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#!/bin/bash
############################################################
# Author : Simona Flavoni for NEMO
# Contact: sflod@locean-ipsl.upmc.fr
# 2013 : A.C. Coward added options for testing with XIOS in dettached mode
#
# sette.sh : principal script of SET TEsts for NEMO (SETTE)
# ----------------------------------------------------------------------
# NEMO/SETTE , NEMO Consortium (2010)
# Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
# ----------------------------------------------------------------------
#
#############################################################
#set -vx
set -o posix
#set -u
#set -e
# ===========
# DESCRIPTION
# ===========
#
# Variables to be checked by user:
#
# COMPILER : name of compiler as defined in NEMOGCM/ARCH directory
# BATCH_COMMAND_PAR : name of the command for submitting parallel batch jobs
# BATCH_COMMAND_SEQ : name of the command for submitting sequential batch jobs
# INTERACT_FLAG : flag to run in interactive mode "yes"
# to run in batch mode "no"
# MPIRUN_FLAG : flag to run in parallel (MPI) "yes"
# to run in sequential mode (NB_PROC = 1) "no"
# NUM_XIOSERVERS : number of stand-alone IO servers to employ
# set to zero if USING_MPMD="no"
#
# Principal script is sette.sh, that calls
#
# makenemo : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
# and links to nemo in ${CONFIG_NAME}/EXP00)
#
# param.cfg : sets and loads following directories:
# This will have been run by the parent sette.sh and values exported here
#
# FORCING_DIR : is the directory for forcing files (tarfile)
# INPUT_DIR : is the directory for input files storing
# TMPDIR : is the temporary directory (if needed)
# NEMO_VALIDATION_DIR : is the validation directory
#
# (NOTE: this file is the same for all configrations to be tested with sette)
#
# all_functions.sh : loads functions used by sette (note: new functions can be added here)
# set_namelist : function declared in all_functions that sets namelist parameters
# post_test_tidyup : creates validation storage directory and copies required output files
# (run.stat and ocean.output) in it after execution of test.
#
# VALIDATION tree is:
#
# NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
#
# prepare_exe_dir.sh : defines and creates directory where the test is executed
# execution directory takes name of TEST_NAME defined for every test
# in sette.sh. (each test in executed in its own directory)
#
# set_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
#
# clean_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
# ( not doing it could lead to false positive )
#
# prepare_job.sh : to generate the script run_job.sh
#
# fcm_job.sh : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
# see sette.sh and BATCH_TEMPLATE directory
#
# NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
# can be found paths to the input tar file)
# NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
# directory
# NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
# remain in ${NEW_CONF}/EXP00
#
# NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
# executed commands
#
# NOTE: if sette.sh is stopped in output.sette there is written the last command
# executed by sette.sh
#
# example use: ./sette.sh
#########################################################################################
#
# LOAD param value
SETTE_DIR=$(cd $(dirname "$0"); pwd)
MAIN_DIR=$(dirname $SETTE_DIR)
export BATCH_COMMAND_PAR=${BATCH_CMD}
export BATCH_COMMAND_SEQ=${BATCH_CMD}
export INTERACT_FLAG="no"
export MPIRUN_FLAG="yes"
#
# Settings which control the use of stand alone servers (only relevant if using xios)
#
export NUM_XIOSERVERS=4
export JOB_PREFIX=${JOB_PREFIX_MPMD}
#
if [ ${USING_MPMD} == "no" ]
then
export NUM_XIOSERVERS=0
export JOB_PREFIX=${JOB_PREFIX_NOMPMD}
fi
#
# Directory to run the tests
CONFIG_DIR0=${MAIN_DIR}/cfgs
TOOLS_DIR=${MAIN_DIR}/tools
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if [ -n "${CUSTOM_DIR}" ]; then
NEMO_REV=$( git rev-parse --short HEAD 2> /dev/null )
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if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM,,} =~ ("debug"|"dbg") ]]; then
export CMP_DIR=${CUSTOM_DIR}/${SETTE_SUB_VAL}_${NEMO_REV}_DEBUG
else
export CMP_DIR=${CUSTOM_DIR}/${SETTE_SUB_VAL}_${NEMO_REV}
fi
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fi
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# Copy job_batch_COMPILER file for specific compiler into job_batch_template
cd ${SETTE_DIR}
cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template || exit
