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.gitlab/issue_templates/Bug.md 0 → 100644
View file @ d81fb79c
#### Context
_Please provide informations on how to reproduce the bug:_
- [x] Branches impacted: current release and/or main
- [x] Reference configuration/test case (chosen or used as template) ~AMM ~gyre ~orca ~papa or engines involved ~ABL ~NST ~OFF ~TOP ~SAO ~SAS ~"SI³" ~SWE
- [x] Computing architecture: compiler, MPI & NetCDF libs (name and version)
- [x] Dependencies: ~AGRIF ~BFM ~CICE ~OASIS ~XIOS (with known branch and hash/revision/version), ...
- [ ] _Any other relevant information_
#### Analysis
_Please give your thoughts on the issue._
#### Fix
_Please share your proven solution or your recommendation on how to proceed._
---
_You can_
- :clipboard: _Copy code blocks_ (\`\`\`fortran ...\`\`\`) _or diff outputs_ (\`\`\`diff ...\`\`\`)
- :paperclip: _Include files_
- :link: _Add external links._
:warning: _Please remove all unnecessary lines in this description, like the one you are reading in italic, before creating the issue._ :warning:
.gitlab/issue_templates/Feature.md 0 → 100644
View file @ d81fb79c
#### Context
_Please provide informations on how to set the modelling environment_
- [ ] Reference configuration/test case (to add, chosen or used as template)
- [x] Modifications of versioned files: Fortran routines (`*.[Ffh]90`), namelists (`namelist\_*cfg`), outputs settings (`*.xml`), ...
- [ ] Additional dependencies
- [ ] New datasets
- [ ] _Any other relevant information_
#### Proposal
_Please share your ideas or your wishes about modelling improvements for the NEMO model._
_In particular, express if you are willing to contribute personally to the implementation of this feature in NEMO._
---
_You can_
- :clipboard: _Copy code blocks_ (\`\`\`fortran ...\`\`\`) _or diff outputs_ (\`\`\`diff ...\`\`\`)
- :paperclip: _Include files_
- :link: _Add external links._
:warning: _Please remove all unnecessary lines in this description, like the one you are reading in italic, before creating the issue._ :warning:
.gitlab/issue_templates/Task_preview.md 0 → 100644
View file @ d81fb79c
#### Development description
_Describe the goal and the methodology._
_Add reference documents or publications if relevant._
#### Code implementation
_Describe flow chart of the changes in the code._
_List the Fortran modules and subroutines to be created/edited/deleted._
_Detailed list of new variables to be defined (including namelists), give for each the chosen name and description wrt coding rules._
#### Documentation updates
_Using previous parts, define the main changes to be done in the ~doc (manuals, guide, web pages, ...)._
.gitlab/merge_request_templates/.gitkeep 0 → 100644
View file @ d81fb79c
.gitlab/merge_request_templates/Task_review.md 0 → 100644
View file @ d81fb79c
#### Tests
Once the development is done, the PI should complete the tests section below and after ask the reviewers to start their review.
This part should contain the detailed results of ~SETTE tests (restartability and reproducibility for each of the reference configuration) and detailed results of restartability and reproducibility when the option is activated on specified configurations used for this test.
**Regular checks**
- [ ] Can this change be shown to produce expected impact (option activated)?
- [ ] Can this change be shown to have a null impact (option not activated)?
- [ ] Results of the required bit comparability tests been run: are there no differences when activating the development?
- [ ] If some differences appear, is reason for the change valid/understood?
- [ ] If some differences appear, is the impact as expected on model configurations?
- [ ] Is this change expected to preserve all diagnostics?
- [ ] If no, is reason for the change valid/understood?
- [ ] Are there significant changes in run time/memory?
#### Review
A successful review is needed to schedule the merge of this development into the future NEMO release during next Merge Party (usually in November).
**Assessments**
- [ ] Is the proposed methodology now implemented?
- [ ] Are the code changes in agreement with the flowchart defined at preview step?
- [ ] Are the code changes in agreement with list of routines and variables as proposed at preview step?
- [ ] If, not, are the discrepancies acceptable?
- [ ] Is the in-line documentation accurate and sufficient?
- [ ] Do the code changes comply with NEMO coding standards?
