Fix manual_build.sh so that it sets and uses its options correctly. This has been used to build the latest manual with: ./manual_build.sh -p -r 4.2.0

Merge branch 'manual_revision_2022' of https://forge.nemo-ocean.eu/nemo/nemo into manual_revision_2022

Tidy up XIOS parts of chap_DIA.tex and fix some minor issues in chap_misc.tex, chap_ZDF.tex and apdx_DOMAINcfg.tex (missing labels and figure)

Add K. Demange reference

remove key_traldf_c2d and refresh with reference to nn_aht_ijk_t=-20 plus revision on glo case description