# Description of available configurations:
# GYRE_PISCES :
# ORCA2_ICE_PISCES :
# ORCA2_OFF_PISCES :
# AMM12 :
# SAS : aka ORCA2_SAS_ICE
# ORCA2_ICE_OBS :
# AGRIF : AGRIF_DEMO: test AGRIF in a double zoom configuration in the nordic seas + 1 zoom in the eq. Pacific and
# AGRIF_DEMO_NOAGRIF: check that key_agrif without zoom = no key_agrif
# WED025 : regional configuration including sea-ice and tides (Spitzbergen)
. ./all_functions.sh
for config in ${TEST_CONFIGS[@]}
do
# -----------
# GYRE_PISCES
# -----------
if [ ${config} == "GYRE_PISCES" ] ; then
SETTE_CONFIG="GYRE_PISCES"${SETTE_STG}
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if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM,,} =~ ("debug"|"dbg") ]]
then
ITEND=12 # 1 day
else
ITEND=1080 # 90 days
fi
ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
cd ${MAIN_DIR}
#
# syncronisation if target directory/file exist (not done by makenemo)
sync_config GYRE_PISCES ${SETTE_CONFIG} 'cfgs'
clean_config GYRE_PISCES ${SETTE_CONFIG} 'cfgs'
#
# GYRE uses linssh so remove key_qco if added by default
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. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r GYRE_PISCES -t ${CMP_DIR:-${CONFIG_DIR0}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
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fi
if [ ${config} == "GYRE_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for GYRE_PISCES
export TEST_NAME="LONG"
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=8
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYREPIS_LONG\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
set_namelist namelist_cfg ln_linssh .true.
set_namelist namelist_cfg jpni 2
set_namelist namelist_cfg jpnj 4
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
export TEST_NAME="SHORT"
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYREPIS_SHORT\"
set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
set_namelist namelist_cfg ln_rstart .true.
set_namelist namelist_cfg nn_rstctl 2
set_namelist namelist_cfg ln_linssh .true.
set_namelist namelist_cfg jpni 2
set_namelist namelist_cfg jpnj 4
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist namelist_top_cfg ln_rsttr .true.
set_namelist namelist_top_cfg nn_rsttr 2
set_namelist namelist_cfg cn_ocerst_in \"GYREPIS_LONG_${ITRST}_restart\"
set_namelist namelist_top_cfg cn_trcrst_in \"GYREPIS_LONG_${ITRST}_restart_trc\"
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
for (( i=1; i<=$NPROC; i++)) ; do
L_NPROC=$(( $i - 1 ))
L_NPROC=`printf "%04d\n" ${L_NPROC}`
ln -sf ../LONG/GYREPIS_LONG_${ITRST}_restart_${L_NPROC}.nc .
ln -sf ../LONG/GYREPIS_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
done
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
if [ ${config} == "GYRE_PISCES" ] && [ ${DO_REPRO} == "1" ] ; then
## Reproducibility tests for GYRE_PISCES
export TEST_NAME="REPRO_2_4"
cd ${MAIN_DIR}
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=8
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYREPIS_48\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg ln_linssh .true.
set_namelist namelist_cfg jpni 2
set_namelist namelist_cfg jpnj 4
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
cd ${SETTE_DIR}
export TEST_NAME="REPRO_4_2"
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=8
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"GYREPIS_84\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg ln_linssh .true.
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 2
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
# -----------------
# ORCA2_ICE_PISCES
# -----------------
if [ ${config} == "ORCA2_ICE_PISCES" ] ; then
SETTE_CONFIG="ORCA2_ICE_PISCES"${SETTE_STG}
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if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM,,} =~ ("debug"|"dbg") ]]
then
ITEND=16 # 1 day
else
ITEND=992 # 62 days
fi
ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
cd ${MAIN_DIR}
#
# syncronisation if target directory/file exist (not done by makenemo)
sync_config ORCA2_ICE_PISCES ${SETTE_CONFIG} 'cfgs'
clean_config ORCA2_ICE_PISCES ${SETTE_CONFIG} 'cfgs'
#
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. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_ICE_PISCES -t ${CMP_DIR:-${CONFIG_DIR0}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
fi
if [ ${config} == "ORCA2_ICE_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for ORCA2_ICE_PISCES
export TEST_NAME="LONG"
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=32
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"O2L3P_LONG\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist namelist_cfg ln_use_calving .true.
set_namelist namelist_cfg ln_wave .true.
set_namelist namelist_cfg ln_cdgw .false.
set_namelist namelist_cfg ln_sdw .true.
set_namelist namelist_cfg ln_stcor .true.