- [ ] Is the development documented with sufficient details for others to understand the impact of the change?
- [ ] Is the project ~doc (manual, guide, web, ...) now updated or completed following the proposed summary in preview section?
arch/MERCATOR/arch-X64_AA_GCC_OMPI.fcm 0 → 100644
View file @ d81fb79c
# compiler options for AA (using GCC compiler & OpenMPI)
#
# module use /home/ar0s/modules
# prgenv/gnu gcc/11.2.0 openmpi/4.1.1.1 hdf5-parallel/1.10.6 netcdf4-parallel/4.7.4 xios/trunk/rev2320-impi
#
#
# NCDF_INC netcdf4 include file
# NCDF_LIB netcdf4 library
# XIOS_INC xios include file (taken into accound only if key_xios is activated)
# XIOS_LIB xios library (taken into accound only if key_xios is activated)
# OASIS_INC oasis include file (taken into accound only if key_oasis3 is activated)
# OASIS_LIB oasis library (taken into accound only if key_oasis3 is activated)
#
# FC Fortran compiler command
# FCFLAGS Fortran compiler flags
# FFLAGS Fortran 77 compiler flags
# LD linker
# LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries
# FPPFLAGS pre-processing flags
# AR assembler
# ARFLAGS assembler flags
# MK make
# USER_INC complete list of include files
# USER_LIB complete list of libraries to pass to the linker
# CC C compiler used to compile conv for AGRIF
# CFLAGS compiler flags used with CC
#
# Note that:
# - unix variables "$..." are accpeted and will be evaluated before calling fcm.
# - fcm variables are starting with a % (and not a $)
#
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
# All NETCDF and HDF paths are empty as they are automatically defined through environment
# variables by the load of modules
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
#
#
%NCDF_INC ${NETCDF4_INCLUDE}
#%NCDF_LIB ${NETCDF4_LIB} ${HDF5_LIB}
%NCDF_LIB ${NETCDF4_LIB} -L/usr/local/apps/hdf5-parallel/1.10.6/GNU/8.4/OMPI/4.1/lib -Wl,-rpath,/usr/local/apps/hdf5-parallel/1.10.6/GNU/8.4/OMPI/4.1/lib -lhdf5hl_fortran -lhdf5_hl_cpp -lhdf5_hl -lhdf5_fortran -lhdf5_cpp -lhdf5 -lm -lhdf5_hl -lhdf5
%XIOS_INC -I${XIOS_INC}
%XIOS_LIB -L${XIOS_LIB} -lxios
%OASIS_INC -I${OASIS_DIR}/build/lib/mct -I${OASIS_DIR}/build/lib/psmile.MPI1
%OASIS_LIB -L${OASIS_DIR}/lib -lpsmile.MPI1 -lmct -lmpeu -lscrip
%CPP cpp -Dkey_nosignedzero
%FC mpif90 -c -cpp
#%FCFLAGS -fdefault-real-8 -O2 -ftree-vectorize -funroll-all-loops -ffree-line-length-none -Wno-missing-include-dirs
%FCFLAGS -fdefault-real-8 -O3 -ffree-line-length-none -Wno-missing-include-dirs -fallow-argument-mismatch
%FFLAGS %FCFLAGS
%LD mpif90
%LDFLAGS -lstdc++
%FPPFLAGS -P -traditional
%AR ar
%ARFLAGS rs
%MK gmake
%USER_INC %XIOS_INC %OASIS_INC %NCDF_INC
%USER_LIB %XIOS_LIB %OASIS_LIB %NCDF_LIB
%CC mpicc
%CFLAGS -O0
arch/MERCATOR/arch-X64_AA_INTEL_IMPI.fcm 0 → 100644
View file @ d81fb79c
# compiler options for AA (using INTEL compiler & INTEL MPI)
#
# module use /home/ar0s/modules
# module load prgenv/intel intel/2021.4.0 intel-mpi/2021.4.0 hdf5-parallel/1.10.6 netcdf4-parallel/4.7.4 xios/trunk/rev2320-impi
