Merge branch '106-domain-index-lookup-table-initialisations-in-non-mpi-configurations' into 'branch_4.2'

Resolve "Domain-index lookup-table initialisations in non-MPI configurations"

See merge request nemo/nemo!167

Merge branch '37-wrong-parsing-of-filename-in-call-to-iom_open-by-agrif-zooms' into 'branch_4.2'

See merge request nemo/nemo!169

Merge branch 'update_gyre_bfm_configuration' into 'branch_4.2'

See merge request nemo/nemo!160

Merge branch '98-minor-fix-on-pisces-vertically-integrated-diagnostics' into 'main'

See merge request nemo/nemo!155

Merge branch '88-error-in-coupled-model-initialization' into 'main'

See merge request nemo/nemo!151

Merge branch '74-issues-with-ssh-initialization-in-iceinit-with-vvl-and-agrif' into 'branch_4.2'

See merge request nemo/nemo!149

Merge branch '86-abl-not-working-with-waves' into 'branch_4.2'

See merge request nemo/nemo!144

Resolve "ABL not working with waves"

Closes #86

See merge request nemo/nemo!134

(cherry picked from commit cdd23f30)

daec708d add missing sbc_wave call for abl case

Merge branch '75-offline-transport-not-working-with-linssh' into 'branch_4.2'

See merge request nemo/nemo!141

Merge branch '83-makenemo-t-option-not-working-with-agrif-based-configurations' into 'branch_4.2'

See merge request nemo/nemo!131

Resolve "makenemo "-t" option not working with AGRIF based configurations"

Closes #83

See merge request nemo/nemo!130

(cherry picked from commit 655e45c3)

c5ba3101 set correct directory variables for AGRIF

Merge branch '82-agrif-maxsearch' into 'branch_4.2'

See merge request nemo/nemo!129

manually report 74-ice-and-ssh-initialization-agrif-no-ice-in-zoom-case commit to branch_4.2

See merge request nemo/nemo!128

Merge branch '74-ssh-constant-initialization-in-iceinit-is-not-compliant-with-vvl' into 'branch_4.2'

See merge request nemo/nemo!121

Merge branch '74-ssh-constant-initialization-in-iceinit-is-not-compliant-with-vvl' into 'branch_4.2'

Merge branch '41-cpl_oasis-testcase-outdated' into 'branch_4.2'

See merge request nemo/nemo!111

Merge branch '55-bug-in-calcite-conservation-in-pisces' into 'branch_4.2'

See merge request nemo/nemo!105

Merge branch '56-bug-fix-for-2-way-exchange-between-sediment-and-biogeochemical-fields-in-pisces' into 'branch_4.2'

See merge request nemo/nemo!104

Merge branch '56-bug-fix-for-2-way-exchange-between-sediment-and-biogeochemical-fields-in-pisces' into 'branch_4.2'

Merge branch '51-missing-boundaries-conditions-in-nemo-top-1d' into 'branch_4.2'

See merge request nemo/nemo!103

Merge branch '52-compilation-error-when-using-mpi2' into 'branch_4.2'

See merge request nemo/nemo!97

Merge branch '40-developement-workflow' into 'main'

See merge request nemo/nemo!95