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if [ ${USING_ABL} == "yes" ]; then
set_namelist namelist_cfg nn_date0 20130101
set_namelist namelist_cfg ln_blk .false.
set_namelist namelist_cfg ln_abl .true.
set_namelist namelist_cfg ln_tair_pot .true.
sed -i "/sn_wndi/s/u_10.15JUNE2009_fill/uwnd_ERAI_L25Z10_ORCA2_ana1d/; /sn_wndi/s/ 6./24./; /sn_wndi/s/U_10_MOD/uwnd/; \
/sn_wndi/s/true/false/; /sn_wndi/s/yearly/monthly/; /sn_wndi/s/weights_core2_orca2_bicub//" namelist_cfg
sed -i "/sn_wndj/s/v_10.15JUNE2009_fill/vwnd_ERAI_L25Z10_ORCA2_ana1d/; /sn_wndj/s/ 6./24./; /sn_wndj/s/V_10_MOD/vwnd/; \
/sn_wndj/s/true/false/; /sn_wndj/s/yearly/monthly/; /sn_wndj/s/weights_core2_orca2_bicub//" namelist_cfg
sed -i "/sn_tair/s/t_10.15JUNE2009_fill/tair_ERAI_L25Z10_ORCA2_ana1d/; /sn_tair/s/ 6./24./; /sn_tair/s/T_10_MOD/tair/; \
/sn_tair/s/true/false/; /sn_tair/s/yearly/monthly/; /sn_tair/s/weights_core2_orca2_bilin//" namelist_cfg
sed -i "/sn_humi/s/q_10.15JUNE2009_fill/humi_ERAI_L25Z10_ORCA2_ana1d/; /sn_humi/s/ 6./24./; /sn_humi/s/Q_10_MOD/humi/; \
/sn_humi/s/true/false/; /sn_humi/s/yearly/monthly/; /sn_humi/s/weights_core2_orca2_bilin//" namelist_cfg
fi
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#
set_namelist_opt namelist_cfg ln_icebergs ${USING_ICEBERGS} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_nnogather ${USING_NOGATHER} .true. .false.
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
#
set_namelist namelist_ice_cfg ln_icediachk .true.
set_namelist namelist_top_cfg ln_trcdta .false.
set_namelist namelist_top_cfg ln_trcbc .false.
# put ln_ironsed, ln_hydrofe to false
# if not you need input files, and for tests is not necessary
set_namelist namelist_pisces_cfg ln_varpar .false.
set_namelist namelist_pisces_cfg ln_ironsed .false.
set_namelist namelist_pisces_cfg ln_ironice .false.
set_namelist namelist_pisces_cfg ln_hydrofe .false.
# put ln_pisdmp to false : no restoring to global mean value
set_namelist namelist_pisces_cfg ln_pisdmp .false.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
export TEST_NAME="SHORT"
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"O2L3P_SHORT\"
set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
set_namelist namelist_cfg ln_rstart .true.
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set_namelist namelist_cfg ln_rstart_abl .true.
set_namelist namelist_cfg nn_rstctl 2
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist namelist_cfg nn_test_icebergs -1
set_namelist namelist_cfg ln_wave .true.
set_namelist namelist_cfg ln_cdgw .false.
set_namelist namelist_cfg ln_sdw .true.
set_namelist namelist_cfg ln_stcor .true.