#
#
# NCDF_INC netcdf4 include file
# NCDF_LIB netcdf4 library
# XIOS_INC xios include file (taken into accound only if key_xios is activated)
# XIOS_LIB xios library (taken into accound only if key_xios is activated)
# OASIS_INC oasis include file (taken into accound only if key_oasis3 is activated)
# OASIS_LIB oasis library (taken into accound only if key_oasis3 is activated)
#
# FC Fortran compiler command
# FCFLAGS Fortran compiler flags
# FFLAGS Fortran 77 compiler flags
# LD linker
# LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries
# FPPFLAGS pre-processing flags
# AR assembler
# ARFLAGS assembler flags
# MK make
# USER_INC complete list of include files
# USER_LIB complete list of libraries to pass to the linker
# CC C compiler used to compile conv for AGRIF
# CFLAGS compiler flags used with CC
#
# Note that:
# - unix variables "$..." are accpeted and will be evaluated before calling fcm.
# - fcm variables are starting with a % (and not a $)
#
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
# All NETCDF and HDF paths are empty as they are automatically defined through environment
# variables by the load of modules
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
#
#
%NCDF_INC ${NETCDF4_INCLUDE}
%NCDF_LIB ${NETCDF4_LIB} ${HDF5_LIB}
%XIOS_INC -I${XIOS_INC}
%XIOS_LIB -L${XIOS_LIB} -lxios -lstdc++
%OASIS_INC -I${OASIS_DIR}/build/lib/mct -I${OASIS_DIR}/build/lib/psmile.MPI1
%OASIS_LIB -L${OASIS_DIR}/lib -lpsmile.MPI1 -lmct -lmpeu -lscrip
%CPP cpp
%FC mpiifort -c -cpp
%FCFLAGS -march=core-avx2 -i4 -r8 -O3 -fp-model strict -fno-alias -align array64byte
%FFLAGS %FCFLAGS
%LD mpiifort
%LDFLAGS
%FPPFLAGS -P -traditional
%AR ar
%ARFLAGS rs
%MK gmake
%USER_INC %XIOS_INC %OASIS_INC %NCDF_INC
%USER_LIB %XIOS_LIB %OASIS_LIB %NCDF_LIB
%CC mpiicc
%CFLAGS -O0
arch/MERCATOR/arch-X64_AA_INTEL_OMPI.fcm 0 → 100644
View file @ d81fb79c
# compiler options for AA (using INTEL compiler & OpenMPI)
#
# module purge
# module use /home/ar0s/modules
# module load prgenv/intel intel/2021.4.0 openmpi/4.1.1.1 hdf5-parallel/1.10.6 netcdf4-parallel/4.7.4 xios/trunk/rev2320-nmpi
