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Resolve "Minor PISCES Improvements"

Merged Resolve "Minor PISCES Improvements"
578-minor-pisces-improvements-3 into main
Merged Renaud Person requested to merge 578-minor-pisces-improvements-3 into main
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cfgs/SHARED/namelist_pisces_ref
+ 34
− 34
@@ -81,7 +81,7 @@
concdnh4 = 3.E-6 ! NH4 half saturation for diatoms
concnfer = 1.5E-9 ! Iron half saturation for phyto
concdfer = 4.5E-9 ! Iron half saturation for diatoms
concbfe = 5.E-11 ! Iron half-saturation for DOC remin.
concbfe = 4.E-11 ! Iron half-saturation for DOC remin.
concbnh4 = 3.E-7 ! NH4 half saturation for DOC remin.
concbno3 = 3.E-7 ! Nitrate half saturation for DOC remin.
xsizedia = 1.E-6 ! Minimum size criteria for diatoms
@@ -112,20 +112,20 @@
concnfer = 3E-9 ! Iron half saturation for phyto
concpfer = 1E-9 ! Iron half saturation for picophytoplankton
concdfer = 4.5E-9 ! Iron half saturation for diatoms
concbfe = 5E-11 ! Half-saturation for Fe limitation of Bacteria
concbfe = 4E-11 ! Half-saturation for Fe limitation of Bacteria
concbnh4 = 3.E-7 ! NH4 half saturation for phyto
concbno3 = 3.E-7 ! Phosphate half saturation for diatoms
concbpo4 = 3.E-7 ! Phosphate half saturation for bacteria
xsizedia = 1.E-6 ! Minimum size criteria for diatoms
xsizephy = 1.E-6 ! Minimum size criteria for phyto
xsizepic = 5.E-7 ! Minimum size criteria for picophyto
xsizern = 3.0 ! Size ratio for nanophytoplankton
xsizerp = 2.0 ! Size ratio for picophytoplankton
xsizern = 2.0 ! Size ratio for nanophytoplankton
xsizerp = 1.5 ! Size ratio for picophytoplankton
xsizerd = 4.0 ! Size ratio for diatoms
xksi1 = 8.E-6 ! half saturation constant for Si uptake
xksi2 = 20E-6 ! half saturation constant for Si/C
xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization
caco3r = 0.4 ! mean rain ratio
caco3r = 0.2 ! mean rain ratio
oxymin = 1.E-6 ! Half-saturation constant for anoxia
ratchl = 10.0 ! C associated with Chlorophyll
/
@@ -138,7 +138,7 @@
qnnmin = 0.69 ! Minimal N quota for nano
qnnmax = 1.35 ! Maximal N quota for nano
qpnmin = 0.24 ! Minimal P quota for nano
qpnmax = 1.3 ! Maximal P quota for nano
qpnmax = 1.35 ! Maximal P quota for nano
qnpmin = 0.9 ! Minimal N quota for pico
qnpmax = 1.35 ! Maximal N quota for pico
qppmin = 0.2 ! Minimal P quota for pico
@@ -174,15 +174,15 @@
!-----------------------------------------------------------------------
&namp4zprod ! parameters for phytoplankton growth for PISCES std - ln_p4z
!-----------------------------------------------------------------------
pislopen = 3. ! P-I slope
pisloped = 3. ! P-I slope for diatoms
pislopen = 3.5 ! P-I slope
pisloped = 3.5 ! P-I slope for diatoms
excretn = 0.05 ! excretion ratio of phytoplankton
excretd = 0.05 ! excretion ratio of diatoms
bresp = 0.03 ! Basal respiration rate
chlcmin = 0.0025 ! Minimum Chl/c in phytoplankton
fecnm = 60E-6 ! Maximum Fe/C in nanophytoplankton
fecdm = 60E-6 ! Maximum Fe/C in diatoms
grosip = 0.13 ! mean Si/C ratio
grosip = 0.11 ! mean Si/C ratio
/
!-----------------------------------------------------------------------
&namp5zprod ! parameters for phytoplankton growth for PISCES quota- ln_p5z
@@ -195,7 +195,7 @@
excretd = 0.05 ! excretion ratio of diatoms
bresp = 0.03 ! Basal respiration rate
chlcmin = 0.0025 ! Minimum Chl/c in phytoplankton
grosip = 0.11 ! mean Si/C ratio
grosip = 0.13 ! mean Si/C ratio
/
!-----------------------------------------------------------------------
&namp2zmort ! parameters for phytoplankton sinks for PISCES std - ln_p2z
@@ -229,7 +229,7 @@
resrat2 = 0.005 ! exsudation rate of mesozooplankton
mzrat2 = 0.01 ! mesozooplankton mortality rate
xpref2d = 1. ! mesozoo preference for diatoms
xpref2n = 0.3 ! mesozoo preference for nanophyto.