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if [ ${USING_ABL} == "yes" ]; then
set_namelist namelist_cfg nn_date0 20130101
set_namelist namelist_cfg ln_blk .false.
set_namelist namelist_cfg ln_abl .true.
set_namelist namelist_cfg ln_tair_pot .true.
sed -i "/sn_wndi/s/u_10.15JUNE2009_fill/uwnd_ERAI_L25Z10_ORCA2_ana1d/; /sn_wndi/s/ 6./24./; /sn_wndi/s/U_10_MOD/uwnd/; \
/sn_wndi/s/true/false/; /sn_wndi/s/yearly/monthly/; /sn_wndi/s/weights_core2_orca2_bicub//" namelist_cfg
sed -i "/sn_wndj/s/v_10.15JUNE2009_fill/vwnd_ERAI_L25Z10_ORCA2_ana1d/; /sn_wndj/s/ 6./24./; /sn_wndj/s/V_10_MOD/vwnd/; \
/sn_wndj/s/true/false/; /sn_wndj/s/yearly/monthly/; /sn_wndj/s/weights_core2_orca2_bicub//" namelist_cfg
sed -i "/sn_tair/s/t_10.15JUNE2009_fill/tair_ERAI_L25Z10_ORCA2_ana1d/; /sn_tair/s/ 6./24./; /sn_tair/s/T_10_MOD/tair/; \
/sn_tair/s/true/false/; /sn_tair/s/yearly/monthly/; /sn_tair/s/weights_core2_orca2_bilin//" namelist_cfg
sed -i "/sn_humi/s/q_10.15JUNE2009_fill/humi_ERAI_L25Z10_ORCA2_ana1d/; /sn_humi/s/ 6./24./; /sn_humi/s/Q_10_MOD/humi/; \
/sn_humi/s/true/false/; /sn_humi/s/yearly/monthly/; /sn_humi/s/weights_core2_orca2_bilin//" namelist_cfg
fi
#
set_namelist_opt namelist_cfg ln_icebergs ${USING_ICEBERGS} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_nnogather ${USING_NOGATHER} .true. .false.
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
#
set_namelist namelist_ice_cfg ln_icediachk .true.
set_namelist namelist_top_cfg ln_rsttr .true.
set_namelist namelist_top_cfg nn_rsttr 2
set_namelist namelist_cfg cn_ocerst_in \"O2L3P_LONG_${ITRST}_restart\"
set_namelist namelist_cfg cn_icbrst_in \"O2L3P_LONG_${ITRST}_restart_icb\"
set_namelist namelist_top_cfg cn_trcrst_in \"O2L3P_LONG_${ITRST}_restart_trc\"
set_namelist namelist_ice_cfg cn_icerst_in \"O2L3P_LONG_${ITRST}_restart_ice\"
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set_namelist namelist_cfg cn_ablrst_in \"O2L3P_LONG_${ITRST}_restart_abl\"
set_namelist namelist_top_cfg ln_trcbc .false.
# put ln_ironsed, ln_hydrofe to false
# if not you need input files, and for tests is not necessary
set_namelist namelist_pisces_cfg ln_varpar .false.
set_namelist namelist_pisces_cfg ln_ironsed .false.
set_namelist namelist_pisces_cfg ln_ironice .false.
set_namelist namelist_pisces_cfg ln_hydrofe .false.
# put ln_pisdmp to false : no restoring to global mean value
set_namelist namelist_pisces_cfg ln_pisdmp .false.
for (( i=1; i<=$NPROC; i++)) ; do
L_NPROC=$(( $i - 1 ))
L_NPROC=`printf "%04d\n" ${L_NPROC}`
ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_${L_NPROC}.nc .
ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_ice_${L_NPROC}.nc .
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if [ ${USING_ABL} == "yes" ]; then
ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_abl_${L_NPROC}.nc .
fi
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if [ ${USING_ICEBERGS} == "yes" ]
then
ln -sf ../LONG/O2L3P_LONG_${ITRST}_restart_icb_${L_NPROC}.nc O2L3P_LONG_${ITRST}_restart_icb_${L_NPROC}.nc
fi
done
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
if [ ${config} == "ORCA2_ICE_PISCES" ] && [ ${DO_REPRO} == "1" ] ; then
## Reproducibility tests for ORCA2_ICE_PISCES
export TEST_NAME="REPRO_4_8"
cd ${MAIN_DIR}
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=32
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"O2L3P_48\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist namelist_cfg ln_wave .true.
set_namelist namelist_cfg ln_cdgw .false.
set_namelist namelist_cfg ln_sdw .true.
set_namelist namelist_cfg ln_stcor .true.