#
#
# NCDF_INC netcdf4 include file
# NCDF_LIB netcdf4 library
# XIOS_INC xios include file (taken into accound only if key_xios is activated)
# XIOS_LIB xios library (taken into accound only if key_xios is activated)
# OASIS_INC oasis include file (taken into accound only if key_oasis3 is activated)
# OASIS_LIB oasis library (taken into accound only if key_oasis3 is activated)
#
# FC Fortran compiler command
# FCFLAGS Fortran compiler flags
# FFLAGS Fortran 77 compiler flags
# LD linker
# LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries
# FPPFLAGS pre-processing flags
# AR assembler
# ARFLAGS assembler flags
# MK make
# USER_INC complete list of include files
# USER_LIB complete list of libraries to pass to the linker
# CC C compiler used to compile conv for AGRIF
# CFLAGS compiler flags used with CC
#
# Note that:
# - unix variables "$..." are accpeted and will be evaluated before calling fcm.
# - fcm variables are starting with a % (and not a $)
#
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
# All NETCDF and HDF paths are empty as they are automatically defined through environment
# variables by the load of modules
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
#
#
%NCDF_INC ${NETCDF4_INCLUDE}
%NCDF_LIB ${NETCDF4_LIB} -L${HDF5_DIR}/lib -Wl,-rpath,${HDF5_DIR}/lib -lhdf5_hl -lhdf5 -lz
%XIOS_INC -I${XIOS_INC}
%XIOS_LIB -L${XIOS_LIB} -lxios -lstdc++
%OASIS_INC -I${OASIS_DIR}/build/lib/mct -I${OASIS_DIR}/build/lib/psmile.MPI1
%OASIS_LIB -L${OASIS_DIR}/lib -lpsmile.MPI1 -lmct -lmpeu -lscrip
%CPP cpp
%FC mpifort -c -cpp
%FCFLAGS -march=core-avx2 -i4 -r8 -O3 -fp-model strict -fno-alias -align array64byte
%FFLAGS %FCFLAGS
%LD mpifort
%LDFLAGS
%FPPFLAGS -P -traditional
%AR ar
%ARFLAGS rs
%MK gmake
%USER_INC %XIOS_INC %OASIS_INC %NCDF_INC
%USER_LIB %XIOS_LIB %OASIS_LIB %NCDF_LIB
%CC mpicc
%CFLAGS -O0
arch/MERCATOR/arch-X64_AA_INTEL_OMPI_DEBUG.fcm 0 → 100644
View file @ d81fb79c
# compiler options for AA (using INTEL compiler & OpenMPI)
#
# module purge
# module use /home/ar0s/modules
# module load prgenv/intel intel/2021.4.0 openmpi/4.1.1.1 hdf5-parallel/1.10.6 netcdf4-parallel/4.7.4 xios/trunk/rev2320-nmpi
#
#
# NCDF_INC netcdf4 include file
# NCDF_LIB netcdf4 library
# XIOS_INC xios include file (taken into accound only if key_xios is activated)
# XIOS_LIB xios library (taken into accound only if key_xios is activated)
# OASIS_INC oasis include file (taken into accound only if key_oasis3 is activated)
# OASIS_LIB oasis library (taken into accound only if key_oasis3 is activated)
#
# FC Fortran compiler command
# FCFLAGS Fortran compiler flags
# FFLAGS Fortran 77 compiler flags
# LD linker
# LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries
# FPPFLAGS pre-processing flags
# AR assembler
# ARFLAGS assembler flags
# MK make
# USER_INC complete list of include files
# USER_LIB complete list of libraries to pass to the linker
# CC C compiler used to compile conv for AGRIF
# CFLAGS compiler flags used with CC
#
# Note that:
# - unix variables "$..." are accpeted and will be evaluated before calling fcm.
# - fcm variables are starting with a % (and not a $)
#
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
# All NETCDF and HDF paths are empty as they are automatically defined through environment
# variables by the load of modules
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
#
#
%NCDF_INC ${NETCDF4_INCLUDE}
%NCDF_LIB ${NETCDF4_LIB} -L${HDF5_DIR}/lib -Wl,-rpath,${HDF5_DIR}/lib -lhdf5_hl -lhdf5 -lz
%XIOS_INC -I${XIOS_INC}
%XIOS_LIB -L${XIOS_LIB} -lxios -lstdc++
%OASIS_INC -I${OASIS_DIR}/build/lib/mct -I${OASIS_DIR}/build/lib/psmile.MPI1
%OASIS_LIB -L${OASIS_DIR}/lib -lpsmile.MPI1 -lmct -lmpeu -lscrip
%CPP cpp
%FC mpifort -c -cpp
%FCFLAGS -march=core-avx2 -i4 -r8 -g -O0 -debug all -traceback -fp-model strict -ftrapuv -check all,noarg_temp_created -fpe-all0 -ftz -init=arrays,snan,huge
%FFLAGS %FCFLAGS
%LD mpifort
%LDFLAGS
%FPPFLAGS -P -traditional
%AR ar
%ARFLAGS rs
%MK gmake
%USER_INC %XIOS_INC %OASIS_INC %NCDF_INC
%USER_LIB %XIOS_LIB %OASIS_LIB %NCDF_LIB
%CC mpicc
%CFLAGS -O0
arch/MERCATOR/arch-X64_AA_INTEL_XMPI.fcm 0 → 100644
View file @ d81fb79c
# compiler options for AA (using INTEL compiler & HPCX OpenMPI)
#
# module use /home/ar0s/modules
# module load prgenv/intel intel/2021.4.0 hpcx-openmpi/2.9.0 hdf5-parallel/1.10.6 netcdf4-parallel/4.7.4 xios/trunk/rev2320-xmpi
