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Commit 37caf2c2 authored by Tomas Lovato's avatar Tomas Lovato
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fix cross references within the user guide

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1 merge request!2Fix several wrong linkages
This commit is part of merge request !2. Comments created here will be created in the context of that merge request.
......@@ -159,7 +159,7 @@ Analytical forcing for heat, freshwater and wind-stress fields are applied.
This configuration acts also as demonstrator of the **user defined setup**
(``ln_read_cfg = .false.``) and grid setting are handled through
the ``&namusr_def`` controls in :file:`namelist.cfg, lines 35-41 : <https://forge.nemo-ocean.eu/nemo/nemo/-/tree/4.2.0/cfgs/GYRE_PISCES/EXPREF/namelist_cfg>`_
the ``&namusr_def`` controls in :coderepo:`namelist.cfg, lines 35-41 : </cfgs/GYRE_PISCES/EXPREF/namelist_cfg>`
Note that, the default grid size is 30x20 grid points (with ``nn_GYRE = 1``) and
......@@ -246,7 +246,7 @@ ORCA2_OFF_PISCES
| This enables for an offline coupling of TOP components.
Pre-calculated dynamical fields are provided to NEMO using
the namelist ``&namdta_dyn`` in :file:`namelist_cfg <https://forge.nemo-ocean.eu/nemo/nemo/-/blob/4.2.0/cfgs/ORCA2_OFF_PISCES/EXPREF/namelist_cfg>`_,
the namelist ``&namdta_dyn`` in :coderepo:`namelist_cfg </cfgs/ORCA2_OFF_PISCES/EXPREF/namelist_cfg>`,
in this case with a 5 days frequency (120 hours):
......
......@@ -153,14 +153,12 @@ Description of 1\ :sup:`st` level tree structure
+---------------+-------------------------------------------------+
| :file:`cfgs` | :doc:`Reference configurations <cfgs>` |
+---------------+-------------------------------------------------+
| :file:`doc` | :doc:`Documentation <doc>` |
+---------------+-------------------------------------------------+
| :file:`ext` | Dependencies included |
| | (``AGRIF``, ``FCM``, ``PPR`` & ``IOIPSL``) |
+---------------+-------------------------------------------------+
| :file:`mk` | Compilation scripts |
+---------------+-------------------------------------------------+
| :file:`src` | :doc:`NEMO codebase <src>` |
| :file:`src` | NEMO codebase |
+---------------+-------------------------------------------------+
| :file:`tests` | :doc:`Test cases <tests>` |
| | (unsupported) |
......
......@@ -148,7 +148,7 @@ There are two options for creating a :file:`domain_cfg.nc` file:
- Users can adapt and apply the supplied tool available in :file:`./tools/DOMAINcfg`.
This tool is based on code extracted from NEMO version 3.6 and will allow similar choices for
the horizontal and vertical grids that were available internally to that version.
See :ref:`tools <DOMAINcfg>` for details.
See :doc:`DOMAINcfg tool <tools>` for details.
Option 2: Adapt the usr_def configuration module of NEMO for you own purposes
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