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if [ ${USING_ABL} == "yes" ]; then
set_namelist namelist_cfg nn_date0 20130101
set_namelist namelist_cfg ln_blk .false.
set_namelist namelist_cfg ln_abl .true.
set_namelist namelist_cfg ln_tair_pot .true.
sed -i "/sn_wndi/s/u_10.15JUNE2009_fill/uwnd_ERAI_L25Z10_ORCA2_ana1d/; /sn_wndi/s/ 6./24./; /sn_wndi/s/U_10_MOD/uwnd/; \
/sn_wndi/s/true/false/; /sn_wndi/s/yearly/monthly/; /sn_wndi/s/weights_core2_orca2_bicub//" namelist_cfg
sed -i "/sn_wndj/s/v_10.15JUNE2009_fill/vwnd_ERAI_L25Z10_ORCA2_ana1d/; /sn_wndj/s/ 6./24./; /sn_wndj/s/V_10_MOD/vwnd/; \
/sn_wndj/s/true/false/; /sn_wndj/s/yearly/monthly/; /sn_wndj/s/weights_core2_orca2_bicub//" namelist_cfg
sed -i "/sn_tair/s/t_10.15JUNE2009_fill/tair_ERAI_L25Z10_ORCA2_ana1d/; /sn_tair/s/ 6./24./; /sn_tair/s/T_10_MOD/tair/; \
/sn_tair/s/true/false/; /sn_tair/s/yearly/monthly/; /sn_tair/s/weights_core2_orca2_bilin//" namelist_cfg
sed -i "/sn_humi/s/q_10.15JUNE2009_fill/humi_ERAI_L25Z10_ORCA2_ana1d/; /sn_humi/s/ 6./24./; /sn_humi/s/Q_10_MOD/humi/; \
/sn_humi/s/true/false/; /sn_humi/s/yearly/monthly/; /sn_humi/s/weights_core2_orca2_bilin//" namelist_cfg
fi
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set_namelist_opt namelist_cfg ln_icebergs ${USING_ICEBERGS} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_nnogather ${USING_NOGATHER} .true. .false.
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
set_namelist namelist_top_cfg ln_trcdta .false.
set_namelist namelist_top_cfg ln_trcbc .false.
# put ln_ironsed, ln_hydrofe to false
# if not you need input files, and for tests is not necessary
set_namelist namelist_pisces_cfg ln_varpar .false.
set_namelist namelist_pisces_cfg ln_ironsed .false.
set_namelist namelist_pisces_cfg ln_ironice .false.
set_namelist namelist_pisces_cfg ln_hydrofe .false.
# put ln_pisdmp to false : no restoring to global mean value
set_namelist namelist_pisces_cfg ln_pisdmp .false.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
cd ${SETTE_DIR}
export TEST_NAME="REPRO_8_4"
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=32
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"O2L3P_84\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg jpni 8
set_namelist namelist_cfg jpnj 4
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist namelist_cfg ln_wave .true.
set_namelist namelist_cfg ln_cdgw .false.
set_namelist namelist_cfg ln_sdw .true.
set_namelist namelist_cfg ln_stcor .true.
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if [ ${USING_ABL} == "yes" ]; then
set_namelist namelist_cfg nn_date0 20130101
set_namelist namelist_cfg ln_blk .false.
set_namelist namelist_cfg ln_abl .true.
set_namelist namelist_cfg ln_tair_pot .true.