#
#
# NCDF_INC netcdf4 include file
# NCDF_LIB netcdf4 library
# XIOS_INC xios include file (taken into accound only if key_xios is activated)
# XIOS_LIB xios library (taken into accound only if key_xios is activated)
# OASIS_INC oasis include file (taken into accound only if key_oasis3 is activated)
# OASIS_LIB oasis library (taken into accound only if key_oasis3 is activated)
#
# FC Fortran compiler command
# FCFLAGS Fortran compiler flags
# FFLAGS Fortran 77 compiler flags
# LD linker
# LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries
# FPPFLAGS pre-processing flags
# AR assembler
# ARFLAGS assembler flags
# MK make
# USER_INC complete list of include files
# USER_LIB complete list of libraries to pass to the linker
# CC C compiler used to compile conv for AGRIF
# CFLAGS compiler flags used with CC
#
# Note that:
# - unix variables "$..." are accpeted and will be evaluated before calling fcm.
# - fcm variables are starting with a % (and not a $)
#
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
# All NETCDF and HDF paths are empty as they are automatically defined through environment
# variables by the load of modules
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
#
#
%NCDF_INC ${NETCDF4_INCLUDE}
%NCDF_LIB ${NETCDF4_LIB} ${HDF5_LIB}
%XIOS_INC -I${XIOS_INC}
%XIOS_LIB -L${XIOS_LIB} -lxios -lstdc++
%OASIS_INC -I${OASIS_DIR}/build/lib/mct -I${OASIS_DIR}/build/lib/psmile.MPI1
%OASIS_LIB -L${OASIS_DIR}/lib -lpsmile.MPI1 -lmct -lmpeu -lscrip
%CPP cpp
%FC mpifort -c -cpp
%FCFLAGS -march=core-avx2 -i4 -r8 -O3 -fp-model strict -fno-alias -align array64byte
%FFLAGS %FCFLAGS
%LD mpifort
%LDFLAGS
%FPPFLAGS -P -traditional
%AR ar
%ARFLAGS rs
%MK gmake
%USER_INC %XIOS_INC %OASIS_INC %NCDF_INC
%USER_LIB %XIOS_LIB %OASIS_LIB %NCDF_LIB
%CC mpicc
%CFLAGS -O0
arch/MERCATOR/arch-X64_BELENOS_INTEL_IMPI.fcm
View file @ d81fb79c
# compiler options for BELENOS/TARANIS (using INTEL compiler)
# compiler options for BELENOS/TARANIS (using INTEL compiler + INTEL MPI)
#
# INTEL_IMPI (XIOS-2.5)
# intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2 xios-2.5_rev1903
# --------------------------------
# INTEL_IMPI (NEMO 4.0 + XIOS-2.5)
# --------------------------------
# module use /home/ext/mr/smer/samsong/modules
# module load intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2 xios/2.5/rev1903
#
# INTEL_IMPI (XIOS-TRUNK must be compiled)
# gcc/9.2.0 intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2
# ----------------------------------
# INTEL_IMPI (NEMO 4.2 + XIOS-TRUNK)
# ----------------------------------
# module use /home/ext/mr/smer/samsong/modules
# module load gcc/9.2.0 intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2 xios/trunk/rev2134
#
#
# NCDF_INC netcdf4 include file
......@@ -44,7 +50,7 @@
%NCDF_LIB -L${NETCDF_LIB} -lnetcdff -lnetcdf -L${PHDF5_LIB_DIR} -lhdf5_hl -lhdf5
%XIOS_INC -I${XIOS_INC}
%XIOS_LIB -L${XIOS_LIB} -lxios -lstdc++
%OASIS_INC -I${OASIS_DIR}/build/lib/mct -I${OASIS_DIR}/build/lib/psmile.MPI1
%OASIS_INC -I${OASIS_DIR}/include
%OASIS_LIB -L${OASIS_DIR}/lib -lpsmile.MPI1 -lmct -lmpeu -lscrip
%CPP cpp
......
