2D(0)) .AND. gphit(A2D(0)) <= 66._wp )
trc_i(A2D(0),jn) = zratio(jn,2) * trc_o(A2D(0),jn)
END WHERE
ENDIF
ENDIF
......
src/TOP/PISCES/trcwri_pisces.F90
+ 11
− 7
View file @ 31ad4c69
......@@ -38,7 +38,7 @@ CONTAINS
CHARACTER (len=20) :: cltra
REAL(wp) :: zfact
INTEGER :: ji, jj, jk, jn
REAL(wp), DIMENSION(jpi,jpj) :: zdic, zo2min, zdepo2min
REAL(wp), DIMENSION(A2D(0)) :: zdic, zo2min, zdepo2min
!!---------------------------------------------------------------------
! write the tracer concentrations in the file
......@@ -60,15 +60,19 @@ CONTAINS
IF( iom_use( "INTDIC" ) ) THEN ! DIC content in kg/m2
zdic(:,:) = 0.
DO jk = 1, jpkm1
zdic(:,:) = zdic(:,:) + tr(:,:,jk,jpdic,Kmm) * e3t(:,:,jk,Kmm) * tmask(:,:,jk) * 12.
DO_2D( 0, 0, 0, 0 )
zdic(ji,jj) = zdic(ji,jj) + tr(ji,jj,jk,jpdic,Kmm) * e3t(ji,jj,jk,Kmm) * tmask(ji,jj,jk) * 12.
END_2D
ENDDO
CALL iom_put( 'INTDIC', zdic )
CALL iom_put( 'INTDIC', zdic )
ENDIF
!
IF( iom_use( "O2MIN" ) .OR. iom_use ( "ZO2MIN" ) ) THEN ! Oxygen minimum concentration and depth
zo2min (:,:) = tr(:,:,1,jpoxy,Kmm) * tmask(:,:,1)
zdepo2min(:,:) = gdepw(:,:,1,Kmm) * tmask(:,:,1)
DO_3D( nn_hls, nn_hls, nn_hls, nn_hls, 2, jpkm1 )
IF( iom_use( "O2MIN" ) .OR. iom_use ( "ZO2MIN" ) ) THEN ! Oxygen minimum concentration and depth
DO_2D( 0, 0, 0, 0 )
zo2min (ji,jj) = tr(ji,jj,1,jpoxy,Kmm) * tmask(ji,jj,1)
zdepo2min(ji,jj) = gdepw(ji,jj,1,Kmm) * tmask(ji,jj,1)
END_2D
DO_3D( 0, 0, 0, 0, 2, jpkm1 )
IF( tmask(ji,jj,jk) == 1 ) then
IF( tr(ji,jj,jk,jpoxy,Kmm) < zo2min(ji,jj) ) then
zo2min (ji,jj) = tr(ji,jj,jk,jpoxy,Kmm)
......
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