xpref2n = 0.45 ! mesozoo preference for nanophyto.
xpref2z = 1. ! mesozoo preference for microzoo.
xpref2c = 0.3 ! mesozoo preference for poc
xpref2m = 0.0 ! mesozoo preference for meso
@@ -242,11 +242,11 @@
xkgraz2 = 20.E-6 ! half saturation constant for meso grazing
epsher2 = 0.4 ! Efficicency of Mesozoo growth
epsher2min = 0.4 ! Minimum efficiency of mesozoo growth
sigma2 = 0.5 ! Fraction of mesozoo excretion as DOM
sigma2 = 0.67 ! Fraction of mesozoo excretion as DOM
unass2 = 0.3 ! non assimilated fraction of P by mesozoo
grazflux = 3.e3 ! flux-feeding rate
xsigma2 = 0.5 ! Predation window size
xsigma2del = 1.0 ! Predation window size scaling
xsigma2del = 0.5 ! Predation window size scaling
ln_dvm_meso = .false. ! Activates DVM for mesozooplankton
xfracmig = 0.3 ! Fraction of mesozooplankton performing DVM
/
@@ -256,11 +256,11 @@
part2 = 0.75 ! part of calcite not dissolved in mesozoo guts
grazrat2 = 0.5 ! maximal mesozoo grazing rate
bmetexc2 = .true. ! Metabolic use of excess carbon
resrat2 = 0.005 ! exsudation rate of mesozooplankton
lmzrat2 = 0.00 ! Linear mortality rate of mesozooplankton
resrat2 = 0.003 ! exsudation rate of mesozooplankton
lmzrat2 = 0.003 ! Linear mortality rate of mesozooplankton
mzrat2 = 0.01 ! mesozooplankton mortality rate
xpref2d = 1. ! meso preference for diatoms
xpref2n = 0.6 ! meso preference for nano
xpref2n = 0.75 ! meso preference for nano
xpref2z = 1. ! meso preference for zoo
xpref2m = 0. ! meso preference for zoo
xpref2c = 0.3 ! meso preference for poc
@@ -273,13 +273,13 @@
xkgraz2 = 20.E-6 ! half sturation constant for meso grazing
epsher2 = 0.5 ! Efficicency of Mesozoo growth
epsher2min = 0.5 ! Minimum efficiency of mesozoo growth
ssigma2 = 0.5 ! Fraction excreted as semi-labile DOM
ssigma2 = 0.67 ! Fraction excreted as semi-labile DOM
srespir2 = 0.15 ! Active respiration
unass2c = 0.3 ! non assimilated fraction of C by mesozoo
unass2n = 0.3 ! non assimilated fraction of N by mesozoo
unass2p = 0.3 ! non assimilated fraction of P by mesozoo
xsigma2 = 0.5 ! Predation window size
xsigma2del = 1.0 ! Predation window size scaling
xsigma2del = 0.5 ! Predation window size scaling
grazflux = 3.e3 ! flux-feeding rate
ln_dvm_meso = .false. ! Activates DVM for mesozooplankton
xfracmig = 0.25 ! Fraction of mesozooplankton performing DVM
@@ -310,10 +310,10 @@
part = 0.75 ! part of calcite not dissolved in microzoo guts
grazrat = 2.0 ! maximal zoo grazing rate
resrat = 0.02 ! Linear mortality rate of zooplankton
mzrat = 0.005 ! zooplankton mortality rate
mzrat = 0.01 ! zooplankton mortality rate
xprefc = 0.15 ! Microzoo preference for POM
xprefn = 1.0 ! Microzoo preference for Nanophyto
xprefd = 1.0 ! Microzoo preference for Diatoms
xprefd = 0.9 ! Microzoo preference for Diatoms
xprefz = 0.0 ! Microzoo preference for Microzoo
xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton
xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton
@@ -323,10 +323,10 @@
xkgraz = 20.E-6 ! half sturation constant for grazing
epsher = 0.4 ! Efficiency of microzoo growth
epshermin = 0.4 ! Minimum efficiency of microzoo growth
sigma1 = 0.5 ! Fraction of microzoo excretion as DOM
sigma1 = 0.67 ! Fraction of microzoo excretion as DOM