arch/MERCATOR/arch-X64_BELENOS_INTEL_IMPI_DEBUG.fcm
View file @ d81fb79c
# compiler options for BELENOS/TARANIS (using INTEL compiler)
#
# INTEL_IMPI (XIOS-2.5)
# intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2 xios-2.5_rev1903
# --------------------------------
# INTEL_IMPI (NEMO 4.0 + XIOS-2.5)
# --------------------------------
# module use /home/ext/mr/smer/samsong/modules
# module load intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2 xios/2.5/rev1903
#
# INTEL_IMPI (XIOS-TRUNK must be compiled)
# gcc/9.2.0 intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2
# ----------------------------------
# INTEL_IMPI (NEMO 4.2 + XIOS-TRUNK)
# ----------------------------------
# module use /home/ext/mr/smer/samsong/modules
# module load gcc/9.2.0 intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2 xios/trunk/rev2134
#
#
# NCDF_INC netcdf4 include file
......@@ -44,7 +50,7 @@
%NCDF_LIB -L${NETCDF_LIB} -lnetcdff -lnetcdf -L${PHDF5_LIB_DIR} -lhdf5_hl -lhdf5
%XIOS_INC -I${XIOS_INC}
%XIOS_LIB -L${XIOS_LIB} -lxios -lstdc++
%OASIS_INC -I${OASIS_DIR}/build/lib/mct -I${OASIS_DIR}/build/lib/psmile.MPI1
%OASIS_INC -I${OASIS_DIR}/include
%OASIS_LIB -L${OASIS_DIR}/lib -lpsmile.MPI1 -lmct -lmpeu -lscrip
%CPP cpp
......
arch/MERCATOR/arch-X64_BELENOS_INTEL_MVAP.fcm 0 → 100644
View file @ d81fb79c
# compiler options for BELENOS/TARANIS (using INTEL compiler + MVAPICH2 MPI)
#
# --------------------------------
# INTEL_MVAP (NEMO 4.0 + XIOS-2.5)
# --------------------------------
# module use /home/ext/mr/smer/samsong/modules
# module load intel/2018.5.274 mvapich2-2.3.5 hdf5-1.8.18-mvapich2 netcdf-4.7.1-mvapich2 xios/2.5/rev1903-mvapich2
#
# ----------------------------------
# INTEL_MVAP (NEMO 4.2 + XIOS-TRUNK)
# ----------------------------------
# module use /home/ext/mr/smer/samsong/modules
# module load gcc/9.2.0 intel/2018.5.274 mvapich2-2.3.5 hdf5-1.8.18-mvapich2 netcdf-4.7.1-mvapich2 xios/trink/rev2134-mvapich2
