Resolve "activate TOP code in C1D reference configuration"

Closes #509

See merge request !644

Resolve "Fix the call of boundary conditions for passive tracers"

Closes #503

See merge request !637

Resolve "Reactivate the use of potential density needed for BGC"

Closes #502

See merge request !636

Resolve "Revision or removal of the C1D_ASICS test case"

Closes #355

See merge request !557

Resolve "fix OASIS-XIOS3 initialization"

Closes #500

See merge request !633

Resolve "IAU bug fixes for RK3"

Closes #445

See merge request !553

Resolve "make TSUNAMI working again"

Closes #485

See merge request !626

Resolve "Robustness of OSMOSIS diagnostic output" ('main')

See merge request !622

Resolve "remove ln_linssh in namelist_cfg files"

Closes #497

See merge request !623

Resolve "clean up reference to step.F90 in comments"

Closes #495

See merge request !619

Merge branch '482-remove-local-working-arrays-that-are-no-longer-used-after-the-removal-of-key_rk3' into 'main'

Resolve "Remove local working arrays and subroutine arguments that are no longer used after the removal of MLF"

Closes #482

See merge request !617

Resolve "Remove local working arrays and subroutine arguments that are no longer used after the removal of MLF"

Resolve "Trends diagnostics may not be scientifically correct in RK3"

Closes #487

See merge request !614

Resolve "diawri without xios is not working for A2D(0)"

Closes #492

See merge request !611

Resolve "remove 2 x dt use"

Closes #488

See merge request !613

Resolve "Tidy up comments following removal of MLF"

Closes #483

See merge request !610

Resolve "clean2D/3D coupling"

Closes #489

See merge request !609

Resolve "remove Asselin Filter related routines"

Closes #473

See merge request !607

Resolve "Remove ln_1st_euler/l_1st_euler with RK3"

Closes #480

See merge request !605