sed -i "/sn_wndi/s/u_10.15JUNE2009_fill/uwnd_ERAI_L25Z10_ORCA2_ana1d/; /sn_wndi/s/ 6./24./; /sn_wndi/s/U_10_MOD/uwnd/; \
/sn_wndi/s/true/false/; /sn_wndi/s/yearly/monthly/; /sn_wndi/s/weights_core2_orca2_bicub//" namelist_cfg
sed -i "/sn_wndj/s/v_10.15JUNE2009_fill/vwnd_ERAI_L25Z10_ORCA2_ana1d/; /sn_wndj/s/ 6./24./; /sn_wndj/s/V_10_MOD/vwnd/; \
/sn_wndj/s/true/false/; /sn_wndj/s/yearly/monthly/; /sn_wndj/s/weights_core2_orca2_bicub//" namelist_cfg
sed -i "/sn_tair/s/t_10.15JUNE2009_fill/tair_ERAI_L25Z10_ORCA2_ana1d/; /sn_tair/s/ 6./24./; /sn_tair/s/T_10_MOD/tair/; \
/sn_tair/s/true/false/; /sn_tair/s/yearly/monthly/; /sn_tair/s/weights_core2_orca2_bilin//" namelist_cfg
sed -i "/sn_humi/s/q_10.15JUNE2009_fill/humi_ERAI_L25Z10_ORCA2_ana1d/; /sn_humi/s/ 6./24./; /sn_humi/s/Q_10_MOD/humi/; \
/sn_humi/s/true/false/; /sn_humi/s/yearly/monthly/; /sn_humi/s/weights_core2_orca2_bilin//" namelist_cfg
fi
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set_namelist_opt namelist_cfg ln_icebergs ${USING_ICEBERGS} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_nnogather ${USING_NOGATHER} .true. .false.
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
set_namelist namelist_top_cfg ln_trcdta .false.
set_namelist namelist_top_cfg ln_trcbc .false.
# put ln_ironsed, ln_hydrofe to false
# if not you need input files, and for tests is not necessary
set_namelist namelist_pisces_cfg ln_varpar .false.
set_namelist namelist_pisces_cfg ln_ironsed .false.
set_namelist namelist_pisces_cfg ln_ironice .false.
set_namelist namelist_pisces_cfg ln_hydrofe .false.
# put ln_pisdmp to false : no restoring to global mean value
set_namelist namelist_pisces_cfg ln_pisdmp .false.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
# ----------------
# ORCA2_OFF_PISCES
# ----------------
if [ ${config} == "ORCA2_OFF_PISCES" ] ; then
SETTE_CONFIG="ORCA2_OFF_PISCES"${SETTE_STG}
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if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM,,} =~ ("debug"|"dbg") ]]
then
ITEND=16 # 4 days
else
ITEND=380 # 95 days
fi
ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
cd ${MAIN_DIR}
#
# syncronisation if target directory/file exist (not done by makenemo)
sync_config ${SETTE_CONFIG} ORCA2_OFF_PISCES_ST 'cfgs'
clean_config ${SETTE_CONFIG} ORCA2_OFF_PISCES_ST 'cfgs'
#
# ORCA2_OFF_PISCES uses linssh so remove key_qco if added by default
Guillaume Samson
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. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_OFF_PISCES -t ${CMP_DIR:-${CONFIG_DIR0}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
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fi
if [ ${config} == "ORCA2_OFF_PISCES" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for ORCA2_OFF_PISCES
export TEST_NAME="LONG"
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=32
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"OFFP_LONG\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist namelist_cfg ln_qsr_rgb .true.
set_namelist namelist_top_cfg ln_trcdta .false.
set_namelist namelist_top_cfg ln_trcbc .false.
# put ln_ironsed, ln_hydrofe to false
# if not you need input files, and for tests is not necessary
set_namelist namelist_pisces_cfg ln_varpar .false.
set_namelist namelist_pisces_cfg ln_ironsed .false.
set_namelist namelist_pisces_cfg ln_ironice .false.
set_namelist namelist_pisces_cfg ln_hydrofe .false.
# put ln_pisdmp to false : no restoring to global mean value
set_namelist namelist_pisces_cfg ln_pisdmp .false.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
export TEST_NAME="SHORT"
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"OFFP_SHORT\"
set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist namelist_cfg ln_qsr_rgb .true.
set_namelist namelist_top_cfg ln_rsttr .true.
set_namelist namelist_top_cfg nn_rsttr 2
set_namelist namelist_top_cfg cn_trcrst_in \"OFFP_LONG_${ITRST}_restart_trc\"
for (( i=1; i<=$NPROC; i++)) ; do
L_NPROC=$(( $i - 1 ))
L_NPROC=`printf "%04d\n" ${L_NPROC}`
ln -sf ../LONG/OFFP_LONG_${ITRST}_restart_trc_${L_NPROC}.nc .
done
set_namelist namelist_top_cfg ln_trcbc .false.