#
#
# NCDF_INC netcdf4 include file
# NCDF_LIB netcdf4 library
# XIOS_INC xios include file (taken into accound only if key_xios is activated)
# XIOS_LIB xios library (taken into accound only if key_xios is activated)
# OASIS_INC oasis include file (taken into accound only if key_oasis3 is activated)
# OASIS_LIB oasis library (taken into accound only if key_oasis3 is activated)
#
# FC Fortran compiler command
# FCFLAGS Fortran compiler flags
# FFLAGS Fortran 77 compiler flags
# LD linker
# LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries
# FPPFLAGS pre-processing flags
# AR assembler
# ARFLAGS assembler flags
# MK make
# USER_INC complete list of include files
# USER_LIB complete list of libraries to pass to the linker
# CC C compiler used to compile conv for AGRIF
# CFLAGS compiler flags used with CC
#
# Note that:
# - unix variables "$..." are accpeted and will be evaluated before calling fcm.
# - fcm variables are starting with a % (and not a $)
#
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
# All NETCDF and HDF paths are empty as they are automatically defined through environment
# variables by the load of modules
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
#
#
%NCDF_INC -I${NETCDF_INC}
%NCDF_LIB -L${NETCDF_LIB} -lnetcdff -lnetcdf -L${PHDF5_LIB_DIR} -lhdf5_hl -lhdf5
%XIOS_INC -I${XIOS_INC}
%XIOS_LIB -L${XIOS_LIB} -lxios -lstdc++
%OASIS_INC -I${OASIS_DIR}/build/lib/mct -I${OASIS_DIR}/build/lib/psmile.MPI1
%OASIS_LIB -L${OASIS_DIR}/lib -lpsmile.MPI1 -lmct -lmpeu -lscrip
%CPP cpp
%FC mpifort -c -cpp
%FCFLAGS -march=core-avx2 -i4 -r8 -O3 -fp-model strict -fno-alias -align array64byte
%FFLAGS %FCFLAGS
%LD mpifort
%LDFLAGS
%FPPFLAGS -P -traditional
%AR ar
%ARFLAGS rs
%MK gmake
%USER_INC %XIOS_INC %OASIS_INC %NCDF_INC
%USER_LIB %XIOS_LIB %OASIS_LIB %NCDF_LIB
%CC mpicc
%CFLAGS -O0
arch/MERCATOR/arch-X64_BELENOS_INTEL_MVAP_DEBUG.fcm 0 → 100644
View file @ d81fb79c
# compiler options for BELENOS/TARANIS (using INTEL compiler + Intel MPI)
#
# --------------------------------
# INTEL_IMPI (NEMO 4.0 + XIOS-2.5)
# --------------------------------
# module use /home/ext/mr/smer/samsong/modules
# module load intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2 xios/2.5/rev1903
#
# ----------------------------------
# INTEL_IMPI (NEMO 4.2 + XIOS-TRUNK)
# ----------------------------------
# module use /home/ext/mr/smer/samsong/modules
# module load gcc/9.2.0 intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2 xios/trunk/rev2134
#
#
# NCDF_INC netcdf4 include file
# NCDF_LIB netcdf4 library
# XIOS_INC xios include file (taken into accound only if key_xios is activated)
# XIOS_LIB xios library (taken into accound only if key_xios is activated)
# OASIS_INC oasis include file (taken into accound only if key_oasis3 is activated)
# OASIS_LIB oasis library (taken into accound only if key_oasis3 is activated)
#
# FC Fortran compiler command
# FCFLAGS Fortran compiler flags
# FFLAGS Fortran 77 compiler flags
# LD linker
# LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries
# FPPFLAGS pre-processing flags
# AR assembler
# ARFLAGS assembler flags
# MK make
# USER_INC complete list of include files
# USER_LIB complete list of libraries to pass to the linker
# CC C compiler used to compile conv for AGRIF
# CFLAGS compiler flags used with CC
#
# Note that:
# - unix variables "$..." are accpeted and will be evaluated before calling fcm.
# - fcm variables are starting with a % (and not a $)
#
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
# All NETCDF and HDF paths are empty as they are automatically defined through environment
# variables by the load of modules
#---------------------------------------------------------------------------------------------
#---------------------------------------------------------------------------------------------
#
#
%NCDF_INC -I${NETCDF_INC}
%NCDF_LIB -L${NETCDF_LIB} -lnetcdff -lnetcdf -L${PHDF5_LIB_DIR} -lhdf5_hl -lhdf5
%XIOS_INC -I${XIOS_INC}
%XIOS_LIB -L${XIOS_LIB} -lxios -lstdc++
%OASIS_INC -I${OASIS_DIR}/include
%OASIS_LIB -L${OASIS_DIR}/lib -lpsmile.MPI1 -lmct -lmpeu -lscrip
%CPP cpp
%FC mpiifort -c -cpp
%FCFLAGS -march=core-avx2 -i4 -r8 -g -O0 -debug all -traceback -fp-model strict -ftrapuv -check all,noarg_temp_created -fpe-all0 -ftz -init=arrays,snan,huge
%FFLAGS %FCFLAGS
%LD mpiifort
%LDFLAGS
%FPPFLAGS -P -traditional
%AR ar
%ARFLAGS rs
%MK gmake
%USER_INC %XIOS_INC %OASIS_INC %NCDF_INC
%USER_LIB %XIOS_LIB %OASIS_LIB %NCDF_LIB
%CC mpiicc
%CFLAGS -O0
arch/MERCATOR/arch-X64_BELENOS_INTEL_OMPI.fcm
View file @ d81fb79c
# compiler options for BELENOS/TARANIS (using INTEL compiler)
# compiler options for BELENOS/TARANIS (using INTEL compiler + Open MPI)
#
# INTEL_OMPI (XIOS-2.5)
# intel/2018.5.274 openmpi/intel/4.0.2.2 hdf5-1.8.18-ompi netcdf-4.7.1-ompi_V2 xios-2.5_rev1903-ompi
# --------------------------------
# INTEL_OMPI (NEMO 4.0 + XIOS-2.5)
# --------------------------------
# module use /home/ext/mr/smer/samsong/modules
# module load intel/2018.5.274 openmpi/intel/4.0.2.2 hdf5-1.8.18-ompi netcdf-4.7.1-ompi_V2 xios/2.5/rev1903-ompi
#
# INTEL_MVAPICH2 (XIOS-2.5)
# intel/2018.5.274 mvapich2-2.3.5 hdf5-1.8.18-mvapich2 netcdf-4.7.1-mvapich2 xios-2.5_rev1903-mvapich2
# ----------------------------------
# INTEL_OMPI (NEMO 4.2 + XIOS-TRUNK)
# ----------------------------------
# module use /home/ext/mr/smer/samsong/modules
# module load gcc/9.2.0 intel/2018.5.274 openmpi/intel/4.0.2.2 hdf5-1.8.18-ompi netcdf-4.7.1-ompi_V2 xios/trunk/rev2134-ompi
#
#
# NCDF_INC netcdf4 include file
......