unass = 0.3 ! non assimilated fraction of phyto by zoo
xsigma = 0.5 ! Predation window size
xsigmadel = 1.0 ! Predation window size scaling
xsigmadel = 0.5 ! Predation window size scaling
/
!-----------------------------------------------------------------------
&namp5zzoo ! parameters for microzooplankton
@@ -334,13 +334,13 @@
part = 0.75 ! part of calcite not dissolved in microzoo gutsa
grazrat = 2.0 ! maximal zoo grazing rate
bmetexc = .true. ! Metabolic use of excess carbon
resrat = 0.02 ! exsudation rate of zooplankton
lmzrat = 0.0 ! Linear mortality rate of zooplankton
mzrat = 0.005 ! zooplankton mortality rate
resrat = 0.01 ! exsudation rate of zooplankton
lmzrat = 0.01 ! Linear mortality rate of zooplankton
mzrat = 0.01 ! zooplankton mortality rate
xprefc = 0.15 ! Microzoo preference for POM
xprefn = 1.0 ! Microzoo preference for Nanophyto
xprefn = 0.95 ! Microzoo preference for Nanophyto
xprefp = 1.0 ! Microzoo preference for picophyto
xprefd = 0.9 ! Microzoo preference for Diatoms
xprefd = 0.85 ! Microzoo preference for Diatoms
xprefz = 0. ! Microzoo preference for microzooplankton
xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton
xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton
@@ -351,13 +351,13 @@
xkgraz = 20.E-6 ! half saturation constant for grazing
epsher = 0.5 ! Efficiency of microzoo growth
epshermin = 0.5 ! Minimum efficiency of microzoo growth
ssigma = 0.5 ! Fraction excreted as semi-labile DOM
ssigma = 0.67 ! Fraction excreted as semi-labile DOM
srespir = 0.15 ! Active respiration
unassc = 0.3 ! non assimilated fraction of C by zoo
unassn = 0.3 ! non assimilated fraction of N by zoo
unassp = 0.3 ! non assimilated fraction of P by zoo
xsigma = 0.5 ! Predation window size
xsigmadel = 1.0 ! Predation window size scaling
xsigmadel = 0.5 ! Predation window size scaling
/
!-----------------------------------------------------------------------
&nampisfer ! parameters for iron chemistry
@@ -376,7 +376,7 @@
xsirem = 0.003 ! remineralization rate of Si
xsiremlab = 0.03 ! fast remineralization rate of Si
xsilab = 0.5 ! Fraction of labile biogenic silica
feratb = 40.E-6 ! Fe/C quota in bacteria
feratb = 60.E-6 ! Fe/C quota in bacteria
xkferb = 3E-10 ! Half-saturation constant for bacteria Fe/C
! ! ln_p5z
xremikc = 0.4 ! remineralization rate of DOC
@@ -390,8 +390,8 @@
rshape = 1.0 ! Shape of the gamma function
! ! ln_p5z
xremipc = 0.035 ! remineralisation rate of POC
xremipn = 0.032 ! remineralisation rate of PON
xremipp = 0.032 ! remineralisation rate of POP
xremipn = 0.03 ! remineralisation rate of PON
xremipp = 0.035 ! remineralisation rate of POP
/
!-----------------------------------------------------------------------
&nampisdiaz ! Namelist parameters for diazotrophy
@@ -494,8 +494,8 @@
!-----------------------------------------------------------------------
&nampisdmp ! Damping
!-----------------------------------------------------------------------
ln_pisdmp = .false. ! Relaxation for some tracers to a mean value
ln_pisdmp_alk = .false.
ln_pisdmp = .true. ! Relaxation for some tracers to a mean value
ln_pisdmp_alk = .true.
/
!-----------------------------------------------------------------------
&nampisdbg ! Namelist parameters for debugging