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Fix several wrong linkages

Merged Tomas Lovato requested to merge fix_file_referencing into main
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@@ -206,7 +206,7 @@ This configuration uses the three components
- |OCE|, the ocean dynamical core
- |ICE|, the thermodynamic-dynamic sea ice model.
- |MBG|, passive tracer transport module and PISCES BGC model :cite:`aumont.ethé.ea_GMD15`
- |TOP|, passive tracer transport module and PISCES BGC model :cite:`aumont.ethé.ea_GMD15`
All components share the same grid.
The model is forced with CORE-II normal year atmospheric forcing and
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