arch/MERCATOR/arch-X64_BELENOS_INTEL_OMPI_DEBUG.fcm 0 → 120000
View file @ d81fb79c
arch-X64_BELENOS_INTEL_IMPI_DEBUG.fcm
\ No newline at end of file
arch/arch-osx_gfortran.fcm
View file @ d81fb79c
......@@ -35,7 +35,7 @@
%CPP cpp -Dkey_nosignedzero
%FC mpif90
%FCFLAGS -fdefault-real-8 -O3 -funroll-all-loops -fcray-pointer -ffree-line-length-none
%FCFLAGS -fdefault-real-8 -O3 -funroll-all-loops -fcray-pointer -ffree-line-length-none -fallow-argument-mismatch
%FFLAGS %FCFLAGS
%LD %FC
%LDFLAGS
......
cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_cfg
View file @ d81fb79c
......@@ -117,6 +117,7 @@
!-----------------------------------------------------------------------
&namsbc_abl ! Atmospheric Boundary Layer formulation (ln_abl = T)
!-----------------------------------------------------------------------
cn_dom = 'dom_cfg_abl_L25Z10'
/
!-----------------------------------------------------------------------
&namtra_qsr ! penetrative solar radiation (ln_traqsr =T)
......
cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_top_cfg
View file @ d81fb79c
......@@ -113,8 +113,8 @@
sn_trcsbc(7) = 'dust.orca.new' , -1 , 'dustsi' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcsbc(14) = 'dust.orca.new' , -1 , 'dustfer' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcsbc(23) = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly' , '' , '' , ''
rn_trsfac(5) = 7.9258065e-02 ! ( 0.021 / 31. * 117 )
rn_trsfac(7) = 3.1316726e-01 ! ( 8.8 / 28.1 )
rn_trsfac(5) = 3.774194e-02 ! ( 1E-3 / 31. * 117 )
rn_trsfac(7) = 9.572954e-03 ! ( 8.8 / 28.1 )
rn_trsfac(14) = 6.2667860e-04 ! ( 0.035 / 55.85 )
rn_trsfac(23) = 5.2232143e-01 ! ( From kgN m-2 s-1 to molC l-1 ====> zfact = 7.3125/14 )
rn_sbc_time = 1. ! Time scaling factor for SBC and CBC data (seconds in a day)
......
cfgs/ORCA2_OFF_PISCES/EXPREF/namelist_top_cfg
View file @ d81fb79c
......@@ -113,8 +113,8 @@
sn_trcsbc(7) = 'dust.orca.new' , -1 , 'dustsi' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcsbc(14) = 'dust.orca.new' , -1 , 'dustfer' , .true. , .true. , 'yearly' , '' , '' , ''
sn_trcsbc(23) = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly' , '' , '' , ''
rn_trsfac(5) = 7.9258065e-02 ! ( 0.021 / 31. * 117 )
rn_trsfac(7) = 3.1316726e-01 ! ( 8.8 / 28.1 )
rn_trsfac(5) = 3.774194e-02 ! ( 1E-3 / 31. * 117 )
rn_trsfac(7) = 9.572954e-03 ! ( 8.8 / 28.1 )
rn_trsfac(14) = 6.2667860e-04 ! ( 0.035 / 55.85 )
rn_trsfac(23) = 5.2232143e-01 ! ( From kgN m-2 s-1 to molC l-1 ====> zfact = 7.3125/14 )
rn_sbc_time = 1. ! Time scaling factor for SBC and CBC data (seconds in a day)
......