# put ln_ironsed, ln_hydrofe to false
# if not you need input files, and for tests is not necessary
set_namelist namelist_pisces_cfg ln_varpar .false.
set_namelist namelist_pisces_cfg ln_ironsed .false.
set_namelist namelist_pisces_cfg ln_ironice .false.
set_namelist namelist_pisces_cfg ln_hydrofe .false.
# put ln_pisdmp to false : no restoring to global mean value
set_namelist namelist_pisces_cfg ln_pisdmp .false.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
if [ ${config} == "ORCA2_OFF_PISCES" ] && [ ${DO_REPRO} == "1" ] ; then
## Reproducibility tests for ORCA2_OFF_PISCES
export TEST_NAME="REPRO_4_8"
cd ${MAIN_DIR}
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=32
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"OFFP_48\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist namelist_cfg ln_qsr_rgb .true.
set_namelist namelist_top_cfg ln_trcdta .false.
set_namelist namelist_top_cfg ln_trcbc .false.
# put ln_ironsed, ln_hydrofe to false
# if not you need input files, and for tests is not necessary
set_namelist namelist_pisces_cfg ln_varpar .false.
set_namelist namelist_pisces_cfg ln_ironsed .false.
set_namelist namelist_pisces_cfg ln_ironice .false.
set_namelist namelist_pisces_cfg ln_hydrofe .false.
# put ln_pisdmp to false : no restoring to global mean value
set_namelist namelist_pisces_cfg ln_pisdmp .false.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
cd ${SETTE_DIR}
export TEST_NAME="REPRO_8_4"
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=32
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"OFFP_84\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg jpni 8
set_namelist namelist_cfg jpnj 4
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
set_namelist namelist_cfg ln_qsr_rgb .true.
set_namelist namelist_top_cfg ln_trcdta .false.
set_namelist namelist_top_cfg ln_trcbc .false.
# put ln_ironsed, ln_hydrofe to false
# if not you need input files, and for tests is not necessary
set_namelist namelist_pisces_cfg ln_varpar .false.
set_namelist namelist_pisces_cfg ln_ironsed .false.
set_namelist namelist_pisces_cfg ln_ironice .false.
set_namelist namelist_pisces_cfg ln_hydrofe .false.
# put ln_pisdmp to false : no restoring to global mean value
set_namelist namelist_pisces_cfg ln_pisdmp .false.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
# -----
# AMM12
# -----
if [ ${config} == "AMM12" ] ; then
SETTE_CONFIG="AMM12"${SETTE_STG}
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if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM,,} =~ ("debug"|"dbg") ]]
then
ITEND=12 # 3 h
else
ITEND=576 # 4 days
fi
ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
cd ${MAIN_DIR}
#
# syncronisation if target directory/file exist (not done by makenemo)
sync_config AMM12 ${SETTE_CONFIG} 'cfgs'
clean_config AMM12 ${SETTE_CONFIG} 'cfgs'
#
Guillaume Samson
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. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r AMM12 -t ${CMP_DIR:-${CONFIG_DIR0}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
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fi
if [ ${config} == "AMM12" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests for AMM12
export TEST_NAME="LONG"
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=32
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"AMM12_LONG\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
export TEST_NAME="SHORT"
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"AMM12_SHORT\"
set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg ln_rstart .true.
set_namelist namelist_cfg nn_rstctl 2
set_namelist namelist_cfg cn_ocerst_in \"AMM12_LONG_${ITRST}_restart\"
set_namelist namelist_cfg nn_date0 20120102
for (( i=1; i<=$NPROC; i++)) ; do
L_NPROC=$(( $i - 1 ))
L_NPROC=`printf "%04d\n" ${L_NPROC}`
ln -sf ../LONG/AMM12_LONG_${ITRST}_restart_${L_NPROC}.nc .
