add missing changes and introduce extlinks macro to include http links to merge requests

source/changes.rst

@@ -6,45 +6,47 @@ List of the main bugfixes in the new 4.2.1 release - March 2023
 
 **KERNEL**
 
-- FCT was not monotonic with non-linear free surface (!191) 
-- Fix emp initial value if salinity relaxation is not used (!221)
-- TKE boundary condition in GLS was wrong with iceshelves cavities (!215)
-- Model initialization in coupled configurations fixed (!151)
-- ABL model was not working with waves options (!144)
-- Spitz 12 configuration namelists have been updated (!175)
-- Bugfix and new diagnostics in OSMOSIS vertical mixing scheme (!172, !168)
-- CPL_OASIS test case has been updated (!111)
+- FCT was not monotonic with non-linear free surface (:mergereq:`191`) 
+- Fix emp initial value if salinity relaxation is not used (:mergereq:`221`)
+- TKE boundary condition in GLS was wrong with iceshelves cavities (:mergereq:`215`)
+- Model initialization in coupled configurations fixed (:mergereq:`151`)
+- ABL model was not working with waves options (:mergereq:`144`)
+- Spitz 12 configuration namelists have been updated (`!175`)
+- Bugfix and new diagnostics in OSMOSIS vertical mixing scheme (:mergereq:`172`, :mergereq:`168`)
+- CPL_OASIS test case has been updated (:mergereq:`111`)
 
 **Sea-ice SI3**
 
-- Surface roughness can now be ice-thickness dependant in GLS and TKE scheme (!49)
-- A bug in Rothrock ice strength has been fixed (!139)
+- Surface roughness can now be ice-thickness dependant in GLS and TKE scheme (:mergereq:`49`)
+- A bug in Rothrock ice strength has been fixed (:mergereq:`139`)
 
 **High Performance Computing (HPC)**
 
-- Enable NEMO compilation using single-precision variable (!204) 
-- Fix NEMO compilation when using MPI2 option (!97)
+- Enable NEMO compilation using single-precision variable (:mergereq:`204`) 
+- Fix NEMO compilation when using MPI2 option (:mergereq:`97`)
 
 **AGRIF zooms**
 
-- Correct freshwater budget computation when using  AGRIF zooms (!162)
-- Fixed issue with sea surface height (ssh) offset with sea-ice and AGRIF (!128)
+- Correct freshwater budget computation when using  AGRIF zooms (:mergereq:`162`)
+- Fixed issue with sea surface height (ssh) offset with sea-ice and AGRIF (:mergereq:`128`)
 
 **Tracers and biogeochemistry TOP**
 
 - PISCES consolidation and robustness (reproducibility, bugfix corrections, memory optimisation)
-- Revised TOP restart file creation and fix time index when Euler forward time integration is used (!96)
-- Create a common routine to handle bottom boundary layer conditions (trabbl) for both active and passive tracers (!187) 
-- Bugfix on Offline transport in TOP when using  linear surface option (!141)
-- Boundary conditions were missing in 1D configurations with TOP (!103)
+- Revised TOP restart file creation and fix time index when Euler forward time integration is used (:mergereq:`96`)
+- Create a common routine to handle bottom boundary layer conditions (trabbl) for both active and passive tracers (:mergereq:`187`) 
+- Bugfix on Offline transport in TOP when using  linear surface option (:mergereq:`141`)
+- Boundary conditions were missing in 1D configurations with TOP (:mergereq:`103`)
+- Improve the use of multiple BDY segments and tracer inputs fields within TOP (:mergereq:`231`)
 
-- Surface roughness can now be ice-thickness dependant in GLS and TKE scheme (!49)
-- A bug in Rothrock ice strength has been fixed (!139)
+**Input Output Manager**
+
+- Enable the use of XIOS3 to create outputs and handle restart files by means of `key_xios3` (:mergereq:`267`)
 
 **Diagnostics**
 
-- 26/28 isotherm depth calculation fixed (!255)
-- Some dia_ar5_hst outputs were wrong (!140)
+- 26/28 isotherm depth calculation fixed (:mergereq:`255`)
+- Some dia_ar5_hst outputs were wrong (:mergereq:`140`)
 
 ###################
 Changes since 4.0.7

source/conf.py

@@ -110,6 +110,7 @@ extlinks = {
 	'website' : ('https://www.nemo-ocean.eu/%s'             , None),
 	'zenodo'  : ('https://zenodo.org/publication/%s'        , None),
 	'gitlab'  : (nemo_repo + '%s'                           , None),
+        'mergereq': (nemo_repo + '/merge_requests/%s'           , '!%s'),
 	'coderepo': (nemo_repo + '/tree/'+ version + '%s'       , None),
 	'tarrepo' : (nemo_repo + '/releases/'+ version + '%s'   , None),
 }