done
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
if [ ${config} == "AMM12" ] && [ ${DO_REPRO} == "1" ] ; then
## Reproducibility tests for AMM12
export TEST_NAME="REPRO_8_4"
cd ${MAIN_DIR}
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=32
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"AMM12_84\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg jpni 8
set_namelist namelist_cfg jpnj 4
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
cd ${SETTE_DIR}
export TEST_NAME="REPRO_4_8"
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"AMM12_48\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
# ---------
# ORCA2_SAS_ICE
# ---------
if [ ${config} == "SAS" ] ; then
SETTE_CONFIG="ORCA2_SAS_ICE"${SETTE_STG}
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if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM,,} =~ ("debug"|"dbg") ]]
then
ITEND=16 # 1 day
else
ITEND=256 # 16 days
fi
ITRST=$( printf "%08d" $(( ${ITEND} / 2 )) )
cd ${MAIN_DIR}
#
# syncronisation if target directory/file exist (not done by makenemo)
sync_config ORCA2_SAS_ICE ${SETTE_CONFIG} 'cfgs'
clean_config ORCA2_SAS_ICE ${SETTE_CONFIG} 'cfgs'
#
# ORCA2_SAS_ICE uses linssh so remove key_qco if added by default
Guillaume Samson
committed
. ./makenemo -m ${CMP_NAM} -n ${SETTE_CONFIG} -r ORCA2_SAS_ICE -t ${CMP_DIR:-${CONFIG_DIR0}} -k 0 ${NEMO_DEBUG} -j ${CMPL_CORES} add_key "${ADD_KEYS/key_qco/}" del_key "${DEL_KEYS}"
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fi
if [ ${config} == "SAS" ] && [ ${DO_RESTART} == "1" ] ; then
## Restartability tests
export TEST_NAME="LONG"
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=32
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"SAS\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_ice_cfg ln_icediachk .true.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
export TEST_NAME="SHORT"
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"SAS\"
set_namelist namelist_cfg nn_it000 $(( ${ITEND} / 2 + 1 ))
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg nn_stock $(( ${ITEND} / 2 ))
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist namelist_cfg ln_rstart .true.
set_namelist namelist_cfg nn_rstctl 2
set_namelist namelist_cfg nn_date0 010109
set_namelist namelist_cfg cn_ocerst_in \"SAS_${ITRST}_restart\"
set_namelist namelist_ice_cfg cn_icerst_in \"SAS_${ITRST}_restart_ice\"
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
for (( i=1; i<=$NPROC; i++)) ; do
L_NPROC=$(( $i - 1 ))
L_NPROC=`printf "%04d\n" ${L_NPROC}`
ln -sf ../LONG/SAS_${ITRST}_restart_${L_NPROC}.nc .
ln -sf ../LONG/SAS_${ITRST}_restart_ice_${L_NPROC}.nc .
done
cd ${SETTE_DIR}
. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
cd ${SETTE_DIR}
. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
fi
if [ ${config} == "SAS" ] && [ ${DO_REPRO} == "1" ] ; then
## Reproducibility tests
Guillaume Samson
committed
if [[ -n "${NEMO_DEBUG}" || ${CMP_NAM,,} =~ ("debug"|"dbg") ]]
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then
ITEND=16 # 1 day
else
ITEND=80 # 5 days
fi
export TEST_NAME="REPRO_4_8"
cd ${MAIN_DIR}
cd ${SETTE_DIR}
. ./prepare_exe_dir.sh
set_valid_dir
clean_valid_dir
JOB_FILE=${EXE_DIR}/run_job.sh
NPROC=32
if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
cd ${EXE_DIR}
set_namelist namelist_cfg cn_exp \"SAS_48\"
set_namelist namelist_cfg nn_it000 1
set_namelist namelist_cfg nn_itend ${ITEND}
set_namelist namelist_cfg jpni 4
set_namelist namelist_cfg jpnj 8
set_namelist namelist_cfg sn_cfctl%l_runstat .true.
set_namelist_opt namelist_cfg ln_timing ${USING_TIMING} .true. .false.
set_namelist_opt namelist_cfg nn_hls ${USING_EXTRA_HALO} 2 1
set_namelist_opt namelist_cfg nn_comm ${USING_COLLECTIVES} 2 1
set_namelist_opt namelist_cfg ln_tile ${USING_TILING} .true. .false.
set_xio_using_server iodef.xml ${USING_MPMD}
cd ${SETTE_